Literature DB >> 21583751

Bis(guanidinium) tetra-iodidomercurate(II).

Hiromitsu Terao, Thorsten M Gesing, Hideta Ishihara, Yoshihiro Furukawa, B Thimme Gowda.   

Abstract

The Hg atom in the crystal structure of the title compound, (CH(6)N(3))(2)[HgI(4)], is tetra-hedrally coordinated by four I atoms. The [HgI(4)](2-) ions are inter-connected to the [C(NH(2))(3)](+) ions by N-H⋯I hydrogen bonds, forming a three-dimensional network. The four different observed Hg-I distances [2.760 (2), 2.7762 (15), 2.8098 (14) and 2.833 (2) Å] are consistent with four different (127)I NQR frequencies observed, showing the existence of four unique I atoms in the tetra-iodidomercurate unit.

Entities:  

Year:  2009        PMID: 21583751      PMCID: PMC2977565          DOI: 10.1107/S160053680901280X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For synthetic methods, see: Furukawa et al. (2005 ▶); For the ability of the guanidinium ion to make hydrogen bonds and its unique planar shape, see: Terao et al. (2000 ▶). Hg–halogen bonds are sensitive to inter­molecular inter­actions such as hydrogen bonding (Ishihara et al., 2002 ▶), as evidenced by the halogen NQR of Hg compounds in which the resonance frequencies are widely spread (Furukawa et al., 2005 ▶). For background to this study, see: Terao et al. (2009 ▶).

Experimental

Crystal data

(CH6N3)2[HgI4] M = 828.37 Triclinic, a = 8.981 (2) Å b = 8.996 (2) Å c = 12.302 (3) Å α = 105.80 (3)° β = 95.79 (4)° γ = 118.46 (2)° V = 808.9 (5) Å3 Z = 2 Mo Kα radiation μ = 17.13 mm−1 T = 298 K 0.42 × 0.38 × 0.32 mm

Data collection

Stoe IPDS-I diffractometer Absorption correction: numerical (X-SHAPE; Stoe & Cie, 1999 ▶) T min = 0.017, T max = 0.057 14500 measured reflections 3613 independent reflections 1846 reflections with I > 2σ(I) R int = 0.118

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.135 S = 0.81 3613 reflections 156 parameters 32 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 3.08 e Å−3 Δρmin = −2.71 e Å−3 Data collection: EXPOSE (Stoe & Cie, 1999 ▶); cell refinement: CELL (Stoe & Cie, 1999 ▶); data reduction: XPREP (Bruker, 2003 ▶); program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL93 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Crystal Impact, 2008 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL93. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680901280X/bx2201sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680901280X/bx2201Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(CH6N3)2[HgI4]Z = 2
Mr = 828.37F(000) = 716
Triclinic, P1Dx = 3.401 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.981 (2) ÅCell parameters from 2000 reflections
b = 8.996 (2) Åθ = 2.7–28.0°
c = 12.302 (3) ŵ = 17.13 mm1
α = 105.80 (3)°T = 298 K
β = 95.79 (4)°Cylindric, yellow
γ = 118.46 (2)°0.42 × 0.38 × 0.32 mm
V = 808.9 (5) Å3
Stoe IPDS-I diffractometer3613 independent reflections
Radiation source: fine-focus sealed tube1846 reflections with I > 2σ(I)
graphiteRint = 0.118
imaging plate dynamic profile intergration scansθmax = 28.0°, θmin = 2.7°
Absorption correction: numerical (X-SHAPE; Stoe & Cie, 1999)h = −11→11
Tmin = 0.017, Tmax = 0.057k = −11→11
14500 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.059H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.135w = 1/[σ2(Fo2) + (0.0353P)2] where P = (Fo2 + 2Fc2)/3
S = 0.81(Δ/σ)max < 0.001
3613 reflectionsΔρmax = 3.08 e Å3
156 parametersΔρmin = −2.71 e Å3
32 restraintsExtinction correction: SHELXL93 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00075 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Hg10.34641 (9)0.61562 (10)0.73508 (6)0.0667 (3)
I10.0809 (2)0.5696 (2)0.84518 (10)0.0650 (3)
I20.53156 (14)0.4740 (2)0.82071 (9)0.0607 (3)
I30.58185 (14)0.9944 (2)0.80058 (10)0.0627 (3)
I40.22651 (14)0.4550 (2)0.49342 (9)0.0673 (3)
C10.0864 (17)0.0540 (15)0.8824 (8)0.051 (3)
N110.2387 (17)0.0661 (18)0.9149 (13)0.072 (4)
H11A0.246 (12)−0.030 (7)0.902 (4)0.12 (3)*
H11B0.333 (7)0.174 (5)0.9499 (19)0.12 (3)*
N120.0824 (14)0.2000 (14)0.9034 (11)0.066 (4)
H12A0.179 (2)0.3056 (13)0.9387 (16)0.12 (3)*
H12B−0.0169 (19)0.193 (2)0.8825 (17)0.12 (3)*
N13−0.0542 (16)−0.1065 (19)0.8300 (14)0.080 (4)
H13A−0.152 (4)−0.111 (8)0.810 (3)0.12 (3)*
H13B−0.054 (9)−0.207 (5)0.815 (3)0.12 (3)*
C20.2590 (18)−0.012 (2)0.5152 (16)0.067 (4)
N210.4067 (18)0.136 (2)0.5198 (14)0.086 (5)
H21A0.453 (8)0.138 (11)0.461 (4)0.12 (3)*
H21B0.457 (8)0.232 (6)0.584 (3)0.12 (3)*
N220.1800 (17)−0.158 (2)0.4211 (13)0.092 (5)
H22A0.085 (3)−0.246 (11)0.427 (11)0.12 (3)*
H22B0.212 (14)−0.173 (18)0.357 (5)0.12 (3)*
N230.193 (2)−0.009 (3)0.6078 (14)0.110 (7)
H23A0.098 (3)−0.100 (11)0.610 (12)0.12 (3)*
H23B0.252 (13)0.093 (8)0.668 (7)0.12 (3)*
U11U22U33U12U13U23
Hg10.0686 (4)0.0651 (5)0.0641 (4)0.0319 (4)0.0196 (3)0.0262 (4)
I10.0802 (7)0.0566 (7)0.0743 (7)0.0413 (6)0.0367 (6)0.0307 (6)
I20.0632 (6)0.0535 (7)0.0608 (6)0.0271 (6)0.0115 (5)0.0233 (5)
I30.0605 (6)0.0547 (7)0.0725 (7)0.0284 (6)0.0193 (5)0.0259 (6)
I40.0606 (6)0.0668 (8)0.0540 (6)0.0182 (6)0.0137 (5)0.0237 (6)
C10.060 (9)0.039 (10)0.050 (8)0.023 (8)0.014 (7)0.017 (8)
N110.063 (9)0.069 (11)0.111 (12)0.045 (8)0.032 (9)0.047 (10)
N120.063 (8)0.039 (9)0.077 (9)0.022 (7)−0.004 (7)0.009 (8)
N130.068 (9)0.053 (11)0.113 (13)0.033 (9)0.004 (9)0.027 (10)
C20.053 (9)0.047 (12)0.076 (12)0.014 (9)0.003 (9)0.016 (10)
N210.079 (10)0.048 (11)0.088 (11)0.005 (9)0.033 (9)0.013 (9)
N220.076 (10)0.054 (12)0.060 (9)−0.012 (9)0.006 (8)−0.006 (8)
N230.074 (11)0.096 (15)0.077 (11)−0.007 (10)0.032 (10)0.010 (11)
Hg1—I42.760 (2)N11—H11A0.88 (8)
Hg1—I12.7762 (15)N11—H11B0.87 (5)
Hg1—I22.8098 (14)N12—H12A0.87 (2)
Hg1—I32.833 (2)N12—H12B0.87 (2)
I1—H13Bi2.87 (7)N13—H13A0.87 (5)
I1—H11Ai3.00 (4)N13—H13B0.88 (6)
I2—H21B2.91 (3)C2—N221.30 (2)
I2—H23B2.99 (5)C2—N211.34 (2)
I3—H13Aii2.97 (5)C2—N231.34 (2)
I3—H22Biii3.05 (7)N21—H21B0.87 (4)
I3—H21Aiii3.03 (4)N21—H21A0.87 (7)
I3—H12Bii3.057 (19)N22—H22B0.87 (9)
C1—N131.29 (2)N22—H22A0.87 (9)
C1—N121.29 (2)N23—H23A0.87 (9)
C1—N111.32 (2)N23—H23B0.87 (8)
I4—Hg1—I1113.75 (5)H13A—N13—H13B120 (6)
I4—Hg1—I2109.54 (5)H13A—N13—C1117.4 (42)
I1—Hg1—I2108.81 (4)H13B—N13—C1122.5 (42)
I4—Hg1—I3109.38 (6)N22—C2—N21120.3 (17)
I1—Hg1—I3107.26 (5)N22—C2—N23119.8 (15)
I2—Hg1—I3107.93 (5)N21—C2—N23119.9 (17)
N13—C1—N12121.1 (14)H21B—N21—H21A120 (7)
N13—C1—N11119.7 (14)H21B—N21—C2118.6 (57)
N12—C1—N11119.2 (14)H21A—N21—C2121.3 (58)
H11A—N11—H11B120 (7)H22B—N22—H22A120 (11)
H11A—N11—C1120 (11)H22B—N22—C2126.5 (91)
H11B—N11—C1118.4 (62)H22A—N22—C2113.5 (90)
H12A—N12—H12B120 (2)H23A—N23—H23B120 (11)
H12A—N12—C1119.9 (19)H23A—N23—C2125.3 (100)
H12B—N12—C1120.0 (18)H23B—N23—C2114.6 (100)
N13—C1—N11—H11A0.0 (6)N22—C2—N21—H21B180.0 (5)
N12—C1—N11—H11A−180.0 (5)N23—C2—N21—H21B−0.1 (6)
N13—C1—N11—H11B180.0 (6)N22—C2—N21—H21A0.0 (5)
N12—C1—N11—H11B0.0 (5)N23—C2—N21—H21A179.9 (6)
N13—C1—N12—H12A−180.0 (6)N21—C2—N22—H22B0.1 (6)
N11—C1—N12—H12A0.0 (4)N23—C2—N22—H22B−179.9 (6)
N13—C1—N12—H12B0.1 (9)N21—C2—N22—H22A180.0 (5)
N11—C1—N12—H12B−180.0 (8)N23—C2—N22—H22A0.1 (6)
N12—C1—N13—H13A−0.1 (10)N22—C2—N23—H23A−0.2 (11)
N11—C1—N13—H13A179.9 (7)N21—C2—N23—H23A179.9 (8)
N12—C1—N13—H13B−179.9 (7)N22—C2—N23—H23B−179.9 (7)
N11—C1—N13—H13B0.1 (10)N21—C2—N23—H23B0.1 (9)
D—H···AD—HH···AD···AD—H···A
N11—H11A···I1iv0.87 (4)3.00 (4)3.78 (2)151 (2)
N12—H12A···I20.87 (4)3.46 (2)3.83 (2)123 (2)
N13—H13A···I3v0.87 (4)2.96 (4)3.80 (2)161 (2)
N13—H13B···I1iv0.87 (4)2.88 (4)3.69 (2)156 (2)
N21—H21A···I3iii0.87 (4)3.03 (4)3.82 (2)151 (2)
N21—H21B···I20.87 (4)2.91 (4)3.74 (2)162 (6)
N22—H22A···I4vi0.87 (9)2.98 (4)3.82 (2)162 (2)
N22—H22B···I3iii0.87 (10)3.05 (4)3.81 (2)147 (2)
N23—H23A···I4vi0.87 (9)2.91 (4)3.71 (2)153 (2)
N23—H23B···I20.87 (4)2.99 (4)3.82 (2)161 (6)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N11—H11A⋯I1i0.87 (4)3.00 (4)3.78 (2)151 (2)
N12—H12A⋯I20.87 (4)3.46 (2)3.83 (2)123 (2)
N13—H13A⋯I3ii0.87 (4)2.96 (4)3.80 (2)161 (2)
N13—H13B⋯I1i0.87 (4)2.88 (4)3.69 (2)156 (2)
N21—H21A⋯I3iii0.87 (4)3.03 (4)3.82 (2)151 (2)
N21—H21B⋯I20.87 (4)2.91 (4)3.74 (2)162 (6)
N22—H22A⋯I4iv0.87 (9)2.98 (4)3.82 (2)162 (2)
N22—H22B⋯I3iii0.87 (10)3.05 (4)3.81 (2)147 (2)
N23—H23A⋯I4iv0.87 (9)2.91 (4)3.71 (2)153 (2)
N23—H23B⋯I20.87 (4)2.99 (4)3.82 (2)161 (6)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Guanidinium tetra-bromidomercurate(II).

Authors:  Hiromitsu Terao; Thorsten M Gesing; Hideta Ishihara; Yoshihiro Furukawa; B Thimme Gowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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