Literature DB >> 21583607

Methyl 5-phenyl-1,2,3,4,4a,5,5a,13c-octahydro-6H-benzo[f]chromeno[3,4-b]indolizine-5a-carboxyl-ate.

E Theboral Sugi Kamala, S Nirmala, L Sudha, S Kathiravan, R Raghunathan.   

Abstract

In the title compound, C(27)H(27)NO(3), the pyrrolidine ring exhibits a twist conformation and the piperidine ring exhibits a chair conformation. The pyrrolidine ring makes dihedral angles of 54.47 (5), 51.50 (5) and 73.37 (6)° with the napthalene ring system and the tetra-hydro-pyran and phenyl rings, respectively. The structure is stabilized by intra-molecular C-H⋯O and C-H⋯N inter-actions.

Entities:  

Year:  2009        PMID: 21583607      PMCID: PMC2977337          DOI: 10.1107/S1600536809026774

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the applications and biological activity of indolizine derivatives, see: Gubin et al. (1992 ▶); Gupta et al. (2003 ▶); Poty et al. (1994 ▶); Hema et al. (2003 ▶); Malonne et al. (1998 ▶); Medda et al. (2003 ▶). For puckering parameters, see: Cremer and Pople (1975 ▶). For asymmetry parameters, see: Nardelli (1983 ▶).

Experimental

Crystal data

C27H27NO3 M = 413.50 Triclinic, a = 9.4201 (3) Å b = 10.6752 (3) Å c = 11.0761 (3) Å α = 78.262 (2)° β = 77.911 (2)° γ = 87.346 (2)° V = 1066.34 (5) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.30 × 0.20 × 0.15 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.975, T max = 0.988 22685 measured reflections 4641 independent reflections 3461 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.122 S = 1.00 4641 reflections 281 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: APEX2 and SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809026774/bt2988sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809026774/bt2988Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H27NO3Z = 2
Mr = 413.50F(000) = 440
Triclinic, P1Dx = 1.288 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.4201 (3) ÅCell parameters from 22685 reflections
b = 10.6752 (3) Åθ = 2.0–27.0°
c = 11.0761 (3) ŵ = 0.08 mm1
α = 78.262 (2)°T = 293 K
β = 77.911 (2)°Needle, colourless
γ = 87.346 (2)°0.30 × 0.20 × 0.15 mm
V = 1066.34 (5) Å3
Bruker Kappa APEXII diffractometer4641 independent reflections
Radiation source: fine-focus sealed tube3461 reflections with I > 2σ(I)
graphiteRint = 0.026
ω and φ scansθmax = 27.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→12
Tmin = 0.975, Tmax = 0.988k = −13→13
22685 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.122w = 1/[σ2(Fo2) + (0.0534P)2 + 0.3168P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
4641 reflectionsΔρmax = 0.34 e Å3
281 parametersΔρmin = −0.23 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.012 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.54853 (15)0.76212 (14)0.13837 (13)0.0396 (3)
H1A0.48980.71710.21650.047*
H1B0.54540.85270.14030.047*
C20.70388 (16)0.71426 (15)0.12642 (15)0.0453 (4)
H2A0.70520.62210.13430.054*
H2B0.74390.73390.19430.054*
C30.79742 (17)0.77508 (18)0.00095 (16)0.0540 (4)
H3A0.89300.7357−0.00770.065*
H3B0.80890.8655−0.00160.065*
C40.72958 (17)0.75893 (18)−0.10770 (16)0.0504 (4)
H4A0.78540.8056−0.18640.060*
H4B0.72950.6692−0.11250.060*
C50.57534 (15)0.80960 (13)−0.08654 (13)0.0366 (3)
H50.58120.8987−0.07800.044*
C60.47933 (16)0.80945 (13)−0.18463 (13)0.0378 (3)
H60.46430.8996−0.22060.045*
C70.32917 (15)0.76056 (13)−0.10062 (13)0.0365 (3)
C80.33931 (14)0.78431 (12)0.02922 (13)0.0340 (3)
H80.33130.87620.02880.041*
C90.22386 (15)0.71384 (13)0.13304 (13)0.0376 (3)
C100.17673 (15)0.75355 (14)0.25133 (14)0.0412 (3)
C110.23444 (18)0.86035 (16)0.28129 (15)0.0476 (4)
H110.30680.90820.22200.057*
C120.1870 (2)0.8954 (2)0.39497 (17)0.0612 (5)
H120.22750.96610.41180.073*
C130.0784 (2)0.8262 (2)0.48593 (17)0.0714 (6)
H130.04780.84950.56380.086*
C140.0178 (2)0.7247 (2)0.46007 (17)0.0658 (5)
H14−0.05580.67970.52050.079*
C150.06357 (17)0.68546 (16)0.34362 (15)0.0501 (4)
C16−0.00152 (18)0.58123 (17)0.31539 (17)0.0572 (5)
H16−0.07480.53570.37580.069*
C170.04018 (17)0.54627 (16)0.20290 (18)0.0540 (4)
H17−0.00500.47820.18570.065*
C180.15284 (16)0.61359 (14)0.11133 (15)0.0431 (4)
C190.30894 (17)0.61779 (14)−0.08800 (15)0.0441 (4)
H19A0.30440.6000−0.16960.053*
H19B0.39210.5724−0.06120.053*
C200.53277 (16)0.74536 (14)−0.29578 (14)0.0413 (3)
C210.59051 (17)0.62247 (15)−0.28796 (15)0.0478 (4)
H210.60210.5754−0.21020.057*
C220.63086 (19)0.56903 (18)−0.39354 (18)0.0571 (4)
H220.66910.4866−0.38630.069*
C230.6149 (2)0.6367 (2)−0.50911 (18)0.0688 (5)
H230.64150.6004−0.58010.083*
C240.5594 (2)0.7582 (2)−0.51919 (17)0.0750 (6)
H240.54860.8048−0.59740.090*
C250.5192 (2)0.81199 (18)−0.41372 (15)0.0589 (5)
H250.48230.8949−0.42220.071*
C260.20768 (16)0.83093 (14)−0.15768 (14)0.0420 (4)
C270.0803 (2)1.02515 (18)−0.1933 (2)0.0728 (6)
H27A0.07371.1075−0.17030.109*
H27B−0.01260.9839−0.16560.109*
H27C0.10931.0355−0.28320.109*
N10.49017 (12)0.74134 (10)0.03267 (10)0.0349 (3)
O10.17989 (12)0.57199 (10)0.00045 (11)0.0524 (3)
O20.13962 (15)0.78741 (13)−0.21840 (14)0.0738 (4)
O30.18643 (13)0.94760 (11)−0.13447 (13)0.0610 (4)
U11U22U33U12U13U23
C10.0406 (8)0.0426 (8)0.0360 (8)0.0003 (6)−0.0123 (6)−0.0045 (6)
C20.0417 (8)0.0485 (8)0.0495 (9)0.0022 (7)−0.0186 (7)−0.0092 (7)
C30.0359 (8)0.0718 (11)0.0571 (11)−0.0019 (8)−0.0116 (7)−0.0172 (9)
C40.0384 (8)0.0672 (10)0.0466 (9)−0.0003 (7)−0.0068 (7)−0.0153 (8)
C50.0401 (8)0.0355 (7)0.0331 (7)−0.0035 (6)−0.0068 (6)−0.0042 (6)
C60.0427 (8)0.0346 (7)0.0344 (8)0.0016 (6)−0.0092 (6)−0.0020 (6)
C70.0380 (7)0.0355 (7)0.0368 (8)0.0032 (6)−0.0112 (6)−0.0062 (6)
C80.0354 (7)0.0320 (6)0.0348 (7)0.0028 (5)−0.0116 (6)−0.0035 (5)
C90.0332 (7)0.0377 (7)0.0384 (8)0.0052 (6)−0.0093 (6)0.0010 (6)
C100.0353 (7)0.0467 (8)0.0377 (8)0.0105 (6)−0.0105 (6)0.0016 (6)
C110.0452 (9)0.0583 (9)0.0393 (8)0.0089 (7)−0.0116 (7)−0.0083 (7)
C120.0594 (11)0.0808 (13)0.0485 (10)0.0128 (9)−0.0170 (9)−0.0209 (9)
C130.0698 (13)0.1044 (17)0.0372 (10)0.0179 (12)−0.0085 (9)−0.0145 (10)
C140.0548 (11)0.0877 (14)0.0406 (10)0.0156 (10)0.0001 (8)0.0062 (9)
C150.0393 (8)0.0583 (10)0.0431 (9)0.0113 (7)−0.0065 (7)0.0075 (7)
C160.0392 (9)0.0582 (10)0.0591 (11)0.0025 (8)0.0005 (8)0.0119 (8)
C170.0380 (8)0.0464 (9)0.0707 (12)−0.0031 (7)−0.0078 (8)0.0018 (8)
C180.0356 (7)0.0408 (8)0.0492 (9)0.0031 (6)−0.0088 (7)−0.0013 (7)
C190.0437 (8)0.0409 (8)0.0480 (9)−0.0014 (6)−0.0076 (7)−0.0113 (7)
C200.0406 (8)0.0486 (8)0.0342 (8)−0.0004 (6)−0.0088 (6)−0.0058 (6)
C210.0476 (9)0.0520 (9)0.0443 (9)0.0055 (7)−0.0102 (7)−0.0111 (7)
C220.0482 (9)0.0654 (11)0.0605 (11)0.0050 (8)−0.0059 (8)−0.0255 (9)
C230.0632 (12)0.0998 (16)0.0486 (11)0.0020 (11)−0.0046 (9)−0.0338 (11)
C240.0890 (15)0.1004 (16)0.0344 (10)0.0088 (13)−0.0153 (10)−0.0098 (10)
C250.0689 (12)0.0660 (11)0.0385 (9)0.0091 (9)−0.0128 (8)−0.0031 (8)
C260.0432 (8)0.0482 (8)0.0380 (8)0.0029 (7)−0.0154 (7)−0.0098 (6)
C270.0742 (13)0.0566 (11)0.0990 (16)0.0198 (9)−0.0548 (12)−0.0080 (10)
N10.0328 (6)0.0373 (6)0.0334 (6)0.0007 (5)−0.0090 (5)−0.0022 (5)
O10.0482 (6)0.0477 (6)0.0609 (7)−0.0112 (5)−0.0050 (5)−0.0140 (5)
O20.0823 (10)0.0762 (9)0.0850 (10)0.0176 (7)−0.0542 (8)−0.0328 (8)
O30.0680 (8)0.0456 (6)0.0851 (9)0.0183 (5)−0.0509 (7)−0.0167 (6)
C1—N11.4521 (18)C12—H120.9300
C1—C21.5157 (19)C13—C141.355 (3)
C1—H1A0.9700C13—H130.9300
C1—H1B0.9700C14—C151.412 (3)
C2—C31.517 (2)C14—H140.9300
C2—H2A0.9700C15—C161.413 (3)
C2—H2B0.9700C16—C171.348 (3)
C3—C41.518 (2)C16—H160.9300
C3—H3A0.9700C17—C181.412 (2)
C3—H3B0.9700C17—H170.9300
C4—C51.515 (2)C18—O11.3604 (19)
C4—H4A0.9700C19—O11.4276 (18)
C4—H4B0.9700C19—H19A0.9700
C5—N11.4618 (17)C19—H19B0.9700
C5—C61.553 (2)C20—C251.383 (2)
C5—H50.9800C20—C211.390 (2)
C6—C201.5128 (19)C21—C221.379 (2)
C6—C71.568 (2)C21—H210.9300
C6—H60.9800C22—C231.370 (3)
C7—C261.5178 (19)C22—H220.9300
C7—C191.5191 (19)C23—C241.368 (3)
C7—C81.5328 (19)C23—H230.9300
C8—N11.4788 (16)C24—C251.380 (3)
C8—C91.5070 (19)C24—H240.9300
C8—H80.9800C25—H250.9300
C9—C181.375 (2)C26—O21.1892 (18)
C9—C101.435 (2)C26—O31.3203 (18)
C10—C111.412 (2)C27—O31.4445 (18)
C10—C151.422 (2)C27—H27A0.9600
C11—C121.366 (2)C27—H27B0.9600
C11—H110.9300C27—H27C0.9600
C12—C131.393 (3)
N1—C1—C2110.04 (12)C11—C12—H12119.7
N1—C1—H1A109.7C13—C12—H12119.7
C2—C1—H1A109.7C14—C13—C12119.46 (18)
N1—C1—H1B109.7C14—C13—H13120.3
C2—C1—H1B109.7C12—C13—H13120.3
H1A—C1—H1B108.2C13—C14—C15121.63 (18)
C1—C2—C3111.46 (13)C13—C14—H14119.2
C1—C2—H2A109.3C15—C14—H14119.2
C3—C2—H2A109.3C14—C15—C16121.75 (17)
C1—C2—H2B109.3C14—C15—C10119.33 (18)
C3—C2—H2B109.3C16—C15—C10118.91 (15)
H2A—C2—H2B108.0C17—C16—C15121.48 (16)
C2—C3—C4110.99 (14)C17—C16—H16119.3
C2—C3—H3A109.4C15—C16—H16119.3
C4—C3—H3A109.4C16—C17—C18119.65 (17)
C2—C3—H3B109.4C16—C17—H17120.2
C4—C3—H3B109.4C18—C17—H17120.2
H3A—C3—H3B108.0O1—C18—C9124.15 (14)
C5—C4—C3108.85 (13)O1—C18—C17113.58 (14)
C5—C4—H4A109.9C9—C18—C17122.24 (15)
C3—C4—H4A109.9O1—C19—C7111.98 (12)
C5—C4—H4B109.9O1—C19—H19A109.2
C3—C4—H4B109.9C7—C19—H19A109.2
H4A—C4—H4B108.3O1—C19—H19B109.2
N1—C5—C4110.61 (12)C7—C19—H19B109.2
N1—C5—C6104.91 (11)H19A—C19—H19B107.9
C4—C5—C6120.75 (12)C25—C20—C21117.25 (15)
N1—C5—H5106.6C25—C20—C6117.84 (14)
C4—C5—H5106.6C21—C20—C6124.88 (13)
C6—C5—H5106.6C22—C21—C20121.16 (16)
C20—C6—C5120.22 (12)C22—C21—H21119.4
C20—C6—C7115.04 (12)C20—C21—H21119.4
C5—C6—C7103.10 (11)C23—C22—C21120.37 (17)
C20—C6—H6105.8C23—C22—H22119.8
C5—C6—H6105.8C21—C22—H22119.8
C7—C6—H6105.8C24—C23—C22119.46 (17)
C26—C7—C19108.51 (12)C24—C23—H23120.3
C26—C7—C8115.68 (11)C22—C23—H23120.3
C19—C7—C8107.65 (11)C23—C24—C25120.25 (18)
C26—C7—C6109.40 (11)C23—C24—H24119.9
C19—C7—C6112.66 (11)C25—C24—H24119.9
C8—C7—C6102.97 (11)C24—C25—C20121.49 (18)
N1—C8—C9115.59 (10)C24—C25—H25119.3
N1—C8—C799.80 (10)C20—C25—H25119.3
C9—C8—C7112.33 (12)O2—C26—O3123.07 (14)
N1—C8—H8109.6O2—C26—C7124.22 (14)
C9—C8—H8109.6O3—C26—C7112.70 (12)
C7—C8—H8109.6O3—C27—H27A109.5
C18—C9—C10118.14 (13)O3—C27—H27B109.5
C18—C9—C8119.29 (13)H27A—C27—H27B109.5
C10—C9—C8122.39 (13)O3—C27—H27C109.5
C11—C10—C15117.06 (15)H27A—C27—H27C109.5
C11—C10—C9123.40 (14)H27B—C27—H27C109.5
C15—C10—C9119.52 (15)C1—N1—C5110.91 (11)
C12—C11—C10121.81 (17)C1—N1—C8116.93 (11)
C12—C11—H11119.1C5—N1—C8104.15 (10)
C10—C11—H11119.1C18—O1—C19116.88 (12)
C11—C12—C13120.7 (2)C26—O3—C27116.46 (13)
D—H···AD—HH···AD···AD—H···A
C8—H8···O30.982.472.8240 (19)101
C19—H19B···N10.972.552.885 (2)100
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8⋯O30.982.472.8240 (19)101
C19—H19B⋯N10.972.552.885 (2)100
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A novel class of calcium-entry blockers: the 1[[4-(aminoalkoxy)phenyl]sulfonyl]indolizines.

Authors:  J Gubin; J Lucchetti; J Mahaux; D Nisato; G Rosseels; M Clinet; P Polster; P Chatelain
Journal:  J Med Chem       Date:  1992-03-20       Impact factor: 7.446

3.  3-(4-Chlorobenzoyl)-7-(N,N-dimethylamino)-1-phenylindolizine and 3-(2,4-dichlorobenzoyl)-7-(N,N-dimethylamino)-1-phenylindolizine.

Authors:  R Hema; V Parthasarathi; K Sarkunam; M Nallu; Anthony Linden
Journal:  Acta Crystallogr C       Date:  2003-11-14       Impact factor: 1.172

4.  Phospholipid microspheres: a novel delivery mode for targeting antileishmanial agent in experimental leishmaniasis.

Authors:  S Medda; P Jaisankar; R K Manna; B Pal; V S Giri; M K Basu
Journal:  J Drug Target       Date:  2003-02       Impact factor: 5.121

5.  A quantitative structure-activity relationship study on a novel class of calcium-entry blockers: 1-[(4-(aminoalkoxy)phenyl)sulphonyl]indolizines.

Authors:  S P Gupta; Anoop N Mathur; A N Nagappa; Dalip Kumar; S Kumaran
Journal:  Eur J Med Chem       Date:  2003-10       Impact factor: 6.514

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  2 in total

1.  Methyl 9-(4-bromo-phen-yl)-8a,9,9a,10,11,12,13,14a-octa-hydro-8H-benzo[f]chromeno[3,4-b]indolizine-8a-car-box-ylate.

Authors:  B Gunasekaran; S Kathiravan; R Raghunathan; G Chakkaravarthi; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-26

2.  Methyl 9-p-tolyl-8a,9,9a,10,11,12,13,14a-octa-hydro-8H-benzo[f]chromeno[3,4-b]indolizine-8a-carboxyl-ate.

Authors:  B Gunasekaran; S Kathiravan; R Raghunathan; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-25
  2 in total

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