Literature DB >> 21583709

2-[(E)-2-(1H-Indol-3-yl)ethen-yl]-1-methyl-pyridinium 4-chloro-benzene-sulfonate.

Thawanrat Kobkeatthawin, Suchada Chantrapromma, Hoong-Kun Fun.   

Abstract

In the title compound, C(16)H(15)N(2) (+)·C(6)H(4)ClO(3)S(-), the cation exists in an E configuration with respect to the central C=C bond and is approximately planar, with a dihedral angle of 2.95 (5)° between the pyridinium and indole rings. The mean plane of the π-conjugated system of the cation and the benzene ring of the anion are inclined to each other at a dihedral angle of 69.65 (4)°. In the crystal packing, the cations are stacked in an anti-parallel manner along the a axis, resulting in a π-π inter-action with a centroid-centroid distance of 3.5889 (7) Å. The anions are linked into a chain along the a axis by weak C-H⋯O inter-actions. The cations are linked with the anions into a three-dimensional network by N-H⋯O hydrogen bonds and weak C-H⋯O inter-actions. There are also short O⋯Cl [3.1272 (10) Å] and C⋯O [3.1432 (14)-3.3753 (14) Å] contacts. The crystal structure is further stabilized by C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21583709      PMCID: PMC2977504          DOI: 10.1107/S1600536809029547

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For background to non-linear optical materials research, see: Ogawa et al. (2008 ▶); Weir et al. (2003 ▶); Yang et al. (2007 ▶). For related structures, see: Chanawanno et al. (2008 ▶); Chantrapromma et al. (2006 ▶, 2007 ▶, 2008 ▶, 2009 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C16H15N2 +·C6H4ClO3S M = 426.91 Monoclinic, a = 7.4891 (1) Å b = 13.1650 (1) Å c = 20.3428 (2) Å β = 98.801 (1)° V = 1982.06 (4) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 100 K 0.34 × 0.28 × 0.19 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.899, T max = 0.942 39049 measured reflections 8706 independent reflections 7032 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.110 S = 1.05 8706 reflections 267 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.88 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809029547/is2441sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029547/is2441Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15N2+·C6H4ClO3SF(000) = 888
Mr = 426.91Dx = 1.431 Mg m3
Monoclinic, P21/cMelting point = 457–459 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 7.4891 (1) ÅCell parameters from 8706 reflections
b = 13.1650 (1) Åθ = 1.8–35.0°
c = 20.3428 (2) ŵ = 0.33 mm1
β = 98.801 (1)°T = 100 K
V = 1982.06 (4) Å3Block, yellow
Z = 40.34 × 0.28 × 0.19 mm
Bruker APEXII CCD area-detector diffractometer8706 independent reflections
Radiation source: sealed tube7032 reflections with I > 2σ(I)
graphiteRint = 0.034
φ and ω scansθmax = 35.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −12→12
Tmin = 0.899, Tmax = 0.942k = −21→16
39049 measured reflectionsl = −32→32
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0515P)2 + 0.614P] where P = (Fo2 + 2Fc2)/3
8706 reflections(Δ/σ)max = 0.001
267 parametersΔρmax = 0.88 e Å3
0 restraintsΔρmin = −0.41 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.55212 (4)0.54773 (2)0.181673 (15)0.02519 (7)
S1−0.02841 (3)0.876545 (19)0.222068 (12)0.01458 (6)
O1−0.17202 (11)0.82466 (7)0.24875 (5)0.02482 (17)
O2−0.08774 (12)0.92193 (7)0.15750 (4)0.02477 (17)
O30.07291 (12)0.94718 (7)0.26916 (5)0.02529 (18)
N10.23969 (12)0.71072 (7)0.41746 (4)0.01633 (15)
N20.22567 (13)0.29591 (8)0.64537 (5)0.02030 (17)
H1N20.208 (2)0.2594 (15)0.6807 (9)0.037 (5)*
C10.21569 (15)0.80936 (9)0.39837 (5)0.02025 (19)
H1A0.23590.82830.35610.024*
C20.16256 (16)0.88143 (9)0.43974 (6)0.0221 (2)
H2A0.14550.94850.42590.026*
C30.13459 (16)0.85187 (9)0.50329 (6)0.0224 (2)
H3A0.10080.89970.53270.027*
C40.15718 (15)0.75206 (9)0.52220 (5)0.02003 (19)
H4A0.13740.73280.56450.024*
C50.20982 (14)0.67805 (8)0.47878 (5)0.01632 (17)
C60.23338 (15)0.57173 (8)0.49536 (5)0.01806 (18)
H6A0.27060.52820.46410.022*
C70.20377 (14)0.53228 (8)0.55435 (5)0.01702 (17)
H7A0.16800.57770.58480.020*
C80.22168 (14)0.42820 (8)0.57473 (5)0.01636 (17)
C90.19715 (15)0.39707 (9)0.63827 (5)0.01877 (18)
H9A0.16570.43980.67110.023*
C100.26815 (14)0.25655 (8)0.58670 (5)0.01868 (18)
C110.30803 (16)0.15650 (9)0.57189 (6)0.0239 (2)
H11A0.30970.10500.60330.029*
C120.34503 (17)0.13712 (10)0.50843 (7)0.0270 (2)
H12A0.37310.07130.49690.032*
C130.34089 (17)0.21514 (10)0.46122 (6)0.0267 (2)
H13A0.36460.19960.41880.032*
C140.30232 (16)0.31472 (9)0.47616 (5)0.0216 (2)
H14A0.30010.36560.44430.026*
C150.26664 (14)0.33719 (8)0.54046 (5)0.01706 (17)
C160.29792 (15)0.63874 (9)0.36910 (5)0.01985 (19)
H16A0.40800.60610.38860.030*
H16B0.31780.67490.32990.030*
H16C0.20580.58840.35740.030*
C170.13112 (13)0.78168 (8)0.20886 (5)0.01531 (17)
C180.31082 (14)0.81082 (8)0.20881 (5)0.01712 (17)
H18A0.34420.87850.21550.021*
C190.43933 (14)0.73877 (8)0.19873 (5)0.01824 (18)
H19A0.55870.75770.19810.022*
C200.38669 (15)0.63786 (8)0.18961 (5)0.01780 (18)
C210.20887 (15)0.60731 (8)0.18910 (5)0.01905 (19)
H21A0.17640.53950.18260.023*
C220.07961 (14)0.68040 (8)0.19856 (5)0.01777 (18)
H22A−0.04030.66150.19800.021*
U11U22U33U12U13U23
Cl10.02721 (14)0.01858 (13)0.03119 (14)0.00623 (10)0.00897 (10)0.00183 (10)
S10.01485 (10)0.01459 (11)0.01460 (10)0.00137 (8)0.00322 (7)0.00272 (8)
O10.0196 (4)0.0241 (4)0.0330 (4)−0.0001 (3)0.0107 (3)0.0088 (3)
O20.0280 (4)0.0255 (4)0.0211 (4)0.0071 (3)0.0046 (3)0.0085 (3)
O30.0208 (4)0.0233 (4)0.0310 (4)0.0017 (3)0.0015 (3)−0.0100 (3)
N10.0178 (4)0.0155 (4)0.0150 (3)−0.0022 (3)0.0004 (3)0.0002 (3)
N20.0231 (4)0.0187 (4)0.0190 (4)−0.0001 (3)0.0028 (3)0.0044 (3)
C10.0227 (5)0.0176 (5)0.0196 (4)−0.0029 (4)0.0003 (4)0.0032 (4)
C20.0240 (5)0.0156 (5)0.0254 (5)0.0000 (4)0.0000 (4)0.0021 (4)
C30.0244 (5)0.0175 (5)0.0247 (5)0.0024 (4)0.0019 (4)−0.0031 (4)
C40.0238 (5)0.0181 (5)0.0182 (4)0.0022 (4)0.0034 (4)−0.0008 (4)
C50.0177 (4)0.0162 (4)0.0147 (4)−0.0002 (3)0.0015 (3)0.0006 (3)
C60.0227 (5)0.0150 (4)0.0169 (4)0.0016 (4)0.0045 (3)0.0001 (3)
C70.0190 (4)0.0159 (4)0.0159 (4)0.0005 (3)0.0022 (3)0.0000 (3)
C80.0179 (4)0.0157 (4)0.0153 (4)0.0004 (3)0.0019 (3)0.0012 (3)
C90.0201 (4)0.0190 (5)0.0172 (4)0.0010 (4)0.0029 (3)0.0014 (3)
C100.0171 (4)0.0167 (5)0.0217 (4)0.0002 (3)0.0010 (3)0.0016 (4)
C110.0210 (5)0.0156 (5)0.0338 (6)0.0004 (4)0.0006 (4)0.0016 (4)
C120.0237 (5)0.0184 (5)0.0384 (6)0.0017 (4)0.0032 (5)−0.0064 (5)
C130.0275 (6)0.0241 (6)0.0290 (5)−0.0001 (4)0.0063 (4)−0.0089 (4)
C140.0248 (5)0.0203 (5)0.0200 (4)−0.0011 (4)0.0043 (4)−0.0030 (4)
C150.0168 (4)0.0162 (5)0.0178 (4)0.0005 (3)0.0015 (3)−0.0002 (3)
C160.0238 (5)0.0205 (5)0.0155 (4)−0.0021 (4)0.0036 (3)−0.0015 (3)
C170.0163 (4)0.0144 (4)0.0151 (4)−0.0010 (3)0.0019 (3)0.0016 (3)
C180.0177 (4)0.0146 (4)0.0190 (4)−0.0014 (3)0.0027 (3)−0.0003 (3)
C190.0167 (4)0.0172 (5)0.0208 (4)−0.0007 (3)0.0028 (3)−0.0002 (3)
C200.0209 (4)0.0155 (4)0.0174 (4)0.0029 (4)0.0041 (3)0.0007 (3)
C210.0240 (5)0.0133 (4)0.0205 (4)−0.0016 (4)0.0053 (4)−0.0005 (3)
C220.0191 (4)0.0154 (4)0.0189 (4)−0.0038 (3)0.0032 (3)0.0002 (3)
Cl1—C201.7407 (11)C8—C151.4515 (15)
S1—O11.4480 (8)C9—H9A0.9300
S1—O21.4495 (8)C10—C111.3937 (16)
S1—O31.4615 (9)C10—C151.4172 (15)
S1—C171.7769 (11)C11—C121.3848 (19)
N1—C11.3595 (14)C11—H11A0.9300
N1—C51.3699 (13)C12—C131.4033 (19)
N1—C161.4790 (14)C12—H12A0.9300
N2—C91.3531 (15)C13—C141.3862 (17)
N2—C101.3823 (15)C13—H13A0.9300
N2—H1N20.891 (18)C14—C151.4060 (15)
C1—C21.3673 (17)C14—H14A0.9300
C1—H1A0.9300C16—H16A0.9600
C2—C31.3961 (17)C16—H16B0.9600
C2—H2A0.9300C16—H16C0.9600
C3—C41.3723 (16)C17—C221.3949 (15)
C3—H3A0.9300C17—C181.3996 (14)
C4—C51.4111 (15)C18—C191.3887 (15)
C4—H4A0.9300C18—H18A0.9300
C5—C61.4442 (15)C19—C201.3901 (15)
C6—C71.3567 (14)C19—H19A0.9300
C6—H6A0.9300C20—C211.3896 (16)
C7—C81.4318 (15)C21—C221.3990 (15)
C7—H7A0.9300C21—H21A0.9300
C8—C91.3947 (14)C22—H22A0.9300
O1—S1—O2113.07 (5)C11—C10—C15123.00 (10)
O1—S1—O3113.29 (6)C12—C11—C10117.11 (11)
O2—S1—O3112.84 (6)C12—C11—H11A121.4
O1—S1—C17106.28 (5)C10—C11—H11A121.4
O2—S1—C17105.82 (5)C11—C12—C13121.10 (11)
O3—S1—C17104.64 (5)C11—C12—H12A119.5
C1—N1—C5121.81 (9)C13—C12—H12A119.5
C1—N1—C16117.49 (9)C14—C13—C12121.72 (11)
C5—N1—C16120.70 (9)C14—C13—H13A119.1
C9—N2—C10109.27 (9)C12—C13—H13A119.1
C9—N2—H1N2125.2 (12)C13—C14—C15118.59 (11)
C10—N2—H1N2125.2 (12)C13—C14—H14A120.7
N1—C1—C2121.68 (10)C15—C14—H14A120.7
N1—C1—H1A119.2C14—C15—C10118.46 (10)
C2—C1—H1A119.2C14—C15—C8135.36 (10)
C1—C2—C3118.40 (11)C10—C15—C8106.17 (9)
C1—C2—H2A120.8N1—C16—H16A109.5
C3—C2—H2A120.8N1—C16—H16B109.5
C4—C3—C2119.79 (11)H16A—C16—H16B109.5
C4—C3—H3A120.1N1—C16—H16C109.5
C2—C3—H3A120.1H16A—C16—H16C109.5
C3—C4—C5121.33 (10)H16B—C16—H16C109.5
C3—C4—H4A119.3C22—C17—C18120.38 (10)
C5—C4—H4A119.3C22—C17—S1121.17 (8)
N1—C5—C4116.96 (10)C18—C17—S1118.44 (8)
N1—C5—C6119.06 (9)C19—C18—C17120.07 (10)
C4—C5—C6123.98 (9)C19—C18—H18A120.0
C7—C6—C5123.15 (10)C17—C18—H18A120.0
C7—C6—H6A118.4C18—C19—C20118.93 (10)
C5—C6—H6A118.4C18—C19—H19A120.5
C6—C7—C8126.99 (10)C20—C19—H19A120.5
C6—C7—H7A116.5C21—C20—C19121.96 (10)
C8—C7—H7A116.5C21—C20—Cl1119.80 (8)
C9—C8—C7121.99 (10)C19—C20—Cl1118.19 (8)
C9—C8—C15106.00 (9)C20—C21—C22118.85 (10)
C7—C8—C15132.01 (9)C20—C21—H21A120.6
N2—C9—C8110.32 (10)C22—C21—H21A120.6
N2—C9—H9A124.8C17—C22—C21119.79 (10)
C8—C9—H9A124.8C17—C22—H22A120.1
N2—C10—C11128.76 (11)C21—C22—H22A120.1
N2—C10—C15108.23 (10)
C5—N1—C1—C20.81 (16)C13—C14—C15—C10−1.26 (16)
C16—N1—C1—C2−179.81 (10)C13—C14—C15—C8−179.77 (12)
N1—C1—C2—C30.65 (17)N2—C10—C15—C14−178.58 (10)
C1—C2—C3—C4−1.28 (17)C11—C10—C15—C141.74 (16)
C2—C3—C4—C50.51 (18)N2—C10—C15—C80.33 (12)
C1—N1—C5—C4−1.56 (15)C11—C10—C15—C8−179.35 (10)
C16—N1—C5—C4179.08 (9)C9—C8—C15—C14177.96 (12)
C1—N1—C5—C6178.44 (10)C7—C8—C15—C14−2.8 (2)
C16—N1—C5—C6−0.92 (14)C9—C8—C15—C10−0.68 (12)
C3—C4—C5—N10.90 (16)C7—C8—C15—C10178.61 (11)
C3—C4—C5—C6−179.10 (11)O1—S1—C17—C2225.07 (10)
N1—C5—C6—C7−178.80 (10)O2—S1—C17—C22−95.40 (9)
C4—C5—C6—C71.21 (17)O3—S1—C17—C22145.20 (9)
C5—C6—C7—C8179.27 (10)O1—S1—C17—C18−155.09 (8)
C6—C7—C8—C9176.40 (11)O2—S1—C17—C1884.44 (9)
C6—C7—C8—C15−2.78 (19)O3—S1—C17—C18−34.96 (9)
C10—N2—C9—C8−0.61 (13)C22—C17—C18—C19−0.23 (15)
C7—C8—C9—N2−178.58 (10)S1—C17—C18—C19179.92 (8)
C15—C8—C9—N20.79 (12)C17—C18—C19—C20−0.80 (15)
C9—N2—C10—C11179.81 (11)C18—C19—C20—C211.17 (16)
C9—N2—C10—C150.15 (12)C18—C19—C20—Cl1−176.49 (8)
N2—C10—C11—C12179.53 (11)C19—C20—C21—C22−0.48 (16)
C15—C10—C11—C12−0.86 (17)Cl1—C20—C21—C22177.14 (8)
C10—C11—C12—C13−0.48 (18)C18—C17—C22—C210.93 (15)
C11—C12—C13—C140.92 (19)S1—C17—C22—C21−179.23 (8)
C12—C13—C14—C15−0.01 (18)C20—C21—C22—C17−0.57 (15)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1i0.891 (18)1.864 (19)2.7541 (14)176.2 (18)
C1—H1A···O30.932.533.2380 (14)133
C7—H7A···O2ii0.932.593.3067 (14)134
C14—H14A···O2iii0.932.523.2605 (14)137
C16—H16C···O2iii0.962.373.2645 (15)156
C19—H19A···O1iv0.932.303.1432 (14)151
C21—H21A···O3iii0.932.553.1885 (14)127
C4—H4A···Cg3v0.932.853.5956 (11)138
C16—H16A···Cg1vi0.962.723.4622 (12)134
C16—H16B···Cg30.962.673.5533 (11)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O1i0.891 (18)1.864 (19)2.7541 (14)176.2 (18)
C1—H1A⋯O30.932.533.2380 (14)133
C7—H7A⋯O2ii0.932.593.3067 (14)134
C14—H14A⋯O2iii0.932.523.2605 (14)137
C16—H16C⋯O2iii0.962.373.2645 (15)156
C19—H19A⋯O1iv0.932.303.1432 (14)151
C21—H21A⋯O3iii0.932.553.1885 (14)127
C4—H4ACg3v0.932.853.5956 (11)138
C16—H16ACg1vi0.962.723.4622 (12)134
C16—H16BCg30.962.673.5533 (11)153

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) . Cg1 and Cg3 are the centroids of the N2/C8–C9/C10/C15 and C10–C15 rings, respectively.

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[(E)-2-(4-Chloro-phen-yl)ethen-yl]-1-methylpyridinium iodide monohydrate.

Authors:  Kullapa Chanawanno; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06

3.  1-Methyl-4-[(E)-2-(2-thien-yl)ethen-yl]pyridinium 4-chloro-benzene-sulfonate.

Authors:  Suchada Chantrapromma; Chotika Laksana; Pumsak Ruanwas; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-13

4.  (E)-4-[4-(Dimethyl-amino)styr-yl]-1-methyl-pyridinium 4-bromo-benzene-sulfonate.

Authors:  Suchada Chantrapromma; Patcharaporn Jansrisewangwong; Rusmeenee Musor; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-08

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.