Literature DB >> 21201271

Aqua-(3-formyl-2-oxidobenzoato-κO,O)(1,10-phenanthroline-κN,N')copper(II) methanol solvate.

Wu Zhang1, Qingxia Cui, Ling Chang, Zhaowen Yu.   

Abstract

In the structure of the title complex, [Cu(C(8)H(4)O(4))(C(12)H(8)N(2))(H(2)O)]·CH(4)O, the Cu(II) ion is penta-coordinated in a tetra-gonal-pyramidal geometry, with two O atoms of the 3-formyl-2-oxidobenzoate (3-formyl-salicylate) anion and two N atoms of 1,10-phenanthroline occupying the basal plane, and a water O atom located at the apical site. The structure displays O-H⋯O hydrogen bonding.

Entities:  

Year:  2008        PMID: 21201271      PMCID: PMC2960304          DOI: 10.1107/S1600536807067967

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Erxleben & Schumacher (2001 ▶); Ma et al. (2007 ▶); Akitsu & Einaga (2006 ▶); Yu, Cui et al. (2007 ▶); Yu, Hao et al. (2006 ▶); Costes et al. (2004 ▶); Karmakar et al. (2005 ▶).

Experimental

Crystal data

[Cu(C8H4O4)(C12H8N2)(H2O)]·CH4O M = 457.91 Triclinic, a = 8.6714 (11) Å b = 10.3895 (13) Å c = 11.7617 (14) Å α = 115.125 (2)° β = 95.859 (2)° γ = 93.589 (2)° V = 947.7 (2) Å3 Z = 2 Mo Kα radiation μ = 1.20 mm−1 T = 296 (2) K 0.21 × 0.16 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: none 4953 measured reflections 3336 independent reflections 2336 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.100 S = 0.94 3336 reflections 273 parameters H-atom parameters constrained Δρmax = 0.56 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Bruker, 2005 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807067967/kj2080sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807067967/kj2080Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C8H4O4)(C12H8N2)(H2O)]·CH4OZ = 2
Mr = 457.91F000 = 470
Triclinic, P1Dx = 1.605 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 8.6714 (11) ÅCell parameters from 1476 reflections
b = 10.3895 (13) Åθ = 2.4–23.1º
c = 11.7617 (14) ŵ = 1.20 mm1
α = 115.125 (2)ºT = 296 (2) K
β = 95.859 (2)ºBlock, green
γ = 93.589 (2)º0.21 × 0.16 × 0.15 mm
V = 947.7 (2) Å3
Bruker APEXII CCD area-detector diffractometer2336 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.061
Monochromator: graphiteθmax = 25.0º
T = 296(2) Kθmin = 1.9º
φ and ω scansh = −10→8
Absorption correction: nonek = −11→12
4953 measured reflectionsl = −13→11
3336 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.100  w = 1/[σ2(Fo2) + (0.0357P)2] where P = (Fo2 + 2Fc2)/3
S = 0.94(Δ/σ)max < 0.001
3336 reflectionsΔρmax = 0.56 e Å3
273 parametersΔρmin = −0.40 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.04891 (5)0.15042 (5)0.43931 (4)0.04238 (18)
O1W0.2655 (3)0.2918 (3)0.4306 (3)0.0690 (8)
H1WA0.33700.23820.40540.083*
H1WB0.24520.32750.37850.083*
N1−0.1078 (3)0.2009 (3)0.3305 (3)0.0395 (7)
N20.0517 (3)−0.0202 (3)0.2729 (3)0.0366 (7)
O10.0334 (3)0.4719 (2)0.7766 (2)0.0541 (7)
O2−0.0072 (3)0.3010 (3)0.5848 (2)0.0518 (7)
O30.1798 (3)0.0801 (2)0.5341 (2)0.0433 (6)
O40.5232 (3)−0.0845 (3)0.6619 (3)0.0694 (9)
C10.2080 (4)0.2978 (3)0.7301 (3)0.0344 (8)
C20.2507 (4)0.1602 (3)0.6484 (3)0.0347 (8)
C30.3754 (4)0.1093 (4)0.6985 (3)0.0364 (8)
C40.4531 (4)0.1902 (4)0.8211 (4)0.0455 (9)
H4A0.53490.15450.85170.055*
C50.4121 (5)0.3205 (4)0.8972 (4)0.0517 (10)
H5A0.46490.37380.97880.062*
C60.2905 (4)0.3714 (4)0.8503 (3)0.0433 (9)
H6A0.26240.46010.90250.052*
C70.0722 (4)0.3618 (4)0.6951 (3)0.0377 (8)
C80.4236 (4)−0.0293 (4)0.6237 (4)0.0480 (10)
H8A0.3748−0.07980.54040.058*
C9−0.1828 (4)0.3141 (4)0.3596 (4)0.0511 (10)
H9A−0.15960.38760.44130.061*
C10−0.2942 (5)0.3298 (4)0.2752 (4)0.0560 (11)
H10A−0.34510.41160.30050.067*
C11−0.3287 (5)0.2251 (4)0.1550 (4)0.0554 (11)
H11A−0.40430.23470.09790.066*
C12−0.2512 (4)0.1027 (4)0.1166 (3)0.0429 (9)
C13−0.2754 (5)−0.0140 (4)−0.0074 (4)0.0534 (11)
H13A−0.3494−0.0119−0.06950.064*
C14−0.1935 (5)−0.1267 (4)−0.0360 (4)0.0546 (11)
H14A−0.2120−0.2007−0.11770.066*
C15−0.0787 (4)−0.1356 (4)0.0558 (3)0.0421 (9)
C160.0130 (5)−0.2480 (4)0.0336 (3)0.0505 (10)
H16A0.0007−0.3254−0.04610.061*
C170.1192 (5)−0.2437 (4)0.1277 (4)0.0493 (10)
H17A0.1810−0.31780.11260.059*
C180.1366 (4)−0.1285 (4)0.2479 (3)0.0429 (9)
H18A0.2095−0.12760.31200.051*
C19−0.0538 (4)−0.0235 (4)0.1789 (3)0.0362 (8)
C20−0.1402 (4)0.0960 (4)0.2081 (3)0.0373 (8)
C210.6449 (6)0.4308 (6)0.6735 (6)0.108 (2)
H21A0.60250.44680.75010.162*
H21B0.68870.34160.64340.162*
H21C0.56350.42750.61030.162*
O50.7606 (4)0.5414 (3)0.6979 (3)0.0751 (9)
H50.84590.51830.71380.113*
U11U22U33U12U13U23
Cu10.0434 (3)0.0424 (3)0.0300 (3)0.0188 (2)0.00278 (19)0.0037 (2)
O1W0.0605 (19)0.0671 (19)0.092 (2)0.0250 (16)0.0175 (17)0.0422 (18)
N10.0402 (18)0.0358 (17)0.0363 (17)0.0096 (15)0.0087 (14)0.0085 (14)
N20.0324 (17)0.0363 (17)0.0342 (17)0.0068 (14)0.0089 (14)0.0074 (14)
O10.0666 (19)0.0384 (15)0.0413 (15)0.0236 (14)0.0049 (14)0.0001 (13)
O20.0540 (17)0.0520 (16)0.0321 (14)0.0283 (14)0.0016 (12)0.0000 (12)
O30.0487 (16)0.0346 (13)0.0327 (14)0.0154 (12)−0.0007 (12)0.0014 (11)
O40.0579 (19)0.0649 (19)0.092 (2)0.0275 (16)0.0107 (17)0.0382 (18)
C10.036 (2)0.0324 (19)0.0313 (19)0.0047 (16)0.0042 (16)0.0100 (16)
C20.034 (2)0.036 (2)0.034 (2)0.0034 (17)0.0070 (16)0.0144 (17)
C30.032 (2)0.037 (2)0.042 (2)0.0041 (17)0.0067 (17)0.0188 (18)
C40.036 (2)0.051 (2)0.055 (3)0.0044 (19)0.0007 (19)0.030 (2)
C50.054 (3)0.049 (2)0.042 (2)−0.003 (2)−0.012 (2)0.015 (2)
C60.050 (2)0.033 (2)0.037 (2)0.0011 (18)0.0020 (18)0.0064 (17)
C70.041 (2)0.034 (2)0.032 (2)0.0050 (17)0.0070 (17)0.0079 (17)
C80.041 (2)0.049 (2)0.057 (3)0.011 (2)0.012 (2)0.024 (2)
C90.049 (2)0.046 (2)0.055 (3)0.014 (2)0.009 (2)0.018 (2)
C100.050 (3)0.054 (3)0.068 (3)0.019 (2)0.008 (2)0.029 (2)
C110.051 (3)0.064 (3)0.060 (3)0.006 (2)−0.003 (2)0.038 (3)
C120.039 (2)0.050 (2)0.042 (2)−0.0015 (19)0.0021 (18)0.025 (2)
C130.057 (3)0.062 (3)0.041 (2)−0.011 (2)−0.009 (2)0.029 (2)
C140.066 (3)0.053 (3)0.033 (2)−0.012 (2)−0.001 (2)0.010 (2)
C150.044 (2)0.042 (2)0.033 (2)−0.0061 (19)0.0078 (18)0.0098 (17)
C160.058 (3)0.042 (2)0.034 (2)−0.003 (2)0.016 (2)−0.0004 (19)
C170.054 (3)0.036 (2)0.048 (2)0.0128 (19)0.022 (2)0.0048 (19)
C180.037 (2)0.043 (2)0.044 (2)0.0078 (18)0.0091 (18)0.0141 (18)
C190.037 (2)0.038 (2)0.0274 (19)−0.0022 (17)0.0053 (16)0.0089 (16)
C200.035 (2)0.043 (2)0.032 (2)−0.0003 (18)0.0048 (17)0.0157 (18)
C210.068 (4)0.116 (5)0.173 (6)0.040 (4)0.040 (4)0.085 (5)
O50.078 (2)0.0586 (19)0.085 (2)0.0297 (18)0.001 (2)0.0276 (18)
Cu1—O1W2.348 (3)C8—H8A0.9300
Cu1—O21.898 (2)C9—C101.381 (5)
Cu1—O31.898 (2)C9—H9A0.9300
Cu1—N12.016 (3)C10—C111.356 (5)
Cu1—N22.011 (3)C10—H10A0.9300
O1W—H1WA0.8500C11—C121.399 (5)
O1W—H1WB0.8499C11—H11A0.9300
N1—C91.312 (4)C12—C201.396 (5)
N1—C201.373 (4)C12—C131.430 (5)
N2—C181.327 (4)C13—C141.344 (5)
N2—C191.348 (4)C13—H13A0.9300
O1—C71.234 (4)C14—C151.430 (5)
O2—C71.273 (4)C14—H14A0.9300
O3—C21.301 (4)C15—C161.401 (5)
O4—C81.216 (4)C15—C191.403 (4)
C1—C61.380 (5)C16—C171.350 (5)
C1—C21.441 (4)C16—H16A0.9300
C1—C71.494 (5)C17—C181.397 (5)
C2—C31.415 (5)C17—H17A0.9300
C3—C41.394 (5)C18—H18A0.9300
C3—C81.448 (5)C19—C201.424 (5)
C4—C51.363 (5)C21—O51.388 (5)
C4—H4A0.9300C21—H21A0.9600
C5—C61.375 (5)C21—H21B0.9600
C5—H5A0.9300C21—H21C0.9600
C6—H6A0.9300O5—H50.8200
O1W—Cu1—O293.40 (11)C3—C8—H8A117.6
O1W—Cu1—O390.04 (10)N1—C9—C10123.4 (4)
O1W—Cu1—N196.50 (11)N1—C9—H9A118.3
O1W—Cu1—N297.69 (10)C10—C9—H9A118.3
O2—Cu1—O394.32 (10)C11—C10—C9119.5 (4)
O2—Cu1—N188.77 (11)C11—C10—H10A120.2
O2—Cu1—N2166.01 (11)C9—C10—H10A120.2
O3—Cu1—N1172.59 (11)C10—C11—C12120.2 (4)
O3—Cu1—N294.17 (11)C10—C11—H11A119.9
N1—Cu1—N281.55 (11)C12—C11—H11A119.9
Cu1—O1W—H1WA107.8C20—C12—C11116.4 (4)
Cu1—O1W—H1WB112.5C20—C12—C13118.0 (4)
H1WA—O1W—H1WB107.7C11—C12—C13125.6 (4)
C9—N1—C20117.2 (3)C14—C13—C12121.4 (4)
C9—N1—Cu1130.2 (3)C14—C13—H13A119.3
C20—N1—Cu1112.5 (2)C12—C13—H13A119.3
C18—N2—C19118.4 (3)C13—C14—C15121.6 (4)
C18—N2—Cu1128.5 (3)C13—C14—H14A119.2
C19—N2—Cu1113.0 (2)C15—C14—H14A119.2
C7—O2—Cu1126.8 (2)C16—C15—C19116.4 (4)
C2—O3—Cu1123.3 (2)C16—C15—C14125.3 (4)
C6—C1—C2118.7 (3)C19—C15—C14118.3 (4)
C6—C1—C7117.6 (3)C17—C16—C15120.0 (3)
C2—C1—C7123.6 (3)C17—C16—H16A120.0
O3—C2—C3118.8 (3)C15—C16—H16A120.0
O3—C2—C1124.2 (3)C16—C17—C18120.2 (4)
C3—C2—C1117.0 (3)C16—C17—H17A119.9
C4—C3—C2120.9 (3)C18—C17—H17A119.9
C4—C3—C8118.5 (3)N2—C18—C17121.7 (4)
C2—C3—C8120.6 (3)N2—C18—H18A119.2
C5—C4—C3121.6 (3)C17—C18—H18A119.2
C5—C4—H4A119.2N2—C19—C15123.5 (3)
C3—C4—H4A119.2N2—C19—C20116.9 (3)
C4—C5—C6118.3 (4)C15—C19—C20119.6 (3)
C4—C5—H5A120.8N1—C20—C12123.3 (3)
C6—C5—H5A120.8N1—C20—C19115.7 (3)
C5—C6—C1123.6 (3)C12—C20—C19121.0 (3)
C5—C6—H6A118.2O5—C21—H21A109.5
C1—C6—H6A118.2O5—C21—H21B109.5
O1—C7—O2120.1 (3)H21A—C21—H21B109.5
O1—C7—C1118.9 (3)O5—C21—H21C109.5
O2—C7—C1120.9 (3)H21A—C21—H21C109.5
O4—C8—C3124.8 (4)H21B—C21—H21C109.5
O4—C8—H8A117.6C21—O5—H5109.5
O2—Cu1—N1—C912.7 (3)C6—C1—C7—O2178.7 (3)
N2—Cu1—N1—C9−177.4 (3)C2—C1—C7—O2−5.4 (5)
O1W—Cu1—N1—C9−80.5 (3)C4—C3—C8—O43.6 (5)
O2—Cu1—N1—C20−165.8 (2)C2—C3—C8—O4−175.6 (3)
N2—Cu1—N1—C204.1 (2)C20—N1—C9—C102.1 (5)
O1W—Cu1—N1—C20100.9 (2)Cu1—N1—C9—C10−176.3 (3)
O2—Cu1—N2—C18−134.6 (4)N1—C9—C10—C11−0.8 (6)
O3—Cu1—N2—C18−7.3 (3)C9—C10—C11—C12−0.5 (6)
N1—Cu1—N2—C18178.7 (3)C10—C11—C12—C200.4 (5)
O1W—Cu1—N2—C1883.3 (3)C10—C11—C12—C13−179.2 (4)
O2—Cu1—N2—C1942.0 (6)C20—C12—C13—C14−0.5 (5)
O3—Cu1—N2—C19169.2 (2)C11—C12—C13—C14179.1 (4)
N1—Cu1—N2—C19−4.7 (2)C12—C13—C14—C150.2 (6)
O1W—Cu1—N2—C19−100.2 (2)C13—C14—C15—C16−179.2 (3)
O3—Cu1—O2—C725.9 (3)C13—C14—C15—C190.7 (5)
N2—Cu1—O2—C7153.2 (4)C19—C15—C16—C17−0.6 (5)
N1—Cu1—O2—C7−160.8 (3)C14—C15—C16—C17179.3 (3)
O1W—Cu1—O2—C7−64.4 (3)C15—C16—C17—C180.8 (6)
O2—Cu1—O3—C2−27.2 (3)C19—N2—C18—C170.2 (5)
N2—Cu1—O3—C2163.9 (3)Cu1—N2—C18—C17176.6 (2)
O1W—Cu1—O3—C266.2 (3)C16—C17—C18—N2−0.7 (5)
Cu1—O3—C2—C3−163.8 (2)C18—N2—C19—C150.0 (5)
Cu1—O3—C2—C117.9 (4)Cu1—N2—C19—C15−176.9 (2)
C6—C1—C2—O3178.8 (3)C18—N2—C19—C20−178.5 (3)
C7—C1—C2—O32.8 (5)Cu1—N2—C19—C204.6 (4)
C6—C1—C2—C30.4 (5)C16—C15—C19—N20.2 (5)
C7—C1—C2—C3−175.5 (3)C14—C15—C19—N2−179.7 (3)
O3—C2—C3—C4−178.9 (3)C16—C15—C19—C20178.6 (3)
C1—C2—C3—C4−0.5 (5)C14—C15—C19—C20−1.2 (5)
O3—C2—C3—C80.3 (5)C9—N1—C20—C12−2.3 (5)
C1—C2—C3—C8178.7 (3)Cu1—N1—C20—C12176.5 (3)
C2—C3—C4—C50.2 (5)C9—N1—C20—C19178.4 (3)
C8—C3—C4—C5−179.0 (3)Cu1—N1—C20—C19−2.9 (4)
C3—C4—C5—C60.2 (5)C11—C12—C20—N11.1 (5)
C4—C5—C6—C1−0.3 (6)C13—C12—C20—N1−179.4 (3)
C2—C1—C6—C5−0.1 (5)C11—C12—C20—C19−179.7 (3)
C7—C1—C6—C5176.1 (3)C13—C12—C20—C19−0.1 (5)
Cu1—O2—C7—O1169.4 (2)N2—C19—C20—N1−1.1 (4)
Cu1—O2—C7—C1−13.8 (5)C15—C19—C20—N1−179.7 (3)
C6—C1—C7—O1−4.5 (5)N2—C19—C20—C12179.5 (3)
C2—C1—C7—O1171.4 (3)C15—C19—C20—C120.9 (5)
D—H···AD—HH···AD···AD—H···A
O5—H5···O1i0.821.892.703 (4)171
O1W—H1WB···O5ii0.851.932.747 (4)162
O1W—H1WA···O4iii0.852.002.844 (4)170
Cu1—O1W2.348 (3)
Cu1—O21.898 (2)
Cu1—O31.898 (2)
Cu1—N12.016 (3)
Cu1—N22.011 (3)
O1W—Cu1—O293.40 (11)
O1W—Cu1—O390.04 (10)
O1W—Cu1—N196.50 (11)
O1W—Cu1—N297.69 (10)
O2—Cu1—O394.32 (10)
O2—Cu1—N188.77 (11)
O2—Cu1—N2166.01 (11)
O3—Cu1—N1172.59 (11)
O3—Cu1—N294.17 (11)
N1—Cu1—N281.55 (11)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5⋯O1i0.821.892.703 (4)171
O1W—H1WB⋯O5ii0.851.932.747 (4)162
O1W—H1WA⋯O4iii0.852.002.844 (4)170

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Extremely long axial Cu-N bonds in chiral one-dimensional zigzag cyanide-bridged Cu(II)(-)Ni(II) and Cu(II)(-)Pt(II) bimetallic assemblies.

Authors:  Takashiro Akitsu; Yasuaki Einaga
Journal:  Inorg Chem       Date:  2006-11-27       Impact factor: 5.165

2.  Magneto-structural correlations: synthesis of a family of end-on azido-bridged manganese(II) dinuclear compounds with S = 5 spin ground state.

Authors:  Tapan K Karmakar; Barindra K Ghosh; A Usman; Hoong-Kun Fun; Eric Rivière; Talal Mallah; Guillem Aromí; Swapan K Chandra
Journal:  Inorg Chem       Date:  2005-04-04       Impact factor: 5.165

3.  Synthesis, structures, and magnetic properties of novel mononuclear, tetranuclear, and 1D chain Mn(III) complexes involving three related asymmetrical trianionic ligands.

Authors:  Jean-Pierre Costes; Françoise Dahan; Bruno Donnadieu; Maria-Jesus Rodriguez Douton; Maria-Isabel Fernandez Garcia; Azzedine Bousseksou; Jean-Pierre Tuchagues
Journal:  Inorg Chem       Date:  2004-04-19       Impact factor: 5.165

  3 in total
  2 in total

1.  Aqua-(3-formyl-2-oxidobenzoato-κO,O)(1,10-phenanthroline-κN,N')copper(II) dimethyl-formamide solvate.

Authors:  Zhao-Wen Yu; Ling Chang; Peng Song; Min-Hui He
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-08

2.  Synthesis, crystal structure, spectroscopic properties and potential biological activities of salicylate‒neocuproine ternary copper(II) complexes.

Authors:  Lenka Kucková; Klaudia Jomová; Andrea Švorcová; Marián Valko; Peter Segľa; Ján Moncoľ; Jozef Kožíšek
Journal:  Molecules       Date:  2015-01-27       Impact factor: 4.411

  2 in total

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