Literature DB >> 21580161

Ammonium hydrogen (RS)-[(5-methyl-2-oxo-1,3-oxazolidin-3-yl)meth-yl]phospho-nate.

Petar Todorov, Emilia Naydenova, Rositsa P Nikolova, Boris L Shivachev.   

Abstract

In the title compound, NH(4) (+)·C(5)H(9)NO(5)P(-), the five-membered methyl-oxazolidin-2-one unit is disordered over two positions, the major component having a site occupancy of 0.832 (9). A three-dimensional network of O-H⋯O and N-H⋯O hydrogen bonds stabilizes the crystal structure.

Entities:  

Year:  2009        PMID: 21580161      PMCID: PMC2980211          DOI: 10.1107/S1600536809050338

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background of the use of phospho­nic and amino­phospho­nic acids as chelating agents in metal extraction and as medicinal compounds, see: Metlushka et al. (2009 ▶); Naydenova et al. (2009 ▶); Matczak-Jon & Videnova-Adrabinska (2005 ▶). For related structures, see: Dudko et al. (200 ▶9); Shivachev et al. (2005 ▶); Todorov et al. (2006 ▶); Ying et al. (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

NH4C5H9NO5P M = 212.14 Triclinic, a = 6.471 (3) Å b = 8.801 (3) Å c = 9.427 (4) Å α = 70.76 (2)° β = 70.658 (18)° γ = 89.363 (16)° V = 475.4 (3) Å3 Z = 2 Mo Kα radiation μ = 0.29 mm−1 T = 290 K 0.30 × 0.28 × 0.21 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 3673 measured reflections 1855 independent reflections 1606 reflections with I > 2σ(I) R int = 0.027 3 standard reflections frequency: 120 min intensity decay: −1%

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.097 S = 1.05 1855 reflections 159 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.33 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809050338/is2491sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809050338/is2491Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
NH4+·C5H9NO5PZ = 2
Mr = 212.14F(000) = 224
Triclinic, P1Dx = 1.482 Mg m3
Hall symbol: -P 1Melting point: not measured K
a = 6.471 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.801 (3) ÅCell parameters from 22 reflections
c = 9.427 (4) Åθ = 18.2–19.9°
α = 70.76 (2)°µ = 0.28 mm1
β = 70.658 (18)°T = 290 K
γ = 89.363 (16)°Prismatic, pale yellow
V = 475.4 (3) Å30.30 × 0.28 × 0.21 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.027
Radiation source: fine-focus sealed tubeθmax = 26.0°, θmin = 2.4°
graphiteh = −7→7
ω/2θ scansk = −10→10
3673 measured reflectionsl = −11→11
1855 independent reflections3 standard reflections every 120 min
1606 reflections with I > 2σ(I) intensity decay: −1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0517P)2 + 0.1432P] where P = (Fo2 + 2Fc2)/3
1855 reflections(Δ/σ)max = 0.001
159 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
P10.41857 (7)0.24449 (5)0.45738 (5)0.02797 (16)
O30.5389 (2)0.15751 (15)0.56719 (15)0.0337 (3)
O10.2459 (2)0.34533 (16)0.51681 (16)0.0398 (3)
O40.6905 (3)0.3598 (2)−0.03575 (18)0.0551 (4)
O20.3153 (2)0.12049 (16)0.40620 (19)0.0451 (4)
H1A0.39570.01290.41920.054*
N10.7900 (3)0.3121 (2)0.18552 (19)0.0384 (4)
C40.8154 (3)0.3152 (3)0.0385 (2)0.0409 (5)
C10.6134 (3)0.3843 (2)0.2730 (2)0.0344 (4)
H1B0.53310.43840.20350.041*
H1C0.67780.46640.29850.041*
N20.2060 (2)0.66240 (18)0.34358 (18)0.0328 (4)
HN20.07040.67900.38370.045 (6)*
HN10.22220.56700.39720.052 (7)*
HN30.30090.73180.34850.056 (7)*
HN40.25410.67120.23220.054 (7)*
C20.9747 (8)0.2620 (6)0.2347 (6)0.0391 (10)0.832 (9)
H2A0.93230.16670.33090.047*0.832 (9)
H2B1.04330.34800.25270.047*0.832 (9)
O51.0145 (8)0.2687 (6)−0.0269 (6)0.0502 (9)0.832 (9)
C51.1711 (12)0.0514 (6)0.1183 (8)0.094 (2)0.832 (9)
H5A1.26410.04000.02000.141*0.832 (9)
H5B1.0342−0.01590.15780.141*0.832 (9)
H5C1.24320.01910.19610.141*0.832 (9)
C31.1272 (5)0.2245 (4)0.0887 (3)0.0421 (10)0.832 (9)
H31.26770.29320.04430.050*0.832 (9)
C220.988 (5)0.221 (3)0.217 (3)0.039 (5)0.168 (9)
H22A1.11190.29840.19180.047*0.168 (9)
H22B0.94590.15360.32920.047*0.168 (9)
O250.957 (3)0.209 (3)−0.005 (3)0.043 (4)0.168 (9)
C251.273 (4)0.128 (3)0.054 (3)0.070 (7)0.168 (9)
H25A1.30780.0833−0.03050.105*0.168 (9)
H25B1.32860.06480.13520.105*0.168 (9)
H25C1.34040.23760.01120.105*0.168 (9)
C231.047 (3)0.125 (2)0.1196 (16)0.041 (5)0.168 (9)
H230.97580.01330.17810.049*0.168 (9)
U11U22U33U12U13U23
P10.0290 (3)0.0249 (2)0.0322 (3)0.00831 (17)−0.01321 (19)−0.01013 (19)
O30.0414 (7)0.0289 (6)0.0372 (7)0.0081 (5)−0.0215 (6)−0.0115 (6)
O10.0367 (7)0.0324 (7)0.0418 (8)0.0125 (6)−0.0063 (6)−0.0097 (6)
O40.0615 (10)0.0769 (11)0.0407 (8)0.0307 (9)−0.0294 (8)−0.0266 (8)
O20.0516 (8)0.0327 (7)0.0715 (10)0.0147 (6)−0.0440 (8)−0.0214 (7)
N10.0343 (8)0.0544 (10)0.0328 (8)0.0181 (8)−0.0147 (7)−0.0202 (8)
C40.0418 (11)0.0482 (12)0.0313 (10)0.0140 (9)−0.0122 (9)−0.0129 (9)
C10.0363 (10)0.0335 (9)0.0314 (9)0.0108 (8)−0.0100 (8)−0.0107 (8)
N20.0338 (9)0.0310 (8)0.0338 (8)0.0066 (6)−0.0128 (7)−0.0108 (7)
C20.0315 (15)0.054 (3)0.0355 (17)0.0178 (18)−0.0107 (12)−0.0209 (18)
O50.046 (2)0.065 (2)0.0321 (13)0.0220 (15)−0.0070 (15)−0.0147 (17)
C50.158 (7)0.063 (3)0.130 (5)0.064 (3)−0.111 (5)−0.059 (3)
C30.0309 (14)0.045 (2)0.0543 (17)0.0107 (13)−0.0152 (12)−0.0220 (14)
C220.059 (9)0.041 (11)0.044 (8)0.037 (8)−0.042 (7)−0.037 (8)
O250.034 (9)0.067 (12)0.035 (8)0.023 (7)−0.013 (7)−0.025 (9)
C250.066 (14)0.087 (18)0.104 (19)0.049 (11)−0.050 (13)−0.073 (16)
C230.045 (8)0.037 (9)0.043 (7)0.009 (7)−0.015 (6)−0.016 (6)
P1—O11.4969 (14)C2—C31.539 (5)
P1—O31.5041 (13)C2—H2A0.9700
P1—O21.5645 (14)C2—H2B0.9700
P1—C11.816 (2)O5—C31.454 (6)
O4—C41.218 (2)C5—C31.497 (6)
O2—H1A1.0666C5—H5A0.9600
N1—C41.332 (3)C5—H5B0.9600
N1—C21.435 (6)C5—H5C0.9600
N1—C11.447 (2)C3—H30.9800
N1—C221.56 (2)C22—C231.41 (2)
C4—O51.355 (5)C22—H22A0.9700
C4—O251.36 (2)C22—H22B0.9700
C1—H1B0.9700O25—C231.46 (3)
C1—H1C0.9700C25—C231.39 (3)
N2—HN20.8645C25—H25A0.9600
N2—HN10.8517C25—H25B0.9600
N2—HN30.8934C25—H25C0.9600
N2—HN40.9676C23—H230.9800
O1—P1—O3117.20 (8)H2A—C2—H2B109.3
O1—P1—O2109.29 (9)C4—O5—C3109.8 (4)
O3—P1—O2109.68 (8)C3—C5—H5A109.5
O1—P1—C1104.86 (8)C3—C5—H5B109.5
O3—P1—C1109.63 (9)H5A—C5—H5B109.5
O2—P1—C1105.49 (10)C3—C5—H5C109.4
P1—O2—H1A112.0H5A—C5—H5C109.5
C4—N1—C2114.0 (2)H5B—C5—H5C109.5
C4—N1—C1122.16 (16)O5—C3—C5108.1 (3)
C2—N1—C1122.7 (2)O5—C3—C2104.9 (3)
C4—N1—C22101.9 (8)C5—C3—C2115.8 (4)
C1—N1—C22135.9 (8)O5—C3—H3109.2
O4—C4—N1127.90 (19)C5—C3—H3109.2
O4—C4—O5122.2 (3)C2—C3—H3109.3
N1—C4—O5109.8 (3)C23—C22—N1108.1 (16)
O4—C4—O25116.8 (9)C23—C22—H22A110.5
N1—C4—O25111.6 (10)N1—C22—H22A110.4
N1—C1—P1115.39 (13)C23—C22—H22B109.8
N1—C1—H1B108.4N1—C22—H22B109.7
P1—C1—H1B108.4H22A—C22—H22B108.3
N1—C1—H1C108.4C4—O25—C23112.2 (16)
P1—C1—H1C108.4C23—C25—H25A109.5
H1B—C1—H1C107.5C23—C25—H25B109.5
HN2—N2—HN1108.1H25A—C25—H25B109.5
HN2—N2—HN3112.5C23—C25—H25C109.4
HN1—N2—HN3108.1H25A—C25—H25C109.5
HN2—N2—HN4115.2H25B—C25—H25C109.5
HN1—N2—HN4107.4C25—C23—C22112 (2)
HN3—N2—HN4105.2C25—C23—O25110.4 (17)
N1—C2—C3101.4 (3)C22—C23—O25100.2 (16)
N1—C2—H2A111.6C25—C23—H23111.1
C3—C2—H2A111.5C22—C23—H23111.5
N1—C2—H2B111.5O25—C23—H23111.2
C3—C2—H2B111.4
C2—N1—C4—O4−176.3 (3)O4—C4—O5—C3179.2 (2)
C1—N1—C4—O4−8.3 (4)N1—C4—O5—C32.6 (4)
C22—N1—C4—O4172.4 (11)O25—C4—O5—C3−96 (3)
C2—N1—C4—O50.1 (3)C4—O5—C3—C5120.3 (5)
C1—N1—C4—O5168.1 (3)C4—O5—C3—C2−3.9 (4)
C22—N1—C4—O5−11.2 (11)N1—C2—C3—O53.7 (4)
C2—N1—C4—O2526.4 (9)N1—C2—C3—C5−115.5 (5)
C1—N1—C4—O25−165.6 (9)C4—N1—C22—C23−25 (2)
C22—N1—C4—O2515.1 (13)C2—N1—C22—C23−165 (6)
C4—N1—C1—P1117.3 (2)C1—N1—C22—C23156.3 (11)
C2—N1—C1—P1−75.7 (3)O4—C4—O25—C23−161.7 (9)
C22—N1—C1—P1−63.7 (15)N1—C4—O25—C23−1.7 (15)
O1—P1—C1—N1−175.71 (13)O5—C4—O25—C2389 (3)
O3—P1—C1—N157.66 (16)N1—C22—C23—C25140 (2)
O2—P1—C1—N1−60.36 (15)N1—C22—C23—O2522 (2)
C4—N1—C2—C3−2.4 (4)C4—O25—C23—C25−132 (2)
C1—N1—C2—C3−170.3 (2)C4—O25—C23—C22−14 (2)
C22—N1—C2—C341 (4)
D—H···AD—HH···AD···AD—H···A
N2—HN1···O10.851.942.789 (2)177
O2—H1A···O3i1.071.532.5770 (19)166
N2—HN2···O1ii0.861.932.772 (2)165
N2—HN3···O3iii0.891.932.793 (2)161
N2—HN4···O4iv0.971.882.827 (2)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—HN1⋯O10.851.942.789 (2)177
O2—H1A⋯O3i1.071.532.5770 (19)166
N2—HN2⋯O1ii0.861.932.772 (2)165
N2—HN3⋯O3iii0.891.932.793 (2)161
N2—HN4⋯O4iv0.971.882.827 (2)167

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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