Literature DB >> 21583573

2-(o-Tol-yloxy)pyrimidine.

Nasir Shah Bakhtiar1, Zanariah Abdullah, Seik Weng Ng.   

Abstract

The title compound, C(11)H(10)N(2)O, crystallizes with two mol-ecules in the asymmetric unit. The angle at the ether O atom is widened to 118.13 (15)° [117.89 (16)° for the second mol-ecule in the asymmetric unit]; the six-membered rings subtend a dihedral angle of 84.3 (1)° [87.4 (1)° in the second mol-ecule].

Entities:  

Year:  2009        PMID: 21583573      PMCID: PMC2977185          DOI: 10.1107/S1600536809026609

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For 2-phenoxy­pyrimidine, see: Shah Bakhtiar et al. (2009 ▶).

Experimental

Crystal data

C11H10N2O M = 186.21 Orthorhombic, a = 7.5197 (2) Å b = 12.7997 (3) Å c = 20.3238 (4) Å V = 1956.16 (8) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 153 K 0.35 × 0.25 × 0.15 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: none 12792 measured reflections 2317 independent reflections 2030 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.088 S = 1.02 2317 reflections 255 parameters 1 restraint H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809026609/bt2995sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809026609/bt2995Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H10N2OF(000) = 784
Mr = 186.21Dx = 1.265 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 3906 reflections
a = 7.5197 (2) Åθ = 2.6–27.9°
b = 12.7997 (3) ŵ = 0.08 mm1
c = 20.3238 (4) ÅT = 153 K
V = 1956.16 (8) Å3Block, colorless
Z = 80.35 × 0.25 × 0.15 mm
Bruker SMART APEX diffractometer2030 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
graphiteθmax = 27.5°, θmin = 1.6°
ω scansh = −9→9
12792 measured reflectionsk = −16→16
2317 independent reflectionsl = −26→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0474P)2 + 0.3519P] where P = (Fo2 + 2Fc2)/3
2317 reflections(Δ/σ)max = 0.001
255 parametersΔρmax = 0.16 e Å3
1 restraintΔρmin = −0.19 e Å3
xyzUiso*/Ueq
O10.09137 (18)0.69839 (11)0.50102 (8)0.0294 (3)
O20.3463 (2)0.79763 (11)0.83583 (8)0.0288 (3)
N10.3704 (2)0.76815 (13)0.51731 (9)0.0290 (4)
N20.3222 (2)0.59497 (13)0.47797 (10)0.0346 (4)
N30.0668 (3)0.73277 (14)0.81493 (10)0.0311 (4)
N40.1165 (3)0.90210 (14)0.85951 (10)0.0342 (4)
C10.2716 (3)0.68835 (14)0.49926 (10)0.0240 (4)
C20.5457 (3)0.75182 (17)0.51316 (13)0.0346 (5)
H20.62410.80680.52520.041*
C30.6173 (3)0.65849 (18)0.49217 (13)0.0369 (5)
H30.74210.64780.48950.044*
C40.4976 (3)0.58168 (19)0.47530 (14)0.0393 (6)
H40.54240.51600.46110.047*
C50.0193 (3)0.78821 (16)0.53078 (11)0.0260 (4)
C6−0.0168 (3)0.87417 (16)0.49211 (12)0.0302 (5)
H60.01680.87510.44710.036*
C7−0.1029 (3)0.95922 (17)0.51989 (13)0.0369 (5)
H7−0.12911.01910.49400.044*
C8−0.1500 (3)0.95613 (18)0.58534 (14)0.0400 (6)
H8−0.20971.01400.60460.048*
C9−0.1111 (3)0.8691 (2)0.62345 (13)0.0419 (6)
H9−0.14350.86870.66860.050*
C10−0.0255 (3)0.78224 (18)0.59682 (11)0.0318 (5)
C110.0132 (4)0.6853 (2)0.63601 (14)0.0484 (7)
H11A0.14200.67380.63770.073*
H11B−0.04420.62510.61510.073*
H11C−0.03280.69360.68080.073*
C120.1667 (3)0.81024 (15)0.83622 (10)0.0239 (4)
C13−0.1090 (3)0.75137 (18)0.81651 (12)0.0362 (5)
H13−0.18790.69820.80190.043*
C14−0.1789 (3)0.84386 (17)0.83828 (12)0.0360 (5)
H14−0.30340.85650.83830.043*
C15−0.0596 (3)0.91746 (18)0.86010 (14)0.0392 (6)
H15−0.10390.98200.87630.047*
C160.4168 (3)0.71305 (15)0.79991 (10)0.0254 (4)
C170.4576 (3)0.62233 (17)0.83289 (13)0.0337 (5)
H170.42910.61480.87820.040*
C180.5409 (3)0.54212 (18)0.79914 (15)0.0417 (6)
H180.57000.47890.82110.050*
C190.5813 (3)0.5547 (2)0.73329 (15)0.0445 (6)
H190.63880.49990.71000.053*
C200.5387 (3)0.6461 (2)0.70137 (13)0.0433 (6)
H200.56630.65300.65600.052*
C210.4562 (3)0.72886 (19)0.73387 (12)0.0328 (5)
C220.4127 (4)0.8309 (2)0.70067 (14)0.0513 (7)
H22A0.47730.88770.72250.077*
H22B0.28450.84390.70360.077*
H22C0.44810.82750.65430.077*
U11U22U33U12U13U23
O10.0202 (8)0.0232 (7)0.0447 (9)−0.0012 (6)−0.0002 (6)−0.0071 (6)
O20.0207 (8)0.0268 (7)0.0389 (8)0.0008 (6)−0.0035 (6)−0.0081 (6)
N10.0227 (9)0.0239 (8)0.0404 (10)−0.0021 (7)−0.0004 (8)−0.0044 (8)
N20.0261 (10)0.0239 (9)0.0540 (12)0.0003 (7)−0.0015 (9)−0.0096 (8)
N30.0246 (10)0.0255 (9)0.0433 (11)−0.0027 (7)0.0012 (8)−0.0061 (8)
N40.0274 (11)0.0249 (9)0.0503 (11)0.0003 (7)−0.0039 (9)−0.0087 (9)
C10.0213 (10)0.0214 (9)0.0292 (10)−0.0003 (7)−0.0012 (8)0.0014 (8)
C20.0232 (12)0.0315 (12)0.0490 (14)−0.0067 (9)−0.0006 (10)−0.0074 (11)
C30.0199 (11)0.0410 (13)0.0499 (13)0.0042 (9)−0.0008 (10)−0.0085 (11)
C40.0296 (12)0.0316 (12)0.0567 (15)0.0092 (9)−0.0024 (11)−0.0134 (11)
C50.0183 (10)0.0241 (10)0.0357 (11)−0.0007 (7)−0.0015 (8)−0.0041 (8)
C60.0259 (11)0.0275 (10)0.0373 (11)−0.0023 (8)0.0013 (9)−0.0001 (9)
C70.0269 (12)0.0251 (10)0.0587 (15)−0.0006 (8)−0.0047 (11)−0.0002 (10)
C80.0259 (12)0.0328 (12)0.0614 (15)0.0031 (9)−0.0020 (11)−0.0210 (11)
C90.0304 (13)0.0549 (15)0.0403 (13)−0.0003 (11)0.0010 (10)−0.0152 (12)
C100.0232 (11)0.0375 (12)0.0346 (12)−0.0014 (9)−0.0031 (8)−0.0004 (10)
C110.0465 (16)0.0536 (16)0.0450 (14)0.0039 (12)−0.0021 (12)0.0111 (12)
C120.0229 (11)0.0226 (9)0.0260 (9)−0.0012 (8)−0.0022 (8)0.0010 (8)
C130.0246 (12)0.0349 (12)0.0492 (13)−0.0044 (9)0.0013 (10)−0.0113 (11)
C140.0226 (12)0.0401 (12)0.0453 (12)0.0021 (9)−0.0006 (10)−0.0090 (11)
C150.0315 (13)0.0321 (12)0.0541 (14)0.0064 (9)−0.0028 (11)−0.0128 (11)
C160.0175 (10)0.0240 (10)0.0346 (11)−0.0008 (8)−0.0011 (8)−0.0047 (8)
C170.0271 (12)0.0289 (11)0.0452 (13)−0.0003 (9)0.0037 (10)0.0030 (10)
C180.0302 (13)0.0240 (11)0.0709 (17)0.0006 (9)0.0035 (12)−0.0010 (11)
C190.0294 (13)0.0401 (13)0.0640 (16)0.0009 (10)0.0028 (12)−0.0244 (12)
C200.0332 (14)0.0600 (17)0.0368 (12)0.0010 (12)0.0037 (10)−0.0129 (12)
C210.0255 (12)0.0375 (12)0.0353 (11)−0.0013 (9)−0.0024 (9)−0.0001 (10)
C220.0511 (17)0.0592 (18)0.0435 (14)0.0078 (14)0.0015 (13)0.0192 (13)
O1—C11.362 (2)C9—C101.394 (3)
O1—C51.408 (2)C9—H90.9500
O2—C121.360 (2)C10—C111.503 (4)
O2—C161.409 (2)C11—H11A0.9800
N1—C11.315 (3)C11—H11B0.9800
N1—C21.337 (3)C11—H11C0.9800
N2—C41.332 (3)C13—C141.369 (3)
N2—C11.327 (2)C13—H130.9500
N3—C121.317 (3)C14—C151.375 (3)
N3—C131.343 (3)C14—H140.9500
N4—C121.323 (3)C15—H150.9500
N4—C151.339 (3)C16—C171.375 (3)
C2—C31.378 (3)C16—C211.389 (3)
C2—H20.9500C17—C181.384 (3)
C3—C41.376 (3)C17—H170.9500
C3—H30.9500C18—C191.382 (4)
C4—H40.9500C18—H180.9500
C5—C61.379 (3)C19—C201.376 (4)
C5—C101.386 (3)C19—H190.9500
C6—C71.387 (3)C20—C211.394 (3)
C6—H60.9500C20—H200.9500
C7—C81.377 (4)C21—C221.506 (3)
C7—H70.9500C22—H22A0.9800
C8—C91.388 (4)C22—H22B0.9800
C8—H80.9500C22—H22C0.9800
C1—O1—C5118.13 (15)C10—C11—H11C109.5
C12—O2—C16117.89 (16)H11A—C11—H11C109.5
C1—N1—C2114.70 (18)H11B—C11—H11C109.5
C4—N2—C1114.36 (19)N3—C12—N4128.6 (2)
C12—N3—C13114.84 (19)N3—C12—O2118.38 (18)
C12—N4—C15114.59 (19)N4—C12—O2113.02 (17)
N1—C1—N2128.94 (19)N3—C13—C14122.6 (2)
N1—C1—O1118.79 (17)N3—C13—H13118.7
N2—C1—O1112.27 (17)C14—C13—H13118.7
N1—C2—C3122.7 (2)C13—C14—C15116.5 (2)
N1—C2—H2118.6C13—C14—H14121.8
C3—C2—H2118.6C15—C14—H14121.8
C2—C3—C4116.2 (2)N4—C15—C14122.8 (2)
C2—C3—H3121.9N4—C15—H15118.6
C4—C3—H3121.9C14—C15—H15118.6
N2—C4—C3123.1 (2)C17—C16—C21123.1 (2)
N2—C4—H4118.4C17—C16—O2118.68 (19)
C3—C4—H4118.4C21—C16—O2117.95 (19)
C6—C5—C10123.2 (2)C16—C17—C18119.0 (2)
C6—C5—O1118.85 (19)C16—C17—H17120.5
C10—C5—O1117.69 (19)C18—C17—H17120.5
C5—C6—C7119.1 (2)C17—C18—C19119.6 (2)
C5—C6—H6120.4C17—C18—H18120.2
C7—C6—H6120.4C19—C18—H18120.2
C8—C7—C6119.4 (2)C20—C19—C18120.3 (2)
C8—C7—H7120.3C20—C19—H19119.9
C6—C7—H7120.3C18—C19—H19119.9
C7—C8—C9120.5 (2)C19—C20—C21121.8 (2)
C7—C8—H8119.7C19—C20—H20119.1
C9—C8—H8119.7C21—C20—H20119.1
C8—C9—C10121.4 (2)C16—C21—C20116.2 (2)
C8—C9—H9119.3C16—C21—C22120.9 (2)
C10—C9—H9119.3C20—C21—C22122.9 (2)
C5—C10—C9116.4 (2)C21—C22—H22A109.5
C5—C10—C11120.8 (2)C21—C22—H22B109.5
C9—C10—C11122.8 (2)H22A—C22—H22B109.5
C10—C11—H11A109.5C21—C22—H22C109.5
C10—C11—H11B109.5H22A—C22—H22C109.5
H11A—C11—H11B109.5H22B—C22—H22C109.5
C2—N1—C1—N20.2 (3)C13—N3—C12—N41.1 (3)
C2—N1—C1—O1−179.1 (2)C13—N3—C12—O2−179.6 (2)
C4—N2—C1—N10.5 (4)C15—N4—C12—N3−1.2 (3)
C4—N2—C1—O1179.9 (2)C15—N4—C12—O2179.5 (2)
C5—O1—C1—N1−8.8 (3)C16—O2—C12—N313.5 (3)
C5—O1—C1—N2171.72 (19)C16—O2—C12—N4−167.07 (18)
C1—N1—C2—C3−0.5 (4)C12—N3—C13—C140.3 (3)
N1—C2—C3—C40.1 (4)N3—C13—C14—C15−1.3 (4)
C1—N2—C4—C3−0.9 (4)C12—N4—C15—C140.0 (4)
C2—C3—C4—N20.7 (4)C13—C14—C15—N41.1 (4)
C1—O1—C5—C692.2 (2)C12—O2—C16—C17−97.0 (2)
C1—O1—C5—C10−93.2 (2)C12—O2—C16—C2188.6 (2)
C10—C5—C6—C7−0.3 (3)C21—C16—C17—C18−0.4 (3)
O1—C5—C6—C7174.07 (18)O2—C16—C17—C18−174.54 (19)
C5—C6—C7—C80.1 (3)C16—C17—C18—C190.0 (3)
C6—C7—C8—C90.4 (3)C17—C18—C19—C20−0.2 (4)
C7—C8—C9—C10−0.7 (4)C18—C19—C20—C210.7 (4)
C6—C5—C10—C90.0 (3)C17—C16—C21—C200.9 (3)
O1—C5—C10—C9−174.42 (19)O2—C16—C21—C20175.07 (19)
C6—C5—C10—C11178.4 (2)C17—C16—C21—C22−178.4 (2)
O1—C5—C10—C114.0 (3)O2—C16—C21—C22−4.2 (3)
C8—C9—C10—C50.5 (3)C19—C20—C21—C16−1.1 (4)
C8—C9—C10—C11−177.9 (2)C19—C20—C21—C22178.2 (2)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Phenoxy-pyrimidine.

Authors:  Nasir Shah Bakhtiar; Zanariah Abdullah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-13
  2 in total

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