Literature DB >> 21583731

Tetra-aqua-bis[4-(4-pyrid-yl)pyrimidine-2-sulfonato]copper(II) dihydrate.

Lei Li1, Gang Xu, Hai-Bin Zhu.   

Abstract

In the title complex, [Cu(C(9)H(6)N(3)O(3)S)(2)(H(2)O)(4)]·2H(2)O, the Cu(II) atom lies on an inversion centre and is coordinated by four water mol-ecules in equatorial positions and two N atoms from two 4-(4-pyrid-yl)pyrimidine-2-sulfonate ligands in apical positions. The asymmetric unit contains half of the complex and one free water mol-ecule. The water mol-ecules, including the uncoordinated water mol-ecules, and sulfonate O atoms are involved in O-H⋯O and O-H⋯N hydrogen-bonding inter-actions.

Entities:  

Year:  2009        PMID: 21583731      PMCID: PMC2977545          DOI: 10.1107/S1600536809011738

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For coordination complexes with pyridine-2 sulfonate ligands, see: Kimura et al. (1999 ▶); Lobana et al. (2004 ▶). For coordination complexes with 4-(pyridin-2-yl)pyrimidine-2-sulfonate, see: Zhu et al. (2007 ▶).

Experimental

Crystal data

[Cu(C9H6N3O3S)2(H2O)4]·2H2O M = 644.09 Monoclinic, a = 8.0727 (11) Å b = 12.1502 (16) Å c = 13.4911 (17) Å β = 95.123 (2)° V = 1318.0 (3) Å3 Z = 2 Mo Kα radiation μ = 1.06 mm−1 T = 298 K 0.12 × 0.10 × 0.08 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.884, T max = 0.920 7057 measured reflections 2459 independent reflections 1786 reflections with I > 2σ(I) R int = 0.079

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.105 S = 1.00 2459 reflections 197 parameters 9 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT-Plus (Bruker, 2007 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809011738/at2756sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809011738/at2756Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C9H6N3O3S)2(H2O)4]·2H2OF(000) = 662
Mr = 644.09Dx = 1.623 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2459 reflections
a = 8.0727 (11) Åθ = 2.3–25.5°
b = 12.1502 (16) ŵ = 1.06 mm1
c = 13.4911 (17) ÅT = 298 K
β = 95.123 (2)°Block, blue
V = 1318.0 (3) Å30.12 × 0.10 × 0.08 mm
Z = 2
Bruker APEXII CCD area-detector diffractometer2459 independent reflections
Radiation source: fine-focus sealed tube1786 reflections with I > 2σ(I)
graphiteRint = 0.079
φ and ω scansθmax = 25.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −9→9
Tmin = 0.884, Tmax = 0.920k = −14→12
7057 measured reflectionsl = −16→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.044P)2] where P = (Fo2 + 2Fc2)/3
2459 reflections(Δ/σ)max < 0.001
197 parametersΔρmax = 0.33 e Å3
9 restraintsΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu11.00000.50000.50000.0309 (6)
S10.7319 (3)−0.21520 (17)0.67968 (16)0.0350 (7)
C10.7066 (10)−0.1463 (7)0.5611 (6)0.0296 (19)
C20.6103 (12)−0.1450 (8)0.3997 (7)0.044 (2)
H20.5582−0.17930.34360.053*
C30.6619 (11)−0.0369 (7)0.3918 (7)0.039 (2)
H30.64600.00090.33180.047*
C40.7378 (10)0.0130 (7)0.4763 (6)0.030 (2)
C50.8025 (10)0.1277 (6)0.4787 (6)0.0285 (19)
C60.7554 (11)0.2040 (7)0.4050 (6)0.037 (2)
H60.68230.18390.35080.044*
C70.8170 (11)0.3090 (7)0.4123 (7)0.037 (2)
H70.78320.35900.36240.044*
C80.9733 (11)0.2692 (7)0.5587 (6)0.032 (2)
H81.04960.29100.61070.038*
C90.9145 (11)0.1623 (7)0.5569 (6)0.033 (2)
H90.94970.11370.60770.040*
H1W0.707 (11)0.500 (5)0.480 (5)0.080*
H2W0.693 (10)0.617 (5)0.471 (6)0.080*
H3W0.881 (8)0.562 (5)0.658 (7)0.080*
H4W0.931 (11)0.455 (5)0.681 (6)0.080*
H5W0.531 (10)0.463 (9)0.341 (4)0.080*
H6W0.631 (7)0.518 (8)0.286 (6)0.080*
N10.7598 (8)−0.0431 (6)0.5630 (5)0.0307 (17)
N20.6322 (9)−0.2021 (6)0.4845 (5)0.0386 (19)
N30.9233 (9)0.3430 (5)0.4875 (5)0.0305 (16)
O10.8989 (8)−0.1917 (6)0.7206 (5)0.0557 (19)
O20.7032 (8)−0.3316 (5)0.6583 (5)0.0497 (18)
O30.6036 (8)−0.1672 (5)0.7337 (4)0.0464 (17)
O1W0.7375 (9)0.5611 (6)0.4501 (6)0.059 (2)
O2W0.9469 (8)0.5109 (5)0.6488 (5)0.0445 (17)
O3W0.5402 (9)0.4870 (7)0.2846 (6)0.062 (2)
U11U22U33U12U13U23
Cu10.0474 (10)0.0141 (8)0.0317 (9)−0.0047 (7)0.0059 (7)0.0003 (6)
S10.0505 (15)0.0172 (12)0.0378 (14)0.0007 (10)0.0069 (11)0.0024 (9)
C10.037 (5)0.019 (4)0.033 (5)0.000 (4)0.008 (4)−0.003 (4)
C20.059 (6)0.033 (6)0.039 (6)−0.009 (5)−0.004 (5)−0.007 (5)
C30.056 (6)0.024 (5)0.036 (5)−0.006 (4)−0.001 (4)0.005 (4)
C40.035 (5)0.021 (5)0.034 (5)0.000 (4)0.003 (4)−0.001 (4)
C50.037 (5)0.017 (4)0.032 (5)−0.003 (4)0.005 (4)0.001 (4)
C60.043 (5)0.027 (5)0.038 (5)−0.005 (4)−0.006 (4)0.002 (4)
C70.046 (5)0.022 (5)0.040 (5)−0.001 (4)−0.004 (4)0.010 (4)
C80.044 (5)0.021 (5)0.030 (5)−0.004 (4)0.002 (4)−0.002 (4)
C90.049 (5)0.018 (4)0.033 (5)−0.001 (4)0.003 (4)0.006 (4)
N10.044 (4)0.017 (4)0.032 (4)−0.002 (3)0.005 (3)0.001 (3)
N20.055 (5)0.023 (4)0.038 (4)−0.007 (4)0.002 (4)0.000 (3)
N30.042 (4)0.018 (4)0.032 (4)−0.001 (3)0.005 (3)0.002 (3)
O10.056 (4)0.046 (5)0.062 (4)−0.001 (3)−0.011 (3)0.016 (4)
O20.080 (5)0.015 (3)0.056 (4)−0.001 (3)0.016 (4)0.003 (3)
O30.064 (4)0.037 (4)0.040 (4)0.008 (3)0.015 (3)−0.002 (3)
O1W0.068 (5)0.027 (4)0.083 (5)0.005 (4)0.007 (4)−0.012 (4)
O2W0.061 (4)0.024 (4)0.050 (4)0.003 (3)0.016 (3)0.006 (3)
O3W0.059 (5)0.058 (5)0.067 (5)−0.005 (4)−0.004 (4)0.009 (4)
Cu1—N32.008 (7)C4—N11.352 (10)
Cu1—N3i2.008 (7)C4—C51.487 (11)
Cu1—O2W2.094 (6)C5—C61.388 (11)
Cu1—O2Wi2.094 (6)C5—C91.391 (11)
Cu1—O1W2.289 (7)C6—C71.370 (12)
Cu1—O1Wi2.289 (7)C6—H60.9300
Cu1—H1W2.36 (9)C7—N31.335 (11)
Cu1—H3W2.53 (7)C7—H70.9300
S1—O11.439 (7)C8—N31.349 (10)
S1—O31.442 (6)C8—C91.382 (11)
S1—O21.458 (6)C8—H80.9300
S1—C11.801 (8)C9—H90.9300
C1—N11.324 (10)O1W—H1W0.89 (3)
C1—N21.334 (10)O1W—H2W0.83 (7)
C2—N21.336 (11)O2W—H3W0.83 (6)
C2—C31.385 (12)O2W—H4W0.82 (7)
C2—H20.9300O3W—H5W0.82 (6)
C3—C41.384 (12)O3W—H6W0.82 (7)
C3—H30.9300
N3—Cu1—N3i180.000 (1)N2—C2—C3122.7 (8)
N3—Cu1—O2W93.0 (3)N2—C2—H2118.7
N3i—Cu1—O2W87.0 (3)C3—C2—H2118.6
N3—Cu1—O2Wi87.0 (3)C2—C3—C4117.8 (8)
N3i—Cu1—O2Wi93.0 (3)C2—C3—H3121.1
O2W—Cu1—O2Wi180.000 (1)C4—C3—H3121.1
N3—Cu1—O1W90.7 (3)N1—C4—C3120.3 (8)
N3i—Cu1—O1W89.3 (3)N1—C4—C5115.8 (7)
O2W—Cu1—O1W89.9 (3)C3—C4—C5123.9 (8)
O2Wi—Cu1—O1W90.1 (3)C6—C5—C9117.3 (8)
N3—Cu1—O1Wi89.3 (3)C6—C5—C4122.5 (8)
N3i—Cu1—O1Wi90.7 (3)C9—C5—C4120.2 (7)
O2W—Cu1—O1Wi90.1 (3)C7—C6—C5119.7 (8)
O2Wi—Cu1—O1Wi89.9 (3)C7—C6—H6120.1
O1W—Cu1—O1Wi180.000 (1)C5—C6—H6120.1
N3—Cu1—H1W72.1 (15)N3—C7—C6123.2 (8)
N3i—Cu1—H1W107.9 (15)N3—C7—H7118.5
O2W—Cu1—H1W79.5 (18)C6—C7—H7118.4
O2Wi—Cu1—H1W100.5 (18)N3—C8—C9122.1 (8)
O1Wi—Cu1—H1W158.0 (4)N3—C8—H8119.0
N3—Cu1—H3W102.5 (19)C9—C8—H8119.0
N3i—Cu1—H3W77.5 (19)C8—C9—C5119.8 (8)
O2W—Cu1—H3W17.7 (12)C8—C9—H9120.1
O2Wi—Cu1—H3W162.3 (12)C5—C9—H9120.1
O1W—Cu1—H3W75.0 (16)C1—N1—C4116.4 (7)
O1Wi—Cu1—H3W105.0 (16)C1—N2—C2114.6 (8)
H1W—Cu1—H3W69 (3)C8—N3—C7117.9 (7)
O1—S1—O3114.6 (4)C8—N3—Cu1120.1 (6)
O1—S1—O2113.3 (4)C7—N3—Cu1122.0 (6)
O3—S1—O2112.6 (4)Cu1—O1W—H1W83 (6)
O1—S1—C1106.0 (4)Cu1—O1W—H2W126 (7)
O3—S1—C1103.4 (4)H1W—O1W—H2W112 (4)
O2—S1—C1105.8 (4)Cu1—O2W—H3W113 (6)
N1—C1—N2128.2 (8)Cu1—O2W—H4W121 (7)
N1—C1—S1114.4 (6)H3W—O2W—H4W114 (8)
N2—C1—S1117.4 (6)H5W—O3W—H6W107 (8)
D—H···AD—HH···AD···AD—H···A
O1W—H2W···O2ii0.83 (7)2.60 (7)3.130 (9)123 (7)
O1W—H2W···N2ii0.83 (7)2.27 (4)3.047 (10)158 (7)
O2W—H4W···O3iii0.82 (7)1.91 (7)2.734 (9)175 (11)
O2W—H3W···O2ii0.83 (6)1.93 (6)2.756 (9)169 (10)
O2W—H3W···S1ii0.83 (6)2.99 (4)3.794 (7)163 (7)
O3W—H5W···O2iv0.82 (6)2.47 (7)2.879 (10)111 (6)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H2W⋯O2i0.83 (7)2.60 (7)3.130 (9)123 (7)
O1W—H2W⋯N2i0.83 (7)2.27 (4)3.047 (10)158 (7)
O2W—H4W⋯O3ii0.82 (7)1.91 (7)2.734 (9)175 (11)
O2W—H3W⋯O2i0.83 (6)1.93 (6)2.756 (9)169 (10)
O3W—H5W⋯O2iii0.82 (6)2.47 (7)2.879 (10)111 (6)

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-22

3.  Bis(acetato-κO,O')bis-[4-(dimethyl-amino)-pyridine-κN]copper(II).

Authors:  Meriem Benslimane; Hocine Merazig; Jean-Claude Daran
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-22

4.  Tetra-μ-acetato-κO:O'-bis-{[2-methyl-sulfanyl-4-(pyridin-4-yl-κN)pyrimidine]-copper(II)}(Cu-Cu).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-30
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