Literature DB >> 21583737

Aqua-(3-formyl-2-oxidobenzoato-κO,O)(1,10-phenanthroline-κN,N')copper(II) dimethyl-formamide solvate.

Zhao-Wen Yu1, Ling Chang, Peng Song, Min-Hui He.   

Abstract

In the structure of the title complex, [Cu(C(8)H(4)O(4))(C(12)H(8)N(2))(H(2)O)]·C(3)H(7)NO, the Cu(II) ion is penta-coordinated in a distorted square-pyramidal geometry by two O atoms of a 3-formyl-2-oxidobenzoate dianion and two N atoms of a 1,10-phenanthroline ligand occupying the basal plane and a water O atom located at the apical site. The structure displays O-H⋯O hydrogen bonding and inter-molecular π-π stacking inter-actions between 1,10-phenantroline ligands [inter-planar distance of 3.448 (5) Å].

Entities:  

Year:  2009        PMID: 21583737      PMCID: PMC2977551          DOI: 10.1107/S1600536809011659

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the methanol solvate of aqua­(3-formyl-2-oxidobenzoato-κ2 O 1,O 2)(1,10-phenanthroline-κ2 N,N′)copper(II), see: Zhang et al. (2008 ▶).

Experimental

Crystal data

[Cu(C8H4O4)(C12H8N2)(H2O)C3H7NO M = 498.97 Triclinic, a = 9.6936 (6) Å b = 10.9020 (12) Å c = 11.2800 (7) Å α = 103.834 (1)° β = 109.764 (1)° γ = 98.604 (1)° V = 1054.09 (15) Å3 Z = 2 Mo Kα radiation μ = 1.08 mm−1 T = 296 K 0.39 × 0.35 × 0.28 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.677, T max = 0.751 5440 measured reflections 3687 independent reflections 3452 reflections with I > 2σ(I) R int = 0.011

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.112 S = 1.08 3687 reflections 301 parameters H-atom parameters constrained Δρmax = 0.81 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809011659/gk2199sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809011659/gk2199Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C8H4O4)(C12H8N2)(H2O)]·C3H7NOZ = 2
Mr = 498.97F(000) = 514
Triclinic, P1Dx = 1.572 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.6936 (6) ÅCell parameters from 4490 reflections
b = 10.9020 (12) Åθ = 2.3–28.3°
c = 11.2800 (7) ŵ = 1.08 mm1
α = 103.834 (1)°T = 296 K
β = 109.764 (1)°Block, green
γ = 98.604 (1)°0.39 × 0.35 × 0.28 mm
V = 1054.09 (15) Å3
Bruker SMART APEXII CCD area-detector diffractometer3687 independent reflections
Radiation source: fine-focus sealed tube3452 reflections with I > 2σ(I)
graphiteRint = 0.011
φ and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −11→11
Tmin = 0.677, Tmax = 0.751k = −12→12
5440 measured reflectionsl = −13→5
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0719P)2 + 0.6371P] where P = (Fo2 + 2Fc2)/3
3687 reflections(Δ/σ)max < 0.001
301 parametersΔρmax = 0.81 e Å3
0 restraintsΔρmin = −0.47 e Å3
0 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.16328 (3)0.00556 (3)0.42283 (3)0.03264 (14)
O1W0.3462 (2)0.1436 (2)0.3911 (2)0.0530 (5)
H1WA0.39930.20980.45810.064*
H1WB0.40650.10740.36400.064*
N10.1623 (2)−0.1462 (2)0.2786 (2)0.0327 (4)
N2−0.0089 (2)0.0216 (2)0.2678 (2)0.0308 (4)
O10.0712 (3)0.4672 (2)0.7470 (2)0.0664 (7)
O20.1357 (2)0.13957 (18)0.54916 (17)0.0398 (4)
O30.3000 (2)−0.0508 (2)0.55253 (18)0.0448 (5)
O40.4950 (2)−0.0174 (2)0.73640 (19)0.0488 (5)
C10.2529 (3)−0.2267 (3)0.2873 (3)0.0398 (6)
H10.3279−0.21600.36930.048*
C20.2386 (4)−0.3274 (3)0.1765 (3)0.0464 (7)
H20.3035−0.38240.18590.056*
C30.1309 (3)−0.3448 (3)0.0559 (3)0.0443 (6)
H30.1210−0.4118−0.01760.053*
C40.0332 (3)−0.2596 (2)0.0429 (2)0.0359 (6)
C5−0.0824 (3)−0.2675 (3)−0.0794 (3)0.0459 (7)
H5−0.0983−0.3331−0.15610.055*
C6−0.1692 (3)−0.1811 (3)−0.0857 (3)0.0449 (7)
H6−0.2427−0.1875−0.16690.054*
C7−0.1500 (3)−0.0799 (3)0.0307 (2)0.0364 (6)
C8−0.2360 (3)0.0125 (3)0.0314 (3)0.0445 (6)
H8−0.31190.0107−0.04650.053*
C9−0.2064 (3)0.1058 (3)0.1490 (3)0.0460 (7)
H9−0.26260.16770.15100.055*
C10−0.0924 (3)0.1080 (3)0.2656 (3)0.0376 (6)
H10−0.07420.17190.34420.045*
C11−0.0379 (3)−0.0707 (2)0.1520 (2)0.0302 (5)
C120.0550 (3)−0.1618 (2)0.1578 (2)0.0307 (5)
C130.0912 (4)0.3653 (3)0.6920 (3)0.0460 (7)
H130.02300.32050.60560.055*
C140.2124 (3)0.3076 (2)0.7494 (3)0.0353 (6)
C150.3105 (3)0.3681 (3)0.8826 (3)0.0432 (6)
H150.29610.44330.93140.052*
C160.4270 (4)0.3178 (3)0.9413 (3)0.0503 (7)
H160.49250.35911.02920.060*
C170.4463 (3)0.2053 (3)0.8687 (3)0.0413 (6)
H170.52520.17130.91000.050*
C180.3532 (3)0.1408 (2)0.7370 (2)0.0314 (5)
C190.2317 (3)0.1921 (2)0.6732 (2)0.0308 (5)
C200.3865 (3)0.0178 (3)0.6722 (2)0.0340 (5)
C210.2290 (5)0.4426 (5)0.4552 (4)0.0845 (12)
H21A0.26960.37330.42160.127*
H21B0.20830.49360.39560.127*
H21C0.13700.40630.46260.127*
C220.3128 (7)0.6469 (4)0.6359 (6)0.1041 (18)
H22A0.40440.69950.70880.156*
H22B0.23230.63500.66660.156*
H22C0.28690.68970.56920.156*
N30.3350 (3)0.5228 (3)0.5809 (2)0.0490 (6)
C230.4569 (4)0.4849 (4)0.6420 (4)0.0633 (9)
H230.52580.54000.72450.076*
O50.4840 (3)0.3805 (2)0.5953 (3)0.0700 (7)
U11U22U33U12U13U23
Cu10.0417 (2)0.0314 (2)0.02085 (19)0.01603 (14)0.00811 (14)0.00282 (13)
O1W0.0483 (11)0.0443 (11)0.0639 (14)0.0135 (9)0.0265 (10)0.0044 (10)
N10.0378 (11)0.0313 (11)0.0256 (10)0.0106 (9)0.0101 (9)0.0051 (8)
N20.0345 (10)0.0324 (10)0.0259 (10)0.0096 (8)0.0121 (8)0.0084 (8)
O10.0850 (17)0.0556 (14)0.0610 (14)0.0422 (13)0.0300 (13)0.0051 (11)
O20.0464 (10)0.0414 (10)0.0252 (9)0.0210 (8)0.0080 (8)0.0017 (7)
O30.0598 (12)0.0410 (10)0.0261 (9)0.0268 (9)0.0061 (8)0.0038 (8)
O40.0499 (11)0.0577 (12)0.0329 (10)0.0296 (10)0.0074 (9)0.0066 (9)
C10.0441 (14)0.0377 (14)0.0369 (14)0.0175 (12)0.0148 (12)0.0074 (11)
C20.0518 (17)0.0425 (15)0.0467 (16)0.0213 (13)0.0221 (14)0.0070 (13)
C30.0533 (16)0.0370 (14)0.0407 (15)0.0119 (12)0.0244 (13)−0.0006 (12)
C40.0425 (14)0.0337 (13)0.0271 (12)0.0047 (11)0.0156 (11)0.0017 (10)
C50.0525 (16)0.0460 (16)0.0281 (13)0.0048 (13)0.0151 (12)−0.0024 (12)
C60.0450 (15)0.0537 (17)0.0234 (12)0.0048 (13)0.0049 (11)0.0067 (12)
C70.0355 (13)0.0408 (14)0.0286 (12)0.0043 (11)0.0102 (10)0.0100 (11)
C80.0400 (14)0.0555 (17)0.0362 (14)0.0144 (13)0.0077 (11)0.0200 (13)
C90.0469 (16)0.0496 (17)0.0485 (17)0.0248 (13)0.0182 (13)0.0203 (14)
C100.0422 (14)0.0361 (13)0.0363 (14)0.0142 (11)0.0171 (11)0.0092 (11)
C110.0326 (12)0.0316 (12)0.0255 (11)0.0061 (10)0.0121 (10)0.0077 (10)
C120.0333 (12)0.0320 (12)0.0262 (12)0.0062 (10)0.0133 (10)0.0069 (10)
C130.0571 (17)0.0447 (16)0.0430 (16)0.0221 (13)0.0259 (14)0.0105 (13)
C140.0421 (14)0.0314 (13)0.0337 (13)0.0072 (11)0.0204 (11)0.0053 (10)
C150.0521 (16)0.0328 (13)0.0371 (14)0.0061 (12)0.0198 (12)−0.0034 (11)
C160.0530 (17)0.0463 (16)0.0326 (14)0.0055 (13)0.0094 (13)−0.0063 (12)
C170.0402 (14)0.0431 (15)0.0329 (14)0.0097 (12)0.0101 (11)0.0047 (12)
C180.0348 (12)0.0314 (12)0.0265 (12)0.0057 (10)0.0131 (10)0.0057 (10)
C190.0353 (12)0.0303 (12)0.0271 (12)0.0061 (10)0.0156 (10)0.0055 (10)
C200.0388 (13)0.0391 (14)0.0254 (12)0.0138 (11)0.0129 (11)0.0092 (11)
C210.072 (3)0.098 (3)0.073 (3)0.031 (2)0.010 (2)0.031 (2)
C220.140 (5)0.056 (2)0.152 (5)0.046 (3)0.091 (4)0.033 (3)
N30.0601 (16)0.0423 (13)0.0492 (15)0.0193 (11)0.0253 (13)0.0121 (11)
C230.062 (2)0.065 (2)0.056 (2)0.0156 (18)0.0195 (17)0.0136 (17)
O50.0769 (17)0.0578 (15)0.0774 (17)0.0293 (13)0.0319 (14)0.0145 (13)
Cu1—O21.9012 (18)C8—C91.374 (4)
Cu1—O31.9071 (18)C8—H80.9300
Cu1—N12.020 (2)C9—C101.394 (4)
Cu1—N22.033 (2)C9—H90.9300
Cu1—O1W2.329 (2)C10—H100.9300
O1W—H1WA0.8500C11—C121.435 (4)
O1W—H1WB0.8500C13—C141.448 (4)
N1—C11.328 (3)C13—H130.9300
N1—C121.359 (3)C14—C151.403 (4)
N2—C101.330 (3)C14—C191.421 (3)
N2—C111.356 (3)C15—C161.366 (5)
O1—C131.215 (4)C15—H150.9300
O2—C191.315 (3)C16—C171.379 (4)
O3—C201.284 (3)C16—H160.9300
O4—C201.231 (3)C17—C181.386 (4)
C1—C21.403 (4)C17—H170.9300
C1—H10.9300C18—C191.426 (4)
C2—C31.354 (4)C18—C201.502 (3)
C2—H20.9300C21—N31.408 (5)
C3—C41.420 (4)C21—H21A0.9600
C3—H30.9300C21—H21B0.9600
C4—C121.395 (3)C21—H21C0.9600
C4—C51.427 (4)C22—N31.428 (5)
C5—C61.352 (4)C22—H22A0.9600
C5—H50.9300C22—H22B0.9600
C6—C71.434 (4)C22—H22C0.9600
C6—H60.9300N3—C231.332 (5)
C7—C111.400 (3)C23—O51.240 (4)
C7—C81.401 (4)C23—H230.9300
O2—Cu1—O394.58 (8)C9—C10—H10119.0
O2—Cu1—N1172.36 (8)N2—C11—C7123.8 (2)
O3—Cu1—N189.63 (8)N2—C11—C12116.4 (2)
O2—Cu1—N293.28 (8)C7—C11—C12119.8 (2)
O3—Cu1—N2166.80 (9)N1—C12—C4123.4 (2)
N1—Cu1—N281.45 (8)N1—C12—C11116.5 (2)
O2—Cu1—O1W95.02 (8)C4—C12—C11120.1 (2)
O3—Cu1—O1W96.84 (9)O1—C13—C14125.5 (3)
N1—Cu1—O1W90.80 (8)O1—C13—H13117.2
N2—Cu1—O1W93.03 (8)C14—C13—H13117.2
Cu1—O1W—H1WA114.5C15—C14—C19120.6 (3)
Cu1—O1W—H1WB115.6C15—C14—C13118.5 (2)
H1WA—O1W—H1WB107.7C19—C14—C13121.0 (2)
C1—N1—C12118.3 (2)C16—C15—C14120.7 (3)
C1—N1—Cu1128.79 (18)C16—C15—H15119.6
C12—N1—Cu1112.92 (16)C14—C15—H15119.6
C10—N2—C11117.8 (2)C15—C16—C17119.3 (3)
C10—N2—Cu1129.47 (18)C15—C16—H16120.3
C11—N2—Cu1112.70 (16)C17—C16—H16120.3
C19—O2—Cu1123.98 (16)C16—C17—C18122.8 (3)
C20—O3—Cu1126.98 (17)C16—C17—H17118.6
N1—C1—C2121.9 (3)C18—C17—H17118.6
N1—C1—H1119.1C17—C18—C19118.9 (2)
C2—C1—H1119.1C17—C18—C20116.5 (2)
C3—C2—C1120.3 (3)C19—C18—C20124.5 (2)
C3—C2—H2119.8O2—C19—C14117.8 (2)
C1—C2—H2119.8O2—C19—C18124.5 (2)
C2—C3—C4119.2 (2)C14—C19—C18117.7 (2)
C2—C3—H3120.4O4—C20—O3120.9 (2)
C4—C3—H3120.4O4—C20—C18119.2 (2)
C12—C4—C3116.9 (2)O3—C20—C18119.9 (2)
C12—C4—C5119.1 (2)N3—C21—H21A109.5
C3—C4—C5124.0 (2)N3—C21—H21B109.5
C6—C5—C4121.1 (2)H21A—C21—H21B109.5
C6—C5—H5119.5N3—C21—H21C109.5
C4—C5—H5119.5H21A—C21—H21C109.5
C5—C6—C7121.1 (2)H21B—C21—H21C109.5
C5—C6—H6119.4N3—C22—H22A109.5
C7—C6—H6119.4N3—C22—H22B109.5
C11—C7—C8117.1 (2)H22A—C22—H22B109.5
C11—C7—C6118.8 (2)N3—C22—H22C109.5
C8—C7—C6124.1 (2)H22A—C22—H22C109.5
C9—C8—C7119.0 (2)H22B—C22—H22C109.5
C9—C8—H8120.5C23—N3—C21119.7 (3)
C7—C8—H8120.5C23—N3—C22121.6 (4)
C8—C9—C10120.3 (3)C21—N3—C22118.5 (4)
C8—C9—H9119.9O5—C23—N3123.8 (3)
C10—C9—H9119.9O5—C23—H23118.1
N2—C10—C9122.1 (2)N3—C23—H23118.1
N2—C10—H10119.0
O3—Cu1—N1—C1−11.6 (2)C8—C7—C11—N2−0.1 (4)
N2—Cu1—N1—C1178.2 (2)C6—C7—C11—N2179.4 (2)
O1W—Cu1—N1—C185.2 (2)C8—C7—C11—C12−179.5 (2)
O3—Cu1—N1—C12170.25 (17)C6—C7—C11—C120.0 (3)
N2—Cu1—N1—C120.02 (16)C1—N1—C12—C41.3 (4)
O1W—Cu1—N1—C12−92.91 (17)Cu1—N1—C12—C4179.64 (18)
O2—Cu1—N2—C106.0 (2)C1—N1—C12—C11−178.4 (2)
O3—Cu1—N2—C10132.5 (3)Cu1—N1—C12—C110.0 (3)
N1—Cu1—N2—C10−179.5 (2)C3—C4—C12—N1−0.6 (4)
O1W—Cu1—N2—C10−89.2 (2)C5—C4—C12—N1−179.8 (2)
O2—Cu1—N2—C11−174.44 (16)C3—C4—C12—C11179.0 (2)
O3—Cu1—N2—C11−48.0 (4)C5—C4—C12—C11−0.1 (4)
N1—Cu1—N2—C11−0.01 (15)N2—C11—C12—N10.0 (3)
O1W—Cu1—N2—C1190.35 (16)C7—C11—C12—N1179.4 (2)
O3—Cu1—O2—C1921.4 (2)N2—C11—C12—C4−179.7 (2)
N2—Cu1—O2—C19−169.2 (2)C7—C11—C12—C4−0.3 (3)
O1W—Cu1—O2—C19−75.9 (2)O1—C13—C14—C154.5 (5)
O2—Cu1—O3—C20−26.0 (2)O1—C13—C14—C19−175.7 (3)
N1—Cu1—O3—C20160.4 (2)C19—C14—C15—C160.5 (4)
N2—Cu1—O3—C20−152.3 (3)C13—C14—C15—C16−179.7 (3)
O1W—Cu1—O3—C2069.7 (2)C14—C15—C16—C17−0.9 (5)
C12—N1—C1—C2−1.1 (4)C15—C16—C17—C180.8 (5)
Cu1—N1—C1—C2−179.2 (2)C16—C17—C18—C19−0.3 (4)
N1—C1—C2—C30.3 (4)C16—C17—C18—C20−178.7 (3)
C1—C2—C3—C40.3 (4)Cu1—O2—C19—C14168.07 (16)
C2—C3—C4—C12−0.2 (4)Cu1—O2—C19—C18−12.3 (3)
C2—C3—C4—C5178.9 (3)C15—C14—C19—O2179.7 (2)
C12—C4—C5—C60.8 (4)C13—C14—C19—O2−0.1 (4)
C3—C4—C5—C6−178.3 (3)C15—C14—C19—C180.1 (4)
C4—C5—C6—C7−1.1 (4)C13—C14—C19—C18−179.7 (2)
C5—C6—C7—C110.7 (4)C17—C18—C19—O2−179.8 (2)
C5—C6—C7—C8−179.9 (3)C20—C18—C19—O2−1.5 (4)
C11—C7—C8—C90.0 (4)C17—C18—C19—C14−0.2 (3)
C6—C7—C8—C9−179.4 (3)C20—C18—C19—C14178.1 (2)
C7—C8—C9—C100.0 (4)Cu1—O3—C20—O4−162.1 (2)
C11—N2—C10—C9−0.2 (4)Cu1—O3—C20—C1819.6 (3)
Cu1—N2—C10—C9179.35 (19)C17—C18—C20—O4−2.0 (4)
C8—C9—C10—N20.1 (4)C19—C18—C20—O4179.7 (2)
C10—N2—C11—C70.2 (3)C17—C18—C20—O3176.3 (2)
Cu1—N2—C11—C7−179.38 (18)C19—C18—C20—O3−2.0 (4)
C10—N2—C11—C12179.6 (2)C21—N3—C23—O5−0.7 (6)
Cu1—N2—C11—C120.0 (3)C22—N3—C23—O5−176.8 (4)
D—H···AD—HH···AD···AD—H···A
O1W—H1WB···O4i0.851.912.741 (3)167
O1W—H1WA···O50.851.962.794 (3)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WB⋯O4i0.851.912.741 (3)167
O1W—H1WA⋯O50.851.962.794 (3)167

Symmetry code: (i) .

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