Literature DB >> 21583554

Ethyl 2-(3,4-dimethoxy-benz-yl)-1-phenyl-sulfonyl-1H-indole-3-carboxyl-ate.

B Gunasekaran, Radhakrishnan Sureshbabu, A K Mohanakrishnan, G Chakkaravarthi, V Manivannan.   

Abstract

In the title compound, C(26)H(25)NO(6)S, the phenyl ring forms a dihedral angle of 82.5 (1)° with the indole ring system. The mol-ecular structure is stabilized by weak intra-molecular C-H⋯O inter-actions and the crystal structure is stabilized by weak inter-molecular C-H⋯O inter-actions.

Entities:  

Year:  2009        PMID: 21583554      PMCID: PMC2977166          DOI: 10.1107/S1600536809026506

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of indoles see: Macor et al. (1992 ▶); Williams et al. (1993 ▶); For related structures, see: Chakkaravarthi et al. (2007 ▶, 2008 ▶). For graph set notation see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C26H25NO6S M = 479.53 Triclinic, a = 9.2914 (3) Å b = 9.3008 (3) Å c = 14.1561 (5) Å α = 87.367 (2)° β = 76.158 (2)° γ = 87.877 (2)° V = 1186.13 (7) Å3 Z = 2 Mo Kα radiation μ = 0.18 mm−1 T = 295 K 0.24 × 0.20 × 0.16 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.958, T max = 0.972 26965 measured reflections 5046 independent reflections 3632 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.124 S = 1.03 5046 reflections 310 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809026506/bt2993sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809026506/bt2993Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H25NO6SZ = 2
Mr = 479.53F(000) = 504
Triclinic, P1Dx = 1.343 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.2914 (3) ÅCell parameters from 5120 reflections
b = 9.3008 (3) Åθ = 2.4–25.1°
c = 14.1561 (5) ŵ = 0.18 mm1
α = 87.367 (2)°T = 295 K
β = 76.158 (2)°Block, colourless
γ = 87.877 (2)°0.24 × 0.20 × 0.16 mm
V = 1186.13 (7) Å3
Bruker Kappa APEX2 diffractometer5046 independent reflections
Radiation source: fine-focus sealed tube3632 reflections with I > 2σ(I)
graphiteRint = 0.025
ω and φ scansθmax = 26.8°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.958, Tmax = 0.972k = −11→11
26965 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0563P)2 + 0.284P] where P = (Fo2 + 2Fc2)/3
5046 reflections(Δ/σ)max < 0.001
310 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.29 e Å3
xyzUiso*/Ueq
S10.13534 (6)−0.05077 (5)0.22554 (4)0.06267 (17)
O4−0.19660 (14)0.34677 (15)−0.01641 (10)0.0687 (4)
N10.06324 (16)0.04353 (16)0.14286 (11)0.0546 (4)
O20.26358 (17)−0.12263 (15)0.17097 (12)0.0813 (4)
O10.01860 (18)−0.13039 (16)0.28540 (12)0.0863 (5)
C120.05829 (19)0.2019 (2)0.01735 (12)0.0534 (4)
O5−0.2124 (3)0.48992 (18)0.40802 (13)0.1186 (7)
O3−0.34719 (17)0.2500 (2)0.11472 (13)0.1079 (6)
C24−0.3063 (2)0.0625 (2)0.41242 (14)0.0635 (5)
H24−0.3268−0.03500.41580.076*
C19−0.24165 (19)0.12692 (19)0.32427 (13)0.0548 (4)
C13−0.08945 (18)0.1877 (2)0.07827 (13)0.0540 (4)
C10.19069 (19)0.07726 (18)0.29540 (13)0.0532 (4)
C14−0.08487 (18)0.09319 (19)0.15310 (13)0.0536 (4)
C20.3292 (2)0.1354 (2)0.26491 (14)0.0611 (5)
H20.39280.10830.20680.073*
C20−0.2098 (2)0.2712 (2)0.32182 (13)0.0633 (5)
H20−0.16520.31680.26280.076*
C18−0.2119 (2)0.0430 (2)0.23233 (14)0.0632 (5)
H18A−0.1932−0.05720.24890.076*
H18B−0.30060.04770.20750.076*
C70.15157 (19)0.11180 (19)0.05862 (13)0.0530 (4)
O6−0.3423 (2)0.3687 (2)0.57147 (12)0.1124 (7)
C80.3023 (2)0.0979 (2)0.01668 (15)0.0659 (5)
H80.36350.03640.04430.079*
C15−0.2254 (2)0.2614 (2)0.06311 (15)0.0637 (5)
C100.2676 (2)0.2679 (3)−0.10809 (15)0.0771 (6)
H100.30860.3210−0.16480.092*
C23−0.3416 (2)0.1395 (3)0.49619 (15)0.0721 (6)
H23−0.38620.09370.55520.087*
C22−0.3116 (2)0.2824 (2)0.49306 (14)0.0734 (6)
C30.3721 (2)0.2339 (2)0.32159 (16)0.0724 (6)
H30.46530.27390.30190.087*
C110.1178 (2)0.2816 (2)−0.06740 (14)0.0677 (5)
H110.05770.3429−0.09610.081*
C60.0959 (2)0.1151 (3)0.38187 (15)0.0730 (6)
H60.00310.07440.40240.088*
C21−0.2426 (3)0.3481 (2)0.40464 (15)0.0719 (6)
C90.3577 (2)0.1780 (3)−0.06701 (16)0.0741 (6)
H90.45840.1711−0.09650.089*
C16−0.3218 (3)0.4260 (2)−0.03882 (19)0.0812 (6)
H16A−0.36490.49080.01280.097*
H16B−0.39710.3602−0.04530.097*
C50.1408 (3)0.2136 (3)0.43708 (17)0.0882 (7)
H50.07770.24050.49550.106*
C40.2778 (3)0.2730 (3)0.40702 (17)0.0809 (6)
H40.30680.34040.44490.097*
C17−0.2667 (3)0.5085 (3)−0.1315 (2)0.1058 (9)
H17A−0.19230.5732−0.12410.159*
H17B−0.34750.5627−0.14840.159*
H17C−0.22470.4433−0.18200.159*
C25−0.1090 (5)0.5491 (3)0.3324 (2)0.170 (2)
H25A−0.01500.50040.32840.255*
H25B−0.10030.64930.34300.255*
H25C−0.13900.53920.27280.255*
C26−0.4361 (4)0.3220 (4)0.65636 (19)0.1280 (12)
H26A−0.52900.29740.64370.192*
H26B−0.45240.39710.70240.192*
H26C−0.39270.23880.68260.192*
U11U22U33U12U13U23
S10.0670 (3)0.0450 (3)0.0787 (3)−0.0027 (2)−0.0224 (2)−0.0013 (2)
O40.0577 (8)0.0723 (9)0.0770 (9)0.0095 (6)−0.0196 (7)−0.0045 (7)
N10.0505 (8)0.0554 (8)0.0594 (9)−0.0013 (6)−0.0142 (7)−0.0106 (7)
O20.0858 (10)0.0559 (8)0.1053 (12)0.0212 (7)−0.0288 (9)−0.0201 (8)
O10.0913 (11)0.0628 (9)0.1081 (12)−0.0266 (8)−0.0310 (9)0.0210 (8)
C120.0492 (9)0.0633 (11)0.0486 (10)0.0017 (8)−0.0110 (7)−0.0180 (8)
O50.183 (2)0.0696 (10)0.0809 (11)−0.0411 (12)0.0196 (12)−0.0157 (9)
O30.0499 (8)0.1632 (18)0.0973 (12)0.0196 (10)0.0004 (8)0.0213 (12)
C240.0580 (11)0.0606 (11)0.0689 (13)−0.0168 (9)−0.0097 (9)0.0126 (10)
C190.0467 (9)0.0563 (10)0.0592 (11)−0.0086 (8)−0.0079 (8)0.0014 (8)
C130.0466 (9)0.0643 (11)0.0515 (10)0.0006 (8)−0.0106 (7)−0.0143 (9)
C10.0537 (10)0.0507 (10)0.0561 (10)0.0013 (8)−0.0166 (8)0.0045 (8)
C140.0486 (9)0.0563 (10)0.0577 (10)−0.0051 (8)−0.0130 (8)−0.0162 (8)
C20.0586 (11)0.0645 (11)0.0599 (11)−0.0039 (9)−0.0135 (9)−0.0014 (9)
C200.0734 (12)0.0599 (11)0.0489 (10)−0.0141 (9)0.0015 (9)0.0043 (8)
C180.0546 (10)0.0623 (11)0.0725 (12)−0.0128 (9)−0.0123 (9)−0.0068 (9)
C70.0496 (9)0.0565 (10)0.0540 (10)−0.0004 (8)−0.0112 (8)−0.0185 (8)
O60.1424 (17)0.1171 (14)0.0607 (10)−0.0368 (12)0.0179 (10)−0.0204 (9)
C80.0511 (10)0.0770 (13)0.0694 (13)0.0075 (9)−0.0123 (9)−0.0190 (10)
C150.0533 (11)0.0792 (13)0.0597 (12)0.0057 (9)−0.0148 (9)−0.0144 (10)
C100.0677 (13)0.1025 (17)0.0533 (11)−0.0056 (12)0.0022 (10)−0.0074 (11)
C230.0682 (12)0.0859 (15)0.0555 (12)−0.0210 (11)−0.0023 (9)0.0174 (11)
C220.0777 (14)0.0842 (15)0.0511 (11)−0.0149 (11)0.0008 (10)−0.0037 (10)
C30.0688 (13)0.0759 (13)0.0768 (14)−0.0156 (10)−0.0245 (11)0.0005 (11)
C110.0611 (11)0.0893 (15)0.0502 (11)0.0036 (10)−0.0086 (9)−0.0067 (10)
C60.0588 (11)0.0993 (16)0.0610 (12)−0.0080 (11)−0.0135 (9)−0.0048 (11)
C210.0886 (15)0.0598 (12)0.0582 (12)−0.0186 (10)0.0031 (10)−0.0015 (9)
C90.0508 (10)0.0985 (16)0.0684 (13)0.0021 (11)−0.0018 (10)−0.0234 (12)
C160.0718 (13)0.0725 (14)0.1077 (18)0.0176 (11)−0.0386 (13)−0.0152 (13)
C50.0776 (15)0.124 (2)0.0647 (13)0.0054 (14)−0.0168 (11)−0.0265 (13)
C40.0899 (16)0.0852 (15)0.0768 (15)−0.0024 (13)−0.0356 (13)−0.0175 (12)
C170.122 (2)0.0814 (17)0.124 (2)0.0123 (16)−0.0544 (19)0.0124 (16)
C250.293 (5)0.085 (2)0.100 (2)−0.092 (3)0.029 (3)0.0008 (17)
C260.153 (3)0.151 (3)0.0598 (15)−0.021 (2)0.0180 (17)−0.0110 (16)
S1—O11.4160 (15)O6—C261.368 (3)
S1—O21.4182 (15)O6—C221.368 (3)
S1—N11.6809 (16)C8—C91.371 (3)
S1—C11.7485 (18)C8—H80.9300
O4—C151.326 (2)C10—C91.369 (3)
O4—C161.445 (2)C10—C111.377 (3)
N1—C141.411 (2)C10—H100.9300
N1—C71.414 (2)C23—C221.365 (3)
C12—C111.387 (3)C23—H230.9300
C12—C71.392 (3)C22—C211.388 (3)
C12—C131.443 (2)C3—C41.369 (3)
O5—C211.363 (3)C3—H30.9300
O5—C251.365 (3)C11—H110.9300
O3—C151.196 (2)C6—C51.369 (3)
C24—C191.370 (2)C6—H60.9300
C24—C231.379 (3)C9—H90.9300
C24—H240.9300C16—C171.479 (4)
C19—C201.382 (2)C16—H16A0.9700
C19—C181.511 (3)C16—H16B0.9700
C13—C141.353 (3)C5—C41.370 (3)
C13—C151.471 (3)C5—H50.9300
C1—C61.378 (3)C4—H40.9300
C1—C21.378 (3)C17—H17A0.9600
C14—C181.492 (3)C17—H17B0.9600
C2—C31.375 (3)C17—H17C0.9600
C2—H20.9300C25—H25A0.9600
C20—C211.367 (3)C25—H25B0.9600
C20—H200.9300C25—H25C0.9600
C18—H18A0.9700C26—H26A0.9600
C18—H18B0.9700C26—H26B0.9600
C7—C81.388 (2)C26—H26C0.9600
O1—S1—O2120.38 (10)C11—C10—H10119.2
O1—S1—N1106.84 (9)C22—C23—C24120.41 (18)
O2—S1—N1105.33 (9)C22—C23—H23119.8
O1—S1—C1108.93 (9)C24—C23—H23119.8
O2—S1—C1108.65 (9)C23—C22—O6125.20 (19)
N1—S1—C1105.74 (8)C23—C22—C21118.95 (19)
C15—O4—C16116.22 (16)O6—C22—C21115.85 (19)
C14—N1—C7108.32 (15)C4—C3—C2120.0 (2)
C14—N1—S1127.51 (13)C4—C3—H3120.0
C7—N1—S1122.95 (12)C2—C3—H3120.0
C11—C12—C7119.17 (17)C10—C11—C12118.6 (2)
C11—C12—C13133.86 (18)C10—C11—H11120.7
C7—C12—C13106.97 (16)C12—C11—H11120.7
C21—O5—C25117.9 (2)C5—C6—C1118.8 (2)
C19—C24—C23121.22 (18)C5—C6—H6120.6
C19—C24—H24119.4C1—C6—H6120.6
C23—C24—H24119.4O5—C21—C20124.45 (18)
C24—C19—C20118.07 (17)O5—C21—C22115.43 (18)
C24—C19—C18120.49 (17)C20—C21—C22120.12 (19)
C20—C19—C18121.41 (16)C10—C9—C8121.29 (19)
C14—C13—C12109.01 (16)C10—C9—H9119.4
C14—C13—C15124.31 (16)C8—C9—H9119.4
C12—C13—C15126.68 (17)O4—C16—C17107.4 (2)
C6—C1—C2121.12 (18)O4—C16—H16A110.2
C6—C1—S1119.04 (15)C17—C16—H16A110.2
C2—C1—S1119.81 (14)O4—C16—H16B110.2
C13—C14—N1108.19 (15)C17—C16—H16B110.2
C13—C14—C18127.54 (17)H16A—C16—H16B108.5
N1—C14—C18124.23 (17)C6—C5—C4120.5 (2)
C3—C2—C1119.09 (19)C6—C5—H5119.7
C3—C2—H2120.5C4—C5—H5119.7
C1—C2—H2120.5C3—C4—C5120.4 (2)
C21—C20—C19121.20 (17)C3—C4—H4119.8
C21—C20—H20119.4C5—C4—H4119.8
C19—C20—H20119.4C16—C17—H17A109.5
C14—C18—C19115.27 (15)C16—C17—H17B109.5
C14—C18—H18A108.5H17A—C17—H17B109.5
C19—C18—H18A108.5C16—C17—H17C109.5
C14—C18—H18B108.5H17A—C17—H17C109.5
C19—C18—H18B108.5H17B—C17—H17C109.5
H18A—C18—H18B107.5O5—C25—H25A109.5
C8—C7—C12121.86 (18)O5—C25—H25B109.5
C8—C7—N1130.62 (18)H25A—C25—H25B109.5
C12—C7—N1107.51 (15)O5—C25—H25C109.5
C26—O6—C22119.5 (2)H25A—C25—H25C109.5
C9—C8—C7117.6 (2)H25B—C25—H25C109.5
C9—C8—H8121.2O6—C26—H26A109.5
C7—C8—H8121.2O6—C26—H26B109.5
O3—C15—O4122.87 (19)H26A—C26—H26B109.5
O3—C15—C13126.1 (2)O6—C26—H26C109.5
O4—C15—C13111.03 (16)H26A—C26—H26C109.5
C9—C10—C11121.5 (2)H26B—C26—H26C109.5
C9—C10—H10119.2
O1—S1—N1—C1427.85 (17)C14—N1—C7—C8−178.86 (17)
O2—S1—N1—C14156.95 (14)S1—N1—C7—C812.9 (3)
C1—S1—N1—C14−88.10 (15)C14—N1—C7—C12−0.29 (18)
O1—S1—N1—C7−166.29 (13)S1—N1—C7—C12−168.52 (11)
O2—S1—N1—C7−37.18 (15)C12—C7—C8—C90.8 (3)
C1—S1—N1—C777.77 (14)N1—C7—C8—C9179.23 (17)
C23—C24—C19—C201.3 (3)C16—O4—C15—O3−0.6 (3)
C23—C24—C19—C18−176.42 (18)C16—O4—C15—C13−179.67 (16)
C11—C12—C13—C14179.75 (19)C14—C13—C15—O31.4 (3)
C7—C12—C13—C140.14 (19)C12—C13—C15—O3−179.1 (2)
C11—C12—C13—C150.2 (3)C14—C13—C15—O4−179.51 (16)
C7—C12—C13—C15−179.39 (16)C12—C13—C15—O4−0.1 (3)
O1—S1—C1—C6−19.05 (18)C19—C24—C23—C22−0.5 (3)
O2—S1—C1—C6−151.89 (16)C24—C23—C22—O6179.8 (2)
N1—S1—C1—C695.47 (16)C24—C23—C22—C21−1.2 (3)
O1—S1—C1—C2159.04 (15)C26—O6—C22—C23−14.4 (4)
O2—S1—C1—C226.20 (17)C26—O6—C22—C21166.6 (3)
N1—S1—C1—C2−86.45 (16)C1—C2—C3—C40.0 (3)
C12—C13—C14—N1−0.32 (19)C9—C10—C11—C120.2 (3)
C15—C13—C14—N1179.22 (16)C7—C12—C11—C100.3 (3)
C12—C13—C14—C18−178.34 (16)C13—C12—C11—C10−179.24 (19)
C15—C13—C14—C181.2 (3)C2—C1—C6—C50.9 (3)
C7—N1—C14—C130.38 (18)S1—C1—C6—C5178.94 (18)
S1—N1—C14—C13167.92 (12)C25—O5—C21—C20−18.9 (5)
C7—N1—C14—C18178.48 (15)C25—O5—C21—C22161.3 (3)
S1—N1—C14—C18−14.0 (2)C19—C20—C21—O5179.0 (2)
C6—C1—C2—C3−0.7 (3)C19—C20—C21—C22−1.2 (3)
S1—C1—C2—C3−178.79 (15)C23—C22—C21—O5−178.2 (2)
C24—C19—C20—C21−0.5 (3)O6—C22—C21—O50.9 (3)
C18—C19—C20—C21177.3 (2)C23—C22—C21—C202.0 (4)
C13—C14—C18—C19−93.4 (2)O6—C22—C21—C20−178.9 (2)
N1—C14—C18—C1988.8 (2)C11—C10—C9—C8−0.2 (3)
C24—C19—C18—C14−152.33 (18)C7—C8—C9—C10−0.3 (3)
C20—C19—C18—C1430.0 (3)C15—O4—C16—C17−177.62 (19)
C11—C12—C7—C8−0.9 (3)C1—C6—C5—C4−0.3 (4)
C13—C12—C7—C8178.82 (16)C2—C3—C4—C50.6 (4)
C11—C12—C7—N1−179.58 (15)C6—C5—C4—C3−0.4 (4)
C13—C12—C7—N10.10 (18)
D—H···AD—HH···AD···AD—H···A
C6—H6···O10.932.562.911 (3)103
C8—H8···O20.932.312.894 (3)121
C11—H11···O40.932.362.885 (2)115
C18—H18A···O10.972.232.855 (3)122
C18—H18B···O30.972.332.930 (3)119
C25—H25B···O1i0.962.383.231 (3)147
C9—H9···O2ii0.932.583.503 (3)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O10.932.562.911 (3)103
C8—H8⋯O20.932.312.894 (3)121
C11—H11⋯O40.932.362.885 (2)115
C18—H18A⋯O10.972.232.855 (3)122
C18—H18B⋯O30.972.332.930 (3)119
C25—H25B⋯O1i0.962.383.231 (3)147
C9—H9⋯O2ii0.932.583.503 (3)174

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5-chloro-3-(phenylsulfonyl)indole-2-carboxamide: a novel, non-nucleoside inhibitor of HIV-1 reverse transcriptase.

Authors:  T M Williams; T M Ciccarone; S C MacTough; C S Rooney; S K Balani; J H Condra; E A Emini; M E Goldman; W J Greenlee; L R Kauffman
Journal:  J Med Chem       Date:  1993-04-30       Impact factor: 7.446

3.  1-(2-Aminoethyl)-3-methyl-8,9-dihydropyrano[3,2-e]indole: a rotationally restricted phenolic analog of the neurotransmitter serotonin and agonist selective for serotonin (5-HT2-type) receptors.

Authors:  J E Macor; C B Fox; C Johnson; B K Koe; L A Lebel; S H Zorn
Journal:  J Med Chem       Date:  1992-10-02       Impact factor: 7.446

4.  Ethyl 2-(bromo-meth-yl)-5-meth-oxy-1-phenyl-sulfonyl-1H-indole-3-carboxyl-ate.

Authors:  G Chakkaravarthi; Radhakrishnan Sureshbabu; A K Mohanakrishnan; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-20

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  2 in total

1.  Ethyl 2-acetoxy-methyl-1-phenyl-sulfonyl-1H-indole-3-carboxyl-ate.

Authors:  B Gunasekaran; Radhakrishnan Sureshbabu; A K Mohanakrishnan; G Chakkaravarthi; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

2.  (1-Phenyl-sulfonyl-1H-indol-2-yl)(thio-phen-2-yl)methanone.

Authors:  C Kamalakumar; V Dhayalan; A K Mohanakrishnan; V Balasubramanian; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-26
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.