| Literature DB >> 21583709 |
Thawanrat Kobkeatthawin, Suchada Chantrapromma, Hoong-Kun Fun.
Abstract
In the title compound, C(16)H(15)N(2) (+)·C(6)H(4)ClO(3)S(-), the cation exists in an E configuration with respect to the central C=C bond and is approximately planar, with a dihedral angle of 2.95 (5)° between the pyridinium and indole rings. The mean plane of the π-conjugated system of the cation and the benzene ring of the anion are inclined to each other at a dihedral angle of 69.65 (4)°. In the crystal packing, the cations are stacked in an anti-parallel manner along the a axis, resulting in a π-π inter-action with a centroid-centroid distance of 3.5889 (7) Å. The anions are linked into a chain along the a axis by weak C-H⋯O inter-actions. The cations are linked with the anions into a three-dimensional network by N-H⋯O hydrogen bonds and weak C-H⋯O inter-actions. There are also short O⋯Cl [3.1272 (10) Å] and C⋯O [3.1432 (14)-3.3753 (14) Å] contacts. The crystal structure is further stabilized by C-H⋯π inter-actions.Entities:
Year: 2009 PMID: 21583709 PMCID: PMC2977504 DOI: 10.1107/S1600536809029547
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H15N2+·C6H4ClO3S− | |
| Monoclinic, | Melting point = 457–459 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 8706 reflections | |
| θ = 1.8–35.0° | |
| µ = 0.33 mm−1 | |
| β = 98.801 (1)° | |
| Block, yellow | |
| 0.34 × 0.28 × 0.19 mm |
| Bruker APEXII CCD area-detector diffractometer | 8706 independent reflections |
| Radiation source: sealed tube | 7032 reflections with |
| graphite | |
| φ and ω scans | θmax = 35.0°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 39049 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 8706 reflections | (Δ/σ)max = 0.001 |
| 267 parameters | Δρmax = 0.88 e Å−3 |
| 0 restraints | Δρmin = −0.41 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cl1 | 0.55212 (4) | 0.54773 (2) | 0.181673 (15) | 0.02519 (7) | |
| S1 | −0.02841 (3) | 0.876545 (19) | 0.222068 (12) | 0.01458 (6) | |
| O1 | −0.17202 (11) | 0.82466 (7) | 0.24875 (5) | 0.02482 (17) | |
| O2 | −0.08774 (12) | 0.92193 (7) | 0.15750 (4) | 0.02477 (17) | |
| O3 | 0.07291 (12) | 0.94718 (7) | 0.26916 (5) | 0.02529 (18) | |
| N1 | 0.23969 (12) | 0.71072 (7) | 0.41746 (4) | 0.01633 (15) | |
| N2 | 0.22567 (13) | 0.29591 (8) | 0.64537 (5) | 0.02030 (17) | |
| H1N2 | 0.208 (2) | 0.2594 (15) | 0.6807 (9) | 0.037 (5)* | |
| C1 | 0.21569 (15) | 0.80936 (9) | 0.39837 (5) | 0.02025 (19) | |
| H1A | 0.2359 | 0.8283 | 0.3561 | 0.024* | |
| C2 | 0.16256 (16) | 0.88143 (9) | 0.43974 (6) | 0.0221 (2) | |
| H2A | 0.1455 | 0.9485 | 0.4259 | 0.026* | |
| C3 | 0.13459 (16) | 0.85187 (9) | 0.50329 (6) | 0.0224 (2) | |
| H3A | 0.1008 | 0.8997 | 0.5327 | 0.027* | |
| C4 | 0.15718 (15) | 0.75206 (9) | 0.52220 (5) | 0.02003 (19) | |
| H4A | 0.1374 | 0.7328 | 0.5645 | 0.024* | |
| C5 | 0.20982 (14) | 0.67805 (8) | 0.47878 (5) | 0.01632 (17) | |
| C6 | 0.23338 (15) | 0.57173 (8) | 0.49536 (5) | 0.01806 (18) | |
| H6A | 0.2706 | 0.5282 | 0.4641 | 0.022* | |
| C7 | 0.20377 (14) | 0.53228 (8) | 0.55435 (5) | 0.01702 (17) | |
| H7A | 0.1680 | 0.5777 | 0.5848 | 0.020* | |
| C8 | 0.22168 (14) | 0.42820 (8) | 0.57473 (5) | 0.01636 (17) | |
| C9 | 0.19715 (15) | 0.39707 (9) | 0.63827 (5) | 0.01877 (18) | |
| H9A | 0.1657 | 0.4398 | 0.6711 | 0.023* | |
| C10 | 0.26815 (14) | 0.25655 (8) | 0.58670 (5) | 0.01868 (18) | |
| C11 | 0.30803 (16) | 0.15650 (9) | 0.57189 (6) | 0.0239 (2) | |
| H11A | 0.3097 | 0.1050 | 0.6033 | 0.029* | |
| C12 | 0.34503 (17) | 0.13712 (10) | 0.50843 (7) | 0.0270 (2) | |
| H12A | 0.3731 | 0.0713 | 0.4969 | 0.032* | |
| C13 | 0.34089 (17) | 0.21514 (10) | 0.46122 (6) | 0.0267 (2) | |
| H13A | 0.3646 | 0.1996 | 0.4188 | 0.032* | |
| C14 | 0.30232 (16) | 0.31472 (9) | 0.47616 (5) | 0.0216 (2) | |
| H14A | 0.3001 | 0.3656 | 0.4443 | 0.026* | |
| C15 | 0.26664 (14) | 0.33719 (8) | 0.54046 (5) | 0.01706 (17) | |
| C16 | 0.29792 (15) | 0.63874 (9) | 0.36910 (5) | 0.01985 (19) | |
| H16A | 0.4080 | 0.6061 | 0.3886 | 0.030* | |
| H16B | 0.3178 | 0.6749 | 0.3299 | 0.030* | |
| H16C | 0.2058 | 0.5884 | 0.3574 | 0.030* | |
| C17 | 0.13112 (13) | 0.78168 (8) | 0.20886 (5) | 0.01531 (17) | |
| C18 | 0.31082 (14) | 0.81082 (8) | 0.20881 (5) | 0.01712 (17) | |
| H18A | 0.3442 | 0.8785 | 0.2155 | 0.021* | |
| C19 | 0.43933 (14) | 0.73877 (8) | 0.19873 (5) | 0.01824 (18) | |
| H19A | 0.5587 | 0.7577 | 0.1981 | 0.022* | |
| C20 | 0.38669 (15) | 0.63786 (8) | 0.18961 (5) | 0.01780 (18) | |
| C21 | 0.20887 (15) | 0.60731 (8) | 0.18910 (5) | 0.01905 (19) | |
| H21A | 0.1764 | 0.5395 | 0.1826 | 0.023* | |
| C22 | 0.07961 (14) | 0.68040 (8) | 0.19856 (5) | 0.01777 (18) | |
| H22A | −0.0403 | 0.6615 | 0.1980 | 0.021* |
| Cl1 | 0.02721 (14) | 0.01858 (13) | 0.03119 (14) | 0.00623 (10) | 0.00897 (10) | 0.00183 (10) |
| S1 | 0.01485 (10) | 0.01459 (11) | 0.01460 (10) | 0.00137 (8) | 0.00322 (7) | 0.00272 (8) |
| O1 | 0.0196 (4) | 0.0241 (4) | 0.0330 (4) | −0.0001 (3) | 0.0107 (3) | 0.0088 (3) |
| O2 | 0.0280 (4) | 0.0255 (4) | 0.0211 (4) | 0.0071 (3) | 0.0046 (3) | 0.0085 (3) |
| O3 | 0.0208 (4) | 0.0233 (4) | 0.0310 (4) | 0.0017 (3) | 0.0015 (3) | −0.0100 (3) |
| N1 | 0.0178 (4) | 0.0155 (4) | 0.0150 (3) | −0.0022 (3) | 0.0004 (3) | 0.0002 (3) |
| N2 | 0.0231 (4) | 0.0187 (4) | 0.0190 (4) | −0.0001 (3) | 0.0028 (3) | 0.0044 (3) |
| C1 | 0.0227 (5) | 0.0176 (5) | 0.0196 (4) | −0.0029 (4) | 0.0003 (4) | 0.0032 (4) |
| C2 | 0.0240 (5) | 0.0156 (5) | 0.0254 (5) | 0.0000 (4) | 0.0000 (4) | 0.0021 (4) |
| C3 | 0.0244 (5) | 0.0175 (5) | 0.0247 (5) | 0.0024 (4) | 0.0019 (4) | −0.0031 (4) |
| C4 | 0.0238 (5) | 0.0181 (5) | 0.0182 (4) | 0.0022 (4) | 0.0034 (4) | −0.0008 (4) |
| C5 | 0.0177 (4) | 0.0162 (4) | 0.0147 (4) | −0.0002 (3) | 0.0015 (3) | 0.0006 (3) |
| C6 | 0.0227 (5) | 0.0150 (4) | 0.0169 (4) | 0.0016 (4) | 0.0045 (3) | 0.0001 (3) |
| C7 | 0.0190 (4) | 0.0159 (4) | 0.0159 (4) | 0.0005 (3) | 0.0022 (3) | 0.0000 (3) |
| C8 | 0.0179 (4) | 0.0157 (4) | 0.0153 (4) | 0.0004 (3) | 0.0019 (3) | 0.0012 (3) |
| C9 | 0.0201 (4) | 0.0190 (5) | 0.0172 (4) | 0.0010 (4) | 0.0029 (3) | 0.0014 (3) |
| C10 | 0.0171 (4) | 0.0167 (5) | 0.0217 (4) | 0.0002 (3) | 0.0010 (3) | 0.0016 (4) |
| C11 | 0.0210 (5) | 0.0156 (5) | 0.0338 (6) | 0.0004 (4) | 0.0006 (4) | 0.0016 (4) |
| C12 | 0.0237 (5) | 0.0184 (5) | 0.0384 (6) | 0.0017 (4) | 0.0032 (5) | −0.0064 (5) |
| C13 | 0.0275 (6) | 0.0241 (6) | 0.0290 (5) | −0.0001 (4) | 0.0063 (4) | −0.0089 (4) |
| C14 | 0.0248 (5) | 0.0203 (5) | 0.0200 (4) | −0.0011 (4) | 0.0043 (4) | −0.0030 (4) |
| C15 | 0.0168 (4) | 0.0162 (5) | 0.0178 (4) | 0.0005 (3) | 0.0015 (3) | −0.0002 (3) |
| C16 | 0.0238 (5) | 0.0205 (5) | 0.0155 (4) | −0.0021 (4) | 0.0036 (3) | −0.0015 (3) |
| C17 | 0.0163 (4) | 0.0144 (4) | 0.0151 (4) | −0.0010 (3) | 0.0019 (3) | 0.0016 (3) |
| C18 | 0.0177 (4) | 0.0146 (4) | 0.0190 (4) | −0.0014 (3) | 0.0027 (3) | −0.0003 (3) |
| C19 | 0.0167 (4) | 0.0172 (5) | 0.0208 (4) | −0.0007 (3) | 0.0028 (3) | −0.0002 (3) |
| C20 | 0.0209 (4) | 0.0155 (4) | 0.0174 (4) | 0.0029 (4) | 0.0041 (3) | 0.0007 (3) |
| C21 | 0.0240 (5) | 0.0133 (4) | 0.0205 (4) | −0.0016 (4) | 0.0053 (4) | −0.0005 (3) |
| C22 | 0.0191 (4) | 0.0154 (4) | 0.0189 (4) | −0.0038 (3) | 0.0032 (3) | 0.0002 (3) |
| Cl1—C20 | 1.7407 (11) | C8—C15 | 1.4515 (15) |
| S1—O1 | 1.4480 (8) | C9—H9A | 0.9300 |
| S1—O2 | 1.4495 (8) | C10—C11 | 1.3937 (16) |
| S1—O3 | 1.4615 (9) | C10—C15 | 1.4172 (15) |
| S1—C17 | 1.7769 (11) | C11—C12 | 1.3848 (19) |
| N1—C1 | 1.3595 (14) | C11—H11A | 0.9300 |
| N1—C5 | 1.3699 (13) | C12—C13 | 1.4033 (19) |
| N1—C16 | 1.4790 (14) | C12—H12A | 0.9300 |
| N2—C9 | 1.3531 (15) | C13—C14 | 1.3862 (17) |
| N2—C10 | 1.3823 (15) | C13—H13A | 0.9300 |
| N2—H1N2 | 0.891 (18) | C14—C15 | 1.4060 (15) |
| C1—C2 | 1.3673 (17) | C14—H14A | 0.9300 |
| C1—H1A | 0.9300 | C16—H16A | 0.9600 |
| C2—C3 | 1.3961 (17) | C16—H16B | 0.9600 |
| C2—H2A | 0.9300 | C16—H16C | 0.9600 |
| C3—C4 | 1.3723 (16) | C17—C22 | 1.3949 (15) |
| C3—H3A | 0.9300 | C17—C18 | 1.3996 (14) |
| C4—C5 | 1.4111 (15) | C18—C19 | 1.3887 (15) |
| C4—H4A | 0.9300 | C18—H18A | 0.9300 |
| C5—C6 | 1.4442 (15) | C19—C20 | 1.3901 (15) |
| C6—C7 | 1.3567 (14) | C19—H19A | 0.9300 |
| C6—H6A | 0.9300 | C20—C21 | 1.3896 (16) |
| C7—C8 | 1.4318 (15) | C21—C22 | 1.3990 (15) |
| C7—H7A | 0.9300 | C21—H21A | 0.9300 |
| C8—C9 | 1.3947 (14) | C22—H22A | 0.9300 |
| O1—S1—O2 | 113.07 (5) | C11—C10—C15 | 123.00 (10) |
| O1—S1—O3 | 113.29 (6) | C12—C11—C10 | 117.11 (11) |
| O2—S1—O3 | 112.84 (6) | C12—C11—H11A | 121.4 |
| O1—S1—C17 | 106.28 (5) | C10—C11—H11A | 121.4 |
| O2—S1—C17 | 105.82 (5) | C11—C12—C13 | 121.10 (11) |
| O3—S1—C17 | 104.64 (5) | C11—C12—H12A | 119.5 |
| C1—N1—C5 | 121.81 (9) | C13—C12—H12A | 119.5 |
| C1—N1—C16 | 117.49 (9) | C14—C13—C12 | 121.72 (11) |
| C5—N1—C16 | 120.70 (9) | C14—C13—H13A | 119.1 |
| C9—N2—C10 | 109.27 (9) | C12—C13—H13A | 119.1 |
| C9—N2—H1N2 | 125.2 (12) | C13—C14—C15 | 118.59 (11) |
| C10—N2—H1N2 | 125.2 (12) | C13—C14—H14A | 120.7 |
| N1—C1—C2 | 121.68 (10) | C15—C14—H14A | 120.7 |
| N1—C1—H1A | 119.2 | C14—C15—C10 | 118.46 (10) |
| C2—C1—H1A | 119.2 | C14—C15—C8 | 135.36 (10) |
| C1—C2—C3 | 118.40 (11) | C10—C15—C8 | 106.17 (9) |
| C1—C2—H2A | 120.8 | N1—C16—H16A | 109.5 |
| C3—C2—H2A | 120.8 | N1—C16—H16B | 109.5 |
| C4—C3—C2 | 119.79 (11) | H16A—C16—H16B | 109.5 |
| C4—C3—H3A | 120.1 | N1—C16—H16C | 109.5 |
| C2—C3—H3A | 120.1 | H16A—C16—H16C | 109.5 |
| C3—C4—C5 | 121.33 (10) | H16B—C16—H16C | 109.5 |
| C3—C4—H4A | 119.3 | C22—C17—C18 | 120.38 (10) |
| C5—C4—H4A | 119.3 | C22—C17—S1 | 121.17 (8) |
| N1—C5—C4 | 116.96 (10) | C18—C17—S1 | 118.44 (8) |
| N1—C5—C6 | 119.06 (9) | C19—C18—C17 | 120.07 (10) |
| C4—C5—C6 | 123.98 (9) | C19—C18—H18A | 120.0 |
| C7—C6—C5 | 123.15 (10) | C17—C18—H18A | 120.0 |
| C7—C6—H6A | 118.4 | C18—C19—C20 | 118.93 (10) |
| C5—C6—H6A | 118.4 | C18—C19—H19A | 120.5 |
| C6—C7—C8 | 126.99 (10) | C20—C19—H19A | 120.5 |
| C6—C7—H7A | 116.5 | C21—C20—C19 | 121.96 (10) |
| C8—C7—H7A | 116.5 | C21—C20—Cl1 | 119.80 (8) |
| C9—C8—C7 | 121.99 (10) | C19—C20—Cl1 | 118.19 (8) |
| C9—C8—C15 | 106.00 (9) | C20—C21—C22 | 118.85 (10) |
| C7—C8—C15 | 132.01 (9) | C20—C21—H21A | 120.6 |
| N2—C9—C8 | 110.32 (10) | C22—C21—H21A | 120.6 |
| N2—C9—H9A | 124.8 | C17—C22—C21 | 119.79 (10) |
| C8—C9—H9A | 124.8 | C17—C22—H22A | 120.1 |
| N2—C10—C11 | 128.76 (11) | C21—C22—H22A | 120.1 |
| N2—C10—C15 | 108.23 (10) | ||
| C5—N1—C1—C2 | 0.81 (16) | C13—C14—C15—C10 | −1.26 (16) |
| C16—N1—C1—C2 | −179.81 (10) | C13—C14—C15—C8 | −179.77 (12) |
| N1—C1—C2—C3 | 0.65 (17) | N2—C10—C15—C14 | −178.58 (10) |
| C1—C2—C3—C4 | −1.28 (17) | C11—C10—C15—C14 | 1.74 (16) |
| C2—C3—C4—C5 | 0.51 (18) | N2—C10—C15—C8 | 0.33 (12) |
| C1—N1—C5—C4 | −1.56 (15) | C11—C10—C15—C8 | −179.35 (10) |
| C16—N1—C5—C4 | 179.08 (9) | C9—C8—C15—C14 | 177.96 (12) |
| C1—N1—C5—C6 | 178.44 (10) | C7—C8—C15—C14 | −2.8 (2) |
| C16—N1—C5—C6 | −0.92 (14) | C9—C8—C15—C10 | −0.68 (12) |
| C3—C4—C5—N1 | 0.90 (16) | C7—C8—C15—C10 | 178.61 (11) |
| C3—C4—C5—C6 | −179.10 (11) | O1—S1—C17—C22 | 25.07 (10) |
| N1—C5—C6—C7 | −178.80 (10) | O2—S1—C17—C22 | −95.40 (9) |
| C4—C5—C6—C7 | 1.21 (17) | O3—S1—C17—C22 | 145.20 (9) |
| C5—C6—C7—C8 | 179.27 (10) | O1—S1—C17—C18 | −155.09 (8) |
| C6—C7—C8—C9 | 176.40 (11) | O2—S1—C17—C18 | 84.44 (9) |
| C6—C7—C8—C15 | −2.78 (19) | O3—S1—C17—C18 | −34.96 (9) |
| C10—N2—C9—C8 | −0.61 (13) | C22—C17—C18—C19 | −0.23 (15) |
| C7—C8—C9—N2 | −178.58 (10) | S1—C17—C18—C19 | 179.92 (8) |
| C15—C8—C9—N2 | 0.79 (12) | C17—C18—C19—C20 | −0.80 (15) |
| C9—N2—C10—C11 | 179.81 (11) | C18—C19—C20—C21 | 1.17 (16) |
| C9—N2—C10—C15 | 0.15 (12) | C18—C19—C20—Cl1 | −176.49 (8) |
| N2—C10—C11—C12 | 179.53 (11) | C19—C20—C21—C22 | −0.48 (16) |
| C15—C10—C11—C12 | −0.86 (17) | Cl1—C20—C21—C22 | 177.14 (8) |
| C10—C11—C12—C13 | −0.48 (18) | C18—C17—C22—C21 | 0.93 (15) |
| C11—C12—C13—C14 | 0.92 (19) | S1—C17—C22—C21 | −179.23 (8) |
| C12—C13—C14—C15 | −0.01 (18) | C20—C21—C22—C17 | −0.57 (15) |
| H··· | ||||
| N2—H1N2···O1i | 0.891 (18) | 1.864 (19) | 2.7541 (14) | 176.2 (18) |
| C1—H1A···O3 | 0.93 | 2.53 | 3.2380 (14) | 133 |
| C7—H7A···O2ii | 0.93 | 2.59 | 3.3067 (14) | 134 |
| C14—H14A···O2iii | 0.93 | 2.52 | 3.2605 (14) | 137 |
| C16—H16C···O2iii | 0.96 | 2.37 | 3.2645 (15) | 156 |
| C19—H19A···O1iv | 0.93 | 2.30 | 3.1432 (14) | 151 |
| C21—H21A···O3iii | 0.93 | 2.55 | 3.1885 (14) | 127 |
| C4—H4A···Cg3v | 0.93 | 2.85 | 3.5956 (11) | 138 |
| C16—H16A···Cg1vi | 0.96 | 2.72 | 3.4622 (12) | 134 |
| C16—H16B···Cg3 | 0.96 | 2.67 | 3.5533 (11) | 153 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.891 (18) | 1.864 (19) | 2.7541 (14) | 176.2 (18) |
| C1—H1 | 0.93 | 2.53 | 3.2380 (14) | 133 |
| C7—H7 | 0.93 | 2.59 | 3.3067 (14) | 134 |
| C14—H14 | 0.93 | 2.52 | 3.2605 (14) | 137 |
| C16—H16 | 0.96 | 2.37 | 3.2645 (15) | 156 |
| C19—H19 | 0.93 | 2.30 | 3.1432 (14) | 151 |
| C21—H21 | 0.93 | 2.55 | 3.1885 (14) | 127 |
| C4—H4 | 0.93 | 2.85 | 3.5956 (11) | 138 |
| C16—H16 | 0.96 | 2.72 | 3.4622 (12) | 134 |
| C16—H16 | 0.96 | 2.67 | 3.5533 (11) | 153 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) . Cg1 and Cg3 are the centroids of the N2/C8–C9/C10/C15 and C10–C15 rings, respectively.