| Literature DB >> 21583639 |
Anatolij Dudko1, Volodimir Bon, Alexandra Kozachkova, Vasily Pekhnyo.
Abstract
The title compound, NH(4) (+)·C(5)H(14)NO(6)P(2) (-), was obtained from 1-ammonio-1-phosphono-pentane-1-phospho-nic acid and ammonium hydroxide in aqueous solution. The asymmetric unit of title compound contains one molecule, which consists of an ammonium cation and an aminodiphosphonic anion with the H atoms transferred from the phosphonic acid group to the amino group. The crystal structure shows a three-dimensional network of O-H⋯O and N-H⋯O hydrogen bonds which stabilize the structure.Entities:
Year: 2009 PMID: 21583639 PMCID: PMC2977313 DOI: 10.1107/S1600536809028323
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| NH4+·C5H14NO6P2− | |
| Monoclinic, | Melting point: 495 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 824 reflections | |
| θ = 2.7–21.1° | |
| µ = 0.41 mm−1 | |
| β = 98.100 (3)° | |
| Needle, colourless | |
| 0.50 × 0.12 × 0.04 mm |
| Bruker APEXII CCD diffractometer | 2256 independent reflections |
| Radiation source: fine–focus sealed tube | 1532 reflections with |
| graphite | |
| Detector resolution: 8.26 pixels mm-1 | θmax = 26.4°, θmin = 2.0° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 5297 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2256 reflections | (Δ/σ)max < 0.001 |
| 173 parameters | Δρmax = 0.37 e Å−3 |
| 0 restraints | Δρmin = −0.38 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| P1 | 0.22481 (10) | 0.43513 (17) | 0.29915 (4) | 0.0195 (3) | |
| P2 | 0.00587 (9) | 0.47871 (16) | 0.39608 (4) | 0.0184 (2) | |
| C1 | 0.1590 (3) | 0.3149 (6) | 0.37310 (16) | 0.0161 (7) | |
| C2 | 0.2832 (4) | 0.3109 (7) | 0.43011 (17) | 0.0243 (8) | |
| H2A | 0.3635 | 0.2439 | 0.4129 | 0.029* | |
| H2B | 0.3070 | 0.4715 | 0.4421 | 0.029* | |
| C3 | 0.2649 (4) | 0.1806 (7) | 0.49344 (17) | 0.0295 (9) | |
| H3A | 0.1787 | 0.2316 | 0.5088 | 0.035* | |
| H3B | 0.2567 | 0.0146 | 0.4841 | 0.035* | |
| C4 | 0.3877 (4) | 0.2227 (8) | 0.54735 (18) | 0.0374 (11) | |
| H4A | 0.3885 | 0.3860 | 0.5602 | 0.045* | |
| H4B | 0.4745 | 0.1909 | 0.5297 | 0.045* | |
| C5 | 0.3827 (5) | 0.0731 (9) | 0.6084 (2) | 0.0506 (13) | |
| H5A | 0.2985 | 0.1074 | 0.6271 | 0.076* | |
| H5B | 0.4634 | 0.1059 | 0.6407 | 0.076* | |
| H5C | 0.3831 | −0.0889 | 0.5962 | 0.076* | |
| N1 | 0.1106 (3) | 0.0689 (5) | 0.35619 (16) | 0.0200 (7) | |
| N2 | 0.3682 (4) | 0.9144 (7) | 0.2109 (2) | 0.0297 (8) | |
| O1 | 0.3514 (2) | 0.2924 (4) | 0.28929 (11) | 0.0247 (6) | |
| O2 | 0.2493 (3) | 0.6898 (4) | 0.31012 (12) | 0.0279 (6) | |
| O3 | 0.1056 (3) | 0.3928 (5) | 0.23993 (12) | 0.0282 (7) | |
| O4 | −0.0725 (3) | 0.2932 (4) | 0.43385 (13) | 0.0263 (6) | |
| O5 | −0.0902 (2) | 0.5374 (5) | 0.33383 (12) | 0.0280 (6) | |
| O6 | 0.0601 (3) | 0.6800 (4) | 0.43945 (11) | 0.0237 (6) | |
| H3O | 0.107 (5) | 0.279 (9) | 0.217 (2) | 0.065 (18)* | |
| H4O | −0.061 (5) | 0.303 (9) | 0.475 (2) | 0.070 (18)* | |
| H11N | 0.180 (4) | −0.059 (7) | 0.3428 (19) | 0.047 (12)* | |
| H12N | 0.078 (5) | −0.001 (8) | 0.392 (2) | 0.060 (14)* | |
| H13N | 0.038 (4) | 0.063 (7) | 0.321 (2) | 0.040 (12)* | |
| H21N | 0.336 (5) | 0.810 (9) | 0.247 (3) | 0.083 (18)* | |
| H22N | 0.449 (5) | 0.874 (7) | 0.2012 (19) | 0.040 (13)* | |
| H23N | 0.295 (6) | 0.919 (10) | 0.176 (3) | 0.10 (2)* | |
| H24N | 0.377 (5) | 1.058 (8) | 0.231 (2) | 0.048 (14)* |
| P1 | 0.0216 (5) | 0.0158 (5) | 0.0220 (5) | −0.0005 (4) | 0.0066 (4) | 0.0005 (4) |
| P2 | 0.0181 (5) | 0.0165 (5) | 0.0213 (5) | 0.0008 (4) | 0.0054 (4) | 0.0007 (4) |
| C1 | 0.0180 (17) | 0.0085 (18) | 0.0212 (17) | −0.0008 (15) | 0.0006 (14) | 0.0005 (13) |
| C2 | 0.0189 (18) | 0.026 (2) | 0.0263 (19) | −0.0043 (17) | −0.0025 (15) | −0.0006 (16) |
| C3 | 0.028 (2) | 0.034 (3) | 0.0250 (19) | −0.002 (2) | 0.0005 (17) | 0.0037 (17) |
| C4 | 0.037 (2) | 0.043 (3) | 0.029 (2) | 0.004 (2) | −0.0054 (19) | 0.0001 (19) |
| C5 | 0.052 (3) | 0.068 (4) | 0.030 (2) | 0.011 (3) | 0.000 (2) | 0.007 (2) |
| N1 | 0.0237 (16) | 0.0152 (17) | 0.0211 (16) | −0.0026 (14) | 0.0028 (14) | −0.0007 (13) |
| N2 | 0.026 (2) | 0.026 (2) | 0.040 (2) | 0.0035 (18) | 0.0115 (18) | 0.0002 (17) |
| O1 | 0.0194 (13) | 0.0244 (15) | 0.0314 (13) | 0.0026 (12) | 0.0074 (11) | −0.0023 (11) |
| O2 | 0.0360 (15) | 0.0154 (15) | 0.0347 (14) | −0.0015 (13) | 0.0132 (12) | −0.0007 (11) |
| O3 | 0.0297 (15) | 0.0329 (18) | 0.0216 (13) | 0.0049 (14) | 0.0019 (12) | −0.0045 (13) |
| O4 | 0.0315 (15) | 0.0229 (16) | 0.0265 (15) | −0.0089 (12) | 0.0108 (12) | −0.0013 (12) |
| O5 | 0.0198 (12) | 0.0329 (17) | 0.0305 (14) | 0.0030 (12) | 0.0002 (11) | 0.0063 (12) |
| O6 | 0.0317 (14) | 0.0131 (14) | 0.0278 (13) | −0.0043 (12) | 0.0097 (11) | −0.0040 (10) |
| P1—O2 | 1.488 (3) | C4—C5 | 1.514 (5) |
| P1—O1 | 1.501 (2) | C4—H4A | 0.9700 |
| P1—O3 | 1.559 (3) | C4—H4B | 0.9700 |
| P1—C1 | 1.844 (3) | C5—H5A | 0.9600 |
| P2—O5 | 1.495 (2) | C5—H5B | 0.9600 |
| P2—O6 | 1.499 (2) | C5—H5C | 0.9600 |
| P2—O4 | 1.564 (3) | N1—H11N | 1.05 (4) |
| P2—C1 | 1.858 (3) | N1—H12N | 0.93 (5) |
| C1—N1 | 1.507 (4) | N1—H13N | 0.93 (4) |
| C1—C2 | 1.541 (5) | N2—H21N | 1.02 (6) |
| C2—C3 | 1.519 (5) | N2—H22N | 0.86 (4) |
| C2—H2A | 0.9700 | N2—H23N | 0.93 (6) |
| C2—H2B | 0.9700 | N2—H24N | 0.92 (5) |
| C3—C4 | 1.511 (5) | O3—H3O | 0.80 (5) |
| C3—H3A | 0.9700 | O4—H4O | 0.82 (5) |
| C3—H3B | 0.9700 | ||
| O2—P1—O1 | 116.04 (14) | C2—C3—H3B | 109.4 |
| O2—P1—O3 | 110.56 (16) | H3A—C3—H3B | 108.0 |
| O1—P1—O3 | 109.44 (15) | C3—C4—C5 | 113.1 (4) |
| O2—P1—C1 | 107.97 (15) | C3—C4—H4A | 109.0 |
| O1—P1—C1 | 106.42 (15) | C5—C4—H4A | 109.0 |
| O3—P1—C1 | 105.83 (15) | C3—C4—H4B | 109.0 |
| O5—P2—O6 | 116.53 (15) | C5—C4—H4B | 109.0 |
| O5—P2—O4 | 106.61 (15) | H4A—C4—H4B | 107.8 |
| O6—P2—O4 | 112.60 (14) | C4—C5—H5A | 109.5 |
| O5—P2—C1 | 108.42 (14) | C4—C5—H5B | 109.5 |
| O6—P2—C1 | 108.33 (14) | H5A—C5—H5B | 109.5 |
| O4—P2—C1 | 103.51 (14) | C4—C5—H5C | 109.5 |
| N1—C1—C2 | 109.8 (3) | H5A—C5—H5C | 109.5 |
| N1—C1—P1 | 107.0 (2) | H5B—C5—H5C | 109.5 |
| C2—C1—P1 | 107.5 (2) | C1—N1—H11N | 122 (2) |
| N1—C1—P2 | 107.4 (2) | C1—N1—H12N | 110 (3) |
| C2—C1—P2 | 112.0 (2) | H11N—N1—H12N | 101 (3) |
| P1—C1—P2 | 113.01 (17) | C1—N1—H13N | 113 (2) |
| C3—C2—C1 | 118.3 (3) | H11N—N1—H13N | 102 (3) |
| C3—C2—H2A | 107.7 | H12N—N1—H13N | 107 (4) |
| C1—C2—H2A | 107.7 | H21N—N2—H22N | 112 (4) |
| C3—C2—H2B | 107.7 | H21N—N2—H23N | 107 (4) |
| C1—C2—H2B | 107.7 | H22N—N2—H23N | 116 (4) |
| H2A—C2—H2B | 107.1 | H21N—N2—H24N | 103 (4) |
| C4—C3—C2 | 111.4 (3) | H22N—N2—H24N | 108 (4) |
| C4—C3—H3A | 109.4 | H23N—N2—H24N | 109 (4) |
| C2—C3—H3A | 109.4 | P1—O3—H3O | 120 (4) |
| C4—C3—H3B | 109.4 | P2—O4—H4O | 116 (4) |
| O2—P1—C1—N1 | 170.1 (2) | O5—P2—C1—C2 | 162.9 (2) |
| O1—P1—C1—N1 | −64.7 (2) | O6—P2—C1—C2 | 35.6 (3) |
| O3—P1—C1—N1 | 51.7 (3) | O4—P2—C1—C2 | −84.2 (3) |
| O2—P1—C1—C2 | −72.0 (3) | O5—P2—C1—P1 | 41.3 (2) |
| O1—P1—C1—C2 | 53.2 (3) | O6—P2—C1—P1 | −86.01 (19) |
| O3—P1—C1—C2 | 169.6 (2) | O4—P2—C1—P1 | 154.25 (17) |
| O2—P1—C1—P2 | 52.1 (2) | N1—C1—C2—C3 | −53.3 (4) |
| O1—P1—C1—P2 | 177.27 (16) | P1—C1—C2—C3 | −169.4 (3) |
| O3—P1—C1—P2 | −66.4 (2) | P2—C1—C2—C3 | 65.9 (4) |
| O5—P2—C1—N1 | −76.5 (2) | C1—C2—C3—C4 | −171.9 (3) |
| O6—P2—C1—N1 | 156.2 (2) | C2—C3—C4—C5 | −172.9 (3) |
| O4—P2—C1—N1 | 36.4 (2) |
| H··· | ||||
| N1—H11N···O2i | 1.05 (4) | 1.75 (4) | 2.777 (4) | 163 (3) |
| N1—H13N···O3ii | 0.93 (4) | 1.98 (4) | 2.828 (4) | 152 (3) |
| N1—H12N···O6i | 0.93 (5) | 2.08 (5) | 2.879 (4) | 143 (4) |
| O3—H3O···O5ii | 0.80 (5) | 1.72 (5) | 2.519 (4) | 174 (5) |
| O4—H4O···O6iii | 0.82 (5) | 1.75 (5) | 2.566 (3) | 173 (5) |
| N2—H22N···O1iv | 0.86 (4) | 1.95 (4) | 2.781 (4) | 161 (4) |
| N2—H21N···O2 | 1.02 (6) | 1.77 (6) | 2.769 (4) | 165 (4) |
| N2—H23N···O5v | 0.93 (6) | 2.07 (6) | 2.787 (5) | 134 (5) |
| N2—H24N···O1vi | 0.92 (5) | 1.83 (5) | 2.705 (5) | 159 (4) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H11 | 1.05 (4) | 1.75 (4) | 2.777 (4) | 163 (3) |
| N1—H13 | 0.93 (4) | 1.98 (4) | 2.828 (4) | 152 (3) |
| N1—H12 | 0.93 (5) | 2.08 (5) | 2.879 (4) | 143 (4) |
| O3—H3 | 0.80 (5) | 1.72 (5) | 2.519 (4) | 174 (5) |
| O4—H4 | 0.82 (5) | 1.75 (5) | 2.566 (3) | 173 (5) |
| N2—H22 | 0.86 (4) | 1.95 (4) | 2.781 (4) | 161 (4) |
| N2—H21 | 1.02 (6) | 1.77 (6) | 2.769 (4) | 165 (4) |
| N2—H23 | 0.93 (6) | 2.07 (6) | 2.787 (5) | 134 (5) |
| N2—H24 | 0.92 (5) | 1.83 (5) | 2.705 (5) | 159 (4) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .