Literature DB >> 21583677

4-[(1E,3E,5E)-6-(4-Pyrid-yl)hexa-1,3,5-trien-yl]pyridine.

Mamoun M Bader1.   

Abstract

The two independent mol-ecules in the asymmetric unit of the title compound, C(16)H(14)N(2), are planar [dihedral angle between the terminal pyridine rings = 1.76 (2)°] and each display an all-trans configuration of C=C double bonds. One of the two mol-ecules lies about a center of inversion. The dihedral angle between the two pyridine rings in the mol-ecule lying on a general position is 1.65 (2)°.

Entities:  

Year:  2009        PMID: 21583677      PMCID: PMC2977225          DOI: 10.1107/S1600536809029092

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For acceptor-terminated polyenes, see: Gao et al. (2004 ▶). For the synthesis, see: Woitellier et al. (1989 ▶). For a related structure, see: Pham (2009 ▶).

Experimental

Crystal data

C16H14N2 M = 234.29 Monoclinic, a = 5.837 (1) Å b = 17.171 (4) Å c = 19.227 (4) Å β = 97.685 (4)° V = 1909.8 (7) Å3 Z = 6 Mo Kα radiation μ = 0.07 mm−1 T = 173 K 0.44 × 0.24 × 0.22 mm

Data collection

Bruker SMART Platform CCD diffractometer Absorption correction: none 18771 measured reflections 3366 independent reflections 2460 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.089 S = 1.01 3366 reflections 328 parameters All H-atom parameters refined Δρmax = 0.09 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809029092/ng2615sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029092/ng2615Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14N2F(000) = 744
Mr = 234.29Dx = 1.222 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 867 reflections
a = 5.837 (1) Åθ = 2.5–27.5°
b = 17.171 (4) ŵ = 0.07 mm1
c = 19.227 (4) ÅT = 173 K
β = 97.685 (4)°Block, yellow
V = 1909.8 (7) Å30.44 × 0.24 × 0.22 mm
Z = 6
Bruker SMART Platform CCD diffractometer2460 reflections with I > 2σ(I)
Radiation source: normal-focus sealed tubeRint = 0.028
graphiteθmax = 25.0°, θmin = 1.6°
ω scansh = −6→6
18771 measured reflectionsk = −20→20
3366 independent reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089All H-atom parameters refined
S = 1.01w = 1/[σ2(Fo2) + (0.048P)2 + 0.1535P] where P = (Fo2 + 2Fc2)/3
3366 reflections(Δ/σ)max = 0.001
328 parametersΔρmax = 0.09 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.5720 (2)0.58755 (7)−0.07734 (6)0.0569 (3)
N2−0.45576 (19)1.10512 (6)0.36976 (5)0.0481 (3)
N3−0.00550 (19)1.24674 (6)0.23495 (6)0.0497 (3)
C10.6991 (3)0.65228 (9)−0.06772 (8)0.0543 (4)
H10.838 (3)0.6547 (8)−0.0931 (7)0.062 (4)*
C20.6494 (2)0.71361 (8)−0.02588 (7)0.0462 (3)
H20.751 (2)0.7581 (8)−0.0194 (7)0.052 (4)*
C30.4553 (2)0.71081 (7)0.00886 (6)0.0388 (3)
C40.3222 (2)0.64283 (7)−0.00011 (7)0.0431 (3)
H40.185 (2)0.6363 (7)0.0227 (6)0.044 (3)*
C50.3870 (3)0.58440 (8)−0.04271 (7)0.0511 (4)
H50.293 (2)0.5370 (8)−0.0495 (6)0.056 (4)*
C6−0.5830 (2)1.04076 (8)0.35549 (7)0.0479 (3)
H6−0.722 (3)1.0359 (8)0.3800 (7)0.060 (4)*
C7−0.5305 (2)0.98292 (8)0.31014 (7)0.0445 (3)
H7−0.628 (2)0.9374 (8)0.3018 (6)0.049 (4)*
C8−0.3348 (2)0.98987 (7)0.27589 (6)0.0385 (3)
C9−0.2039 (2)1.05746 (7)0.29001 (6)0.0411 (3)
H9−0.064 (2)1.0657 (7)0.2688 (6)0.041 (3)*
C10−0.2692 (2)1.11169 (8)0.33646 (7)0.0449 (3)
H10−0.176 (2)1.1575 (7)0.3472 (6)0.044 (3)*
C11−0.1535 (2)1.23391 (8)0.17687 (7)0.0487 (3)
H11−0.298 (2)1.2632 (7)0.1723 (7)0.055 (4)*
C12−0.1104 (2)1.18348 (8)0.12416 (7)0.0453 (3)
H12−0.223 (2)1.1766 (8)0.0831 (7)0.057 (4)*
C130.0985 (2)1.14333 (7)0.12916 (6)0.0384 (3)
C140.2518 (2)1.15541 (7)0.19037 (7)0.0415 (3)
H140.401 (2)1.1294 (7)0.1986 (6)0.049 (4)*
C150.1931 (2)1.20645 (8)0.24030 (7)0.0473 (3)
H150.300 (2)1.2158 (8)0.2839 (7)0.059 (4)*
C160.3959 (2)0.77741 (7)0.05039 (6)0.0414 (3)
H160.504 (2)0.8205 (7)0.0528 (6)0.040 (3)*
C170.2082 (2)0.78441 (7)0.08307 (6)0.0404 (3)
H170.100 (2)0.7412 (7)0.0822 (6)0.043 (3)*
C180.1516 (2)0.85257 (7)0.12091 (6)0.0432 (3)
H180.260 (2)0.8965 (7)0.1235 (6)0.049 (4)*
C19−0.0351 (2)0.85901 (7)0.15427 (7)0.0431 (3)
H19−0.140 (2)0.8147 (7)0.1538 (6)0.047 (4)*
C20−0.0919 (2)0.92526 (7)0.19440 (6)0.0414 (3)
H200.012 (2)0.9683 (8)0.1966 (6)0.044 (3)*
C21−0.2736 (2)0.92738 (7)0.23017 (6)0.0420 (3)
H21−0.376 (2)0.8825 (8)0.2281 (6)0.049 (4)*
C220.1515 (2)1.09529 (7)0.07030 (7)0.0420 (3)
H220.030 (2)1.0935 (7)0.0295 (7)0.050 (4)*
C230.3498 (2)1.05781 (7)0.06546 (7)0.0417 (3)
H230.473 (2)1.0581 (7)0.1052 (6)0.044 (3)*
C240.3997 (2)1.01778 (7)0.00320 (7)0.0439 (3)
H240.275 (2)1.0192 (7)−0.0377 (7)0.052 (4)*
U11U22U33U12U13U23
N10.0517 (7)0.0549 (8)0.0644 (8)0.0045 (6)0.0091 (6)−0.0115 (6)
N20.0471 (7)0.0512 (7)0.0468 (6)0.0063 (5)0.0095 (5)0.0009 (5)
N30.0557 (7)0.0448 (6)0.0486 (7)0.0072 (5)0.0073 (6)−0.0015 (5)
C10.0454 (9)0.0607 (9)0.0581 (9)0.0038 (7)0.0118 (7)−0.0031 (7)
C20.0441 (8)0.0453 (8)0.0494 (8)−0.0044 (6)0.0065 (6)0.0033 (6)
C30.0428 (7)0.0382 (7)0.0340 (6)0.0018 (5)0.0002 (5)0.0060 (5)
C40.0428 (8)0.0420 (7)0.0441 (7)−0.0017 (6)0.0049 (6)0.0013 (6)
C50.0499 (9)0.0437 (8)0.0587 (9)−0.0027 (6)0.0034 (7)−0.0047 (7)
C60.0413 (8)0.0560 (9)0.0477 (8)0.0050 (6)0.0107 (6)0.0079 (7)
C70.0410 (8)0.0444 (8)0.0479 (8)−0.0026 (6)0.0052 (6)0.0071 (6)
C80.0396 (7)0.0377 (7)0.0371 (7)0.0021 (5)0.0012 (5)0.0065 (5)
C90.0384 (7)0.0425 (7)0.0431 (7)−0.0015 (6)0.0076 (6)0.0014 (6)
C100.0451 (8)0.0422 (8)0.0473 (8)−0.0008 (6)0.0060 (6)−0.0024 (6)
C110.0467 (8)0.0480 (8)0.0518 (8)0.0099 (6)0.0080 (7)0.0049 (6)
C120.0437 (8)0.0490 (8)0.0417 (8)0.0016 (6)−0.0003 (6)0.0050 (6)
C130.0437 (7)0.0339 (6)0.0377 (7)−0.0030 (5)0.0060 (6)0.0042 (5)
C140.0411 (8)0.0376 (7)0.0450 (7)0.0022 (6)0.0027 (6)−0.0003 (6)
C150.0531 (9)0.0423 (7)0.0445 (8)0.0033 (6)−0.0009 (6)−0.0040 (6)
C160.0497 (8)0.0359 (7)0.0379 (7)−0.0048 (6)0.0029 (6)0.0035 (5)
C170.0504 (8)0.0361 (7)0.0340 (7)−0.0020 (6)0.0027 (6)0.0031 (5)
C180.0553 (9)0.0364 (7)0.0370 (7)−0.0019 (6)0.0026 (6)0.0023 (6)
C190.0517 (8)0.0369 (7)0.0394 (7)−0.0006 (6)0.0011 (6)0.0013 (6)
C200.0476 (8)0.0364 (7)0.0391 (7)−0.0025 (6)0.0022 (6)0.0018 (5)
C210.0463 (8)0.0356 (7)0.0431 (7)−0.0027 (6)0.0022 (6)0.0030 (6)
C220.0480 (8)0.0395 (7)0.0377 (7)−0.0033 (6)0.0028 (6)0.0017 (5)
C230.0503 (8)0.0351 (7)0.0394 (7)−0.0046 (6)0.0049 (6)0.0004 (5)
C240.0541 (8)0.0363 (7)0.0415 (7)−0.0046 (6)0.0073 (7)0.0006 (6)
N1—C11.3355 (18)C11—H110.975 (14)
N1—C51.3436 (18)C12—C131.3931 (18)
N2—C61.3394 (17)C12—H120.964 (14)
N2—C101.3396 (16)C13—C141.3952 (17)
N3—C111.3354 (17)C13—C221.4663 (17)
N3—C151.3422 (17)C14—C151.3765 (18)
C1—C21.380 (2)C14—H140.971 (13)
C1—H10.999 (15)C15—H150.989 (13)
C2—C31.3910 (18)C16—C171.3394 (18)
C2—H20.964 (13)C16—H160.969 (12)
C3—C41.3999 (18)C17—C181.4395 (18)
C3—C161.4627 (18)C17—H170.973 (13)
C4—C51.3796 (19)C18—C191.3408 (19)
C4—H40.970 (13)C18—H180.982 (13)
C5—H50.980 (14)C19—C201.4382 (18)
C6—C71.3830 (19)C19—H190.976 (13)
C6—H60.997 (14)C20—C211.3390 (18)
C7—C81.3974 (18)C20—H200.954 (13)
C7—H70.969 (13)C21—H210.973 (13)
C8—C91.3961 (17)C22—C231.3380 (18)
C8—C211.4616 (17)C22—H220.985 (13)
C9—C101.3788 (18)C23—C241.4436 (18)
C9—H90.969 (12)C23—H230.978 (12)
C10—H100.964 (13)C24—C24i1.341 (3)
C11—C121.3815 (18)C24—H240.997 (13)
C1—N1—C5115.69 (12)C13—C12—H12119.3 (8)
C6—N2—C10115.81 (12)C12—C13—C14116.18 (12)
C11—N3—C15115.75 (12)C12—C13—C22119.88 (11)
N1—C1—C2124.04 (14)C14—C13—C22123.85 (12)
N1—C1—H1116.0 (8)C15—C14—C13119.46 (12)
C2—C1—H1120.0 (8)C15—C14—H14118.7 (7)
C1—C2—C3120.14 (13)C13—C14—H14121.9 (7)
C1—C2—H2120.4 (8)N3—C15—C14124.58 (13)
C3—C2—H2119.5 (8)N3—C15—H15115.0 (8)
C2—C3—C4116.35 (12)C14—C15—H15120.4 (8)
C2—C3—C16120.18 (12)C17—C16—C3126.49 (12)
C4—C3—C16123.45 (12)C17—C16—H16118.4 (7)
C5—C4—C3119.21 (13)C3—C16—H16115.1 (7)
C5—C4—H4119.6 (7)C16—C17—C18124.57 (13)
C3—C4—H4121.2 (7)C16—C17—H17119.5 (7)
N1—C5—C4124.55 (13)C18—C17—H17115.9 (7)
N1—C5—H5116.1 (8)C19—C18—C17124.39 (13)
C4—C5—H5119.3 (8)C19—C18—H18118.2 (7)
N2—C6—C7123.92 (13)C17—C18—H18117.4 (7)
N2—C6—H6116.0 (8)C18—C19—C20125.63 (13)
C7—C6—H6120.1 (8)C18—C19—H19118.8 (7)
C6—C7—C8119.99 (13)C20—C19—H19115.5 (8)
C6—C7—H7120.5 (8)C21—C20—C19123.54 (13)
C8—C7—H7119.5 (8)C21—C20—H20119.9 (7)
C9—C8—C7116.10 (12)C19—C20—H20116.5 (7)
C9—C8—C21123.76 (12)C20—C21—C8127.09 (12)
C7—C8—C21120.12 (12)C20—C21—H21118.8 (7)
C10—C9—C8119.73 (12)C8—C21—H21114.1 (8)
C10—C9—H9119.7 (7)C23—C22—C13126.71 (12)
C8—C9—H9120.5 (7)C23—C22—H22117.8 (7)
N2—C10—C9124.44 (13)C13—C22—H22115.3 (7)
N2—C10—H10115.9 (7)C22—C23—C24124.00 (13)
C9—C10—H10119.6 (7)C22—C23—H23119.9 (7)
N3—C11—C12123.79 (13)C24—C23—H23116.1 (7)
N3—C11—H11116.4 (8)C24i—C24—C23124.67 (17)
C12—C11—H11119.8 (8)C24i—C24—H24119.5 (8)
C11—C12—C13120.21 (13)C23—C24—H24115.8 (8)
C11—C12—H12120.5 (8)
C5—N1—C1—C2−0.5 (2)C11—C12—C13—C22−174.59 (11)
N1—C1—C2—C3−0.7 (2)C12—C13—C14—C15−1.72 (18)
C1—C2—C3—C41.43 (18)C22—C13—C14—C15174.85 (12)
C1—C2—C3—C16−176.92 (12)C11—N3—C15—C141.1 (2)
C2—C3—C4—C5−1.03 (18)C13—C14—C15—N30.1 (2)
C16—C3—C4—C5177.26 (11)C2—C3—C16—C17175.93 (12)
C1—N1—C5—C40.9 (2)C4—C3—C16—C17−2.3 (2)
C3—C4—C5—N1−0.1 (2)C3—C16—C17—C18−177.16 (11)
C10—N2—C6—C70.60 (19)C16—C17—C18—C19−179.16 (12)
N2—C6—C7—C8−0.2 (2)C17—C18—C19—C20177.79 (11)
C6—C7—C8—C9−0.64 (17)C18—C19—C20—C21−176.06 (13)
C6—C7—C8—C21177.48 (11)C19—C20—C21—C8175.54 (11)
C7—C8—C9—C101.12 (17)C9—C8—C21—C20−1.5 (2)
C21—C8—C9—C10−176.93 (11)C7—C8—C21—C20−179.51 (12)
C6—N2—C10—C9−0.08 (19)C12—C13—C22—C23175.18 (13)
C8—C9—C10—N2−0.8 (2)C14—C13—C22—C23−1.3 (2)
C15—N3—C11—C12−0.6 (2)C13—C22—C23—C24−173.53 (11)
N3—C11—C12—C13−1.0 (2)C22—C23—C24—C24i177.66 (15)
C11—C12—C13—C142.12 (18)
  3 in total

1.  Supramolecular construction of molecular ladders in the solid state.

Authors:  Xiuchun Gao; Tomislav Friscić; Leonard R MacGillivray
Journal:  Angew Chem Int Ed Engl       Date:  2004-01       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  1,4-Bis(4-nitro-styr-yl)benzene.

Authors:  Phuong-Truc T Pham
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-11
  3 in total
  1 in total

1.  (1E,3E,5E,7E)-4,4'-(Octa-1,3,5,7-tetra-ene-1,8-di-yl)dipyridine.

Authors:  Muhammad Nadeem Arshad; Mamoun M Bader; Phuong-Truc T Pham; K Travis Holman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-03
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.