Literature DB >> 21580283

(1E,3E,5E,7E)-4,4'-(Octa-1,3,5,7-tetra-ene-1,8-di-yl)dipyridine.

Muhammad Nadeem Arshad, Mamoun M Bader, Phuong-Truc T Pham, K Travis Holman.   

Abstract

The title compound, C(18)H(16)N(2), crystallizes with one and a half independent mol-ecules in the asymmetric unit, with the half-mol-ecule being completed by crystallographic inversion symmetry. Both independent mol-ecules are almost planar, with the non-H atoms exhibiting r.m.s. deviations from the least-squares mol-ecular plane of 0.175 and 0.118 Å, respectively.

Entities:  

Year:  2010        PMID: 21580283      PMCID: PMC2983498          DOI: 10.1107/S160053681000317X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Woitellier et al. (1989 ▶). For the use of the diene and the triene in the synthesis of ladderanes via template-directed photochemistry, see: Gao et al. (2004 ▶). For a related structure, see: Bader (2009 ▶).

Experimental

Crystal data

C18H16N2 M = 260.33 Monoclinic, a = 5.5565 (12) Å b = 17.950 (4) Å c = 21.542 (5) Å β = 94.809 (5)° V = 2141.0 (8) Å3 Z = 6 Mo Kα radiation μ = 0.07 mm−1 T = 173 K 0.50 × 0.23 × 0.20 mm

Data collection

Siemens SMART 1K diffractometer Absorption correction: multi-scan (SADABS; Bruker 2001 ▶) T min = 0.979, T max = 0.986 13659 measured reflections 4727 independent reflections 2195 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.102 S = 0.87 4727 reflections 343 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶), PLATON (Spek, 2009 ▶) and X-SEED (Barbour, 2001 ▶)’; software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681000317X/ng2706sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681000317X/ng2706Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H16N2F(000) = 828
Mr = 260.33Dx = 1.211 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1908 reflections
a = 5.5565 (12) Åθ = 2.3–24.0°
b = 17.950 (4) ŵ = 0.07 mm1
c = 21.542 (5) ÅT = 173 K
β = 94.809 (5)°Needle, brown
V = 2141.0 (8) Å30.50 × 0.23 × 0.20 mm
Z = 6
Siemens SMART 1K diffractometer2195 reflections with I > 2σ(I)
ω scansRint = 0.061
Absorption correction: multi-scan (SADABS; Bruker 2001)θmax = 27.2°, θmin = 1.9°
Tmin = 0.979, Tmax = 0.986h = −5→7
13659 measured reflectionsk = −20→23
4727 independent reflectionsl = −27→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 0.87w = 1/[σ2(Fo2) + (0.0357P)2] where P = (Fo2 + 2Fc2)/3
4727 reflections(Δ/σ)max < 0.001
343 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.3021 (3)0.65494 (9)0.12504 (7)0.0448 (4)
N21.1856 (3)0.05066 (10)0.59878 (8)0.0536 (5)
N30.7464 (3)0.29359 (9)0.24722 (7)0.0469 (4)
C1−0.4416 (4)0.59659 (12)0.13700 (9)0.0436 (5)
C2−0.3757 (3)0.54235 (11)0.18034 (9)0.0384 (5)
C3−0.1522 (3)0.54509 (10)0.21419 (8)0.0343 (5)
C4−0.0079 (3)0.60627 (11)0.20284 (8)0.0376 (5)
C5−0.0885 (4)0.65812 (12)0.15892 (9)0.0433 (5)
C6−0.0763 (4)0.48508 (11)0.25731 (9)0.0385 (5)
C70.1333 (4)0.47926 (11)0.29196 (8)0.0385 (5)
C80.2023 (4)0.41530 (11)0.32953 (8)0.0381 (5)
C90.4162 (4)0.40603 (11)0.36246 (8)0.0389 (5)
C100.4835 (4)0.33966 (11)0.39705 (8)0.0379 (5)
C110.6999 (4)0.32671 (11)0.42754 (8)0.0386 (5)
C120.7613 (4)0.25807 (11)0.45946 (8)0.0375 (5)
C130.9763 (4)0.24363 (11)0.48963 (8)0.0383 (5)
C141.0455 (3)0.17596 (10)0.52440 (8)0.0346 (5)
C150.8974 (4)0.11369 (11)0.52742 (9)0.0418 (5)
C160.9740 (4)0.05425 (12)0.56460 (10)0.0480 (6)
C171.3282 (4)0.11009 (13)0.59511 (10)0.0526 (6)
C181.2671 (3)0.17204 (12)0.55905 (9)0.0436 (5)
C190.5479 (4)0.25131 (12)0.24915 (9)0.0444 (5)
C200.4693 (3)0.20009 (11)0.20450 (9)0.0391 (5)
C210.5991 (3)0.18927 (10)0.15268 (8)0.0346 (5)
C220.8084 (3)0.23195 (11)0.15099 (9)0.0415 (5)
C230.8709 (4)0.28191 (12)0.19777 (10)0.0459 (5)
C240.5221 (3)0.14039 (11)0.10062 (9)0.0388 (5)
C250.3179 (4)0.10021 (10)0.09310 (9)0.0388 (5)
C260.2444 (4)0.05851 (11)0.03763 (9)0.0409 (5)
C270.0375 (4)0.01998 (10)0.02796 (8)0.0410 (5)
H1−0.601 (3)0.5947 (10)0.1124 (7)0.049*
H2−0.481 (3)0.5029 (10)0.1877 (8)0.049*
H40.151 (3)0.6145 (9)0.2237 (7)0.049*
H50.016 (3)0.6982 (10)0.1492 (7)0.049*
H6−0.194 (3)0.4458 (10)0.2585 (8)0.049*
H70.258 (3)0.5183 (10)0.2906 (7)0.049*
H80.077 (3)0.3763 (10)0.3290 (7)0.049*
H90.539 (3)0.4467 (10)0.3614 (7)0.049*
H100.361 (3)0.3004 (10)0.3966 (7)0.049*
H110.826 (3)0.3624 (10)0.4272 (8)0.049*
H120.633 (3)0.2204 (10)0.4577 (7)0.049*
H131.103 (3)0.2809 (10)0.4894 (7)0.049*
H150.739 (3)0.1129 (10)0.5057 (8)0.049*
H160.864 (3)0.0118 (10)0.5671 (8)0.049*
H171.483 (3)0.1070 (10)0.6207 (8)0.049*
H181.381 (3)0.2120 (10)0.5576 (7)0.049*
H190.457 (3)0.2596 (9)0.2858 (7)0.049*
H200.319 (3)0.1734 (10)0.2092 (7)0.049*
H220.903 (3)0.2249 (9)0.1158 (7)0.049*
H231.019 (3)0.3124 (10)0.1963 (7)0.049*
H240.628 (3)0.1390 (9)0.0662 (8)0.049*
H250.207 (3)0.1001 (9)0.1263 (7)0.049*
H260.355 (3)0.0600 (9)0.0042 (8)0.049*
H27−0.071 (3)0.0190 (9)0.0619 (7)0.049*
U11U22U33U12U13U23
N10.0449 (11)0.0430 (12)0.0459 (10)0.0082 (9)0.0007 (9)0.0022 (8)
N20.0463 (11)0.0473 (12)0.0672 (13)0.0057 (9)0.0044 (10)0.0136 (9)
N30.0500 (11)0.0411 (11)0.0501 (11)−0.0068 (9)0.0065 (9)−0.0035 (8)
C10.0402 (13)0.0470 (15)0.0424 (13)0.0078 (11)−0.0024 (10)−0.0058 (11)
C20.0378 (12)0.0369 (13)0.0405 (12)−0.0004 (9)0.0029 (10)−0.0054 (10)
C30.0378 (11)0.0324 (12)0.0330 (11)0.0023 (9)0.0049 (9)−0.0040 (9)
C40.0335 (11)0.0393 (13)0.0400 (12)−0.0003 (10)0.0028 (9)0.0024 (10)
C50.0424 (13)0.0398 (14)0.0480 (13)0.0016 (10)0.0059 (11)0.0071 (11)
C60.0437 (13)0.0315 (13)0.0401 (12)−0.0002 (9)0.0029 (10)−0.0028 (9)
C70.0488 (13)0.0311 (13)0.0358 (12)−0.0022 (9)0.0034 (10)0.0012 (9)
C80.0476 (13)0.0310 (12)0.0357 (11)0.0008 (9)0.0040 (10)0.0001 (9)
C90.0520 (13)0.0308 (13)0.0336 (11)−0.0021 (10)0.0022 (10)−0.0011 (9)
C100.0508 (14)0.0306 (13)0.0321 (11)−0.0005 (9)0.0025 (10)−0.0023 (9)
C110.0504 (14)0.0326 (13)0.0330 (11)−0.0035 (10)0.0033 (10)−0.0007 (9)
C120.0480 (13)0.0311 (13)0.0335 (11)0.0002 (9)0.0033 (10)−0.0022 (9)
C130.0449 (13)0.0324 (13)0.0373 (11)−0.0021 (9)0.0023 (10)−0.0011 (9)
C140.0358 (11)0.0353 (12)0.0333 (11)0.0026 (9)0.0061 (9)−0.0032 (9)
C150.0415 (12)0.0382 (13)0.0454 (13)−0.0001 (10)0.0022 (10)0.0002 (10)
C160.0471 (14)0.0398 (14)0.0572 (14)−0.0024 (11)0.0062 (11)0.0082 (11)
C170.0419 (14)0.0562 (17)0.0590 (15)0.0076 (12)0.0009 (11)0.0135 (12)
C180.0401 (13)0.0400 (14)0.0505 (13)−0.0019 (10)0.0030 (11)0.0037 (11)
C190.0505 (14)0.0421 (14)0.0416 (13)−0.0030 (11)0.0100 (10)−0.0022 (10)
C200.0375 (12)0.0356 (13)0.0444 (12)−0.0053 (9)0.0050 (10)0.0029 (10)
C210.0400 (11)0.0290 (12)0.0345 (11)0.0022 (9)0.0022 (9)0.0049 (9)
C220.0436 (13)0.0411 (14)0.0408 (12)−0.0033 (10)0.0082 (10)0.0017 (10)
C230.0424 (13)0.0440 (14)0.0514 (14)−0.0091 (10)0.0039 (11)0.0035 (11)
C240.0457 (13)0.0344 (12)0.0372 (12)0.0035 (10)0.0090 (10)0.0019 (9)
C250.0463 (13)0.0298 (12)0.0407 (13)0.0033 (10)0.0053 (10)0.0005 (10)
C260.0510 (14)0.0332 (13)0.0386 (13)0.0036 (10)0.0045 (10)0.0014 (10)
C270.0510 (14)0.0309 (12)0.0409 (13)0.0030 (10)0.0031 (10)0.0015 (9)
N1—C11.341 (2)C12—H120.982 (17)
N1—C51.341 (2)C13—C141.462 (2)
N2—C171.335 (2)C13—H130.972 (17)
N2—C161.335 (2)C14—C181.387 (2)
N3—C231.334 (2)C14—C151.393 (2)
N3—C191.342 (2)C15—C161.380 (3)
C1—C21.377 (3)C15—H150.962 (16)
C1—H10.996 (16)C16—H160.981 (17)
C2—C31.387 (2)C17—C181.382 (3)
C2—H20.942 (17)C17—H170.984 (16)
C3—C41.394 (2)C18—H180.960 (17)
C3—C61.461 (3)C19—C201.375 (3)
C4—C51.375 (2)C19—H190.983 (16)
C4—H40.968 (16)C20—C211.392 (2)
C5—H50.960 (17)C20—H200.974 (17)
C6—C71.334 (2)C21—C221.396 (2)
C6—H60.964 (17)C21—C241.460 (2)
C7—C81.438 (2)C22—C231.372 (3)
C7—H70.986 (17)C22—H220.966 (16)
C8—C91.343 (2)C23—H230.990 (17)
C8—H80.987 (17)C24—C251.343 (2)
C9—C101.438 (3)C24—H240.985 (16)
C9—H91.000 (17)C25—C261.440 (2)
C10—C111.341 (2)C25—H250.983 (16)
C10—H100.981 (17)C26—C271.343 (2)
C11—C121.438 (2)C26—H260.986 (16)
C11—H110.951 (17)C27—C27i1.434 (4)
C12—C131.337 (2)C27—H270.985 (16)
C1—N1—C5115.34 (17)C18—C14—C15115.83 (19)
C17—N2—C16115.36 (19)C18—C14—C13120.08 (18)
C23—N3—C19114.71 (18)C15—C14—C13124.05 (17)
N1—C1—C2123.89 (19)C16—C15—C14119.54 (19)
N1—C1—H1115.4 (10)C16—C15—H15119.8 (11)
C2—C1—H1120.7 (10)C14—C15—H15120.6 (11)
C1—C2—C3120.4 (2)N2—C16—C15124.9 (2)
C1—C2—H2120.7 (11)N2—C16—H16117.1 (10)
C3—C2—H2118.8 (11)C15—C16—H16118.0 (10)
C2—C3—C4116.02 (18)N2—C17—C18123.9 (2)
C2—C3—C6120.39 (18)N2—C17—H17114.7 (11)
C4—C3—C6123.57 (17)C18—C17—H17121.5 (11)
C5—C4—C3119.67 (18)C17—C18—C14120.5 (2)
C5—C4—H4116.6 (10)C17—C18—H18119.2 (10)
C3—C4—H4123.7 (10)C14—C18—H18120.3 (10)
N1—C5—C4124.6 (2)N3—C19—C20124.76 (19)
N1—C5—H5116.0 (10)N3—C19—H19114.6 (10)
C4—C5—H5119.2 (10)C20—C19—H19120.6 (10)
C7—C6—C3127.26 (19)C19—C20—C21119.91 (18)
C7—C6—H6119.5 (10)C19—C20—H20118.8 (10)
C3—C6—H6113.3 (10)C21—C20—H20121.3 (10)
C6—C7—C8123.8 (2)C20—C21—C22115.66 (18)
C6—C7—H7120.6 (10)C20—C21—C24124.18 (18)
C8—C7—H7115.5 (10)C22—C21—C24120.07 (17)
C9—C8—C7125.36 (19)C23—C22—C21119.98 (19)
C9—C8—H8120.8 (10)C23—C22—H22122.8 (10)
C7—C8—H8113.8 (10)C21—C22—H22117.2 (10)
C8—C9—C10123.8 (2)N3—C23—C22124.97 (19)
C8—C9—H9118.2 (10)N3—C23—H23115.3 (10)
C10—C9—H9117.9 (10)C22—C23—H23119.8 (10)
C11—C10—C9125.5 (2)C25—C24—C21127.29 (18)
C11—C10—H10118.3 (10)C25—C24—H24116.6 (10)
C9—C10—H10116.1 (10)C21—C24—H24116.0 (10)
C10—C11—C12123.34 (19)C24—C25—C26123.86 (19)
C10—C11—H11120.8 (11)C24—C25—H25119.3 (10)
C12—C11—H11115.8 (11)C26—C25—H25116.8 (10)
C13—C12—C11124.4 (2)C27—C26—C25125.16 (19)
C13—C12—H12120.2 (10)C27—C26—H26118.6 (10)
C11—C12—H12115.4 (10)C25—C26—H26116.3 (10)
C12—C13—C14126.60 (19)C26—C27—C27i124.9 (3)
C12—C13—H13118.8 (10)C26—C27—H27117.6 (10)
C14—C13—H13114.6 (10)C27i—C27—H27117.5 (10)
C5—N1—C1—C2−0.4 (3)C13—C14—C15—C16−176.12 (18)
N1—C1—C2—C3−1.0 (3)C17—N2—C16—C15−0.3 (3)
C1—C2—C3—C42.1 (3)C14—C15—C16—N2−0.6 (3)
C1—C2—C3—C6−176.14 (17)C16—N2—C17—C180.1 (3)
C2—C3—C4—C5−1.7 (3)N2—C17—C18—C140.9 (3)
C6—C3—C4—C5176.43 (18)C15—C14—C18—C17−1.7 (3)
C1—N1—C5—C40.8 (3)C13—C14—C18—C17176.04 (18)
C3—C4—C5—N10.3 (3)C23—N3—C19—C20−1.0 (3)
C2—C3—C6—C7178.71 (19)N3—C19—C20—C210.1 (3)
C4—C3—C6—C70.7 (3)C19—C20—C21—C221.2 (3)
C3—C6—C7—C8−174.69 (18)C19—C20—C21—C24−175.40 (18)
C6—C7—C8—C9176.5 (2)C20—C21—C22—C23−1.6 (3)
C7—C8—C9—C10−176.75 (17)C24—C21—C22—C23175.19 (17)
C8—C9—C10—C11176.03 (19)C19—N3—C23—C220.6 (3)
C9—C10—C11—C12−177.47 (17)C21—C22—C23—N30.7 (3)
C10—C11—C12—C13179.32 (19)C20—C21—C24—C251.7 (3)
C11—C12—C13—C14177.90 (17)C22—C21—C24—C25−174.80 (18)
C12—C13—C14—C18−172.99 (19)C21—C24—C25—C26174.09 (18)
C12—C13—C14—C154.5 (3)C24—C25—C26—C27−177.56 (19)
C18—C14—C15—C161.5 (3)C25—C26—C27—C27i178.4 (2)
  4 in total

1.  Supramolecular construction of molecular ladders in the solid state.

Authors:  Xiuchun Gao; Tomislav Friscić; Leonard R MacGillivray
Journal:  Angew Chem Int Ed Engl       Date:  2004-01       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  4-[(1E,3E,5E)-6-(4-Pyrid-yl)hexa-1,3,5-trien-yl]pyridine.

Authors:  Mamoun M Bader
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-29

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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