Literature DB >> 21583536

(2-Amino-phen-yl)[(5S)-5-hydr-oxy-3,5-dimethyl-4,5-dihydro-1H-pyrazol-1-yl]methanone.

Mohammad Arfan, M Nawaz Tahir, Rasool Khan, Sumbal Saba, Mohammad S Iqbal.   

Abstract

In the mol-ecule of the title compound, C(12)H(15)N(3)O(2), the pyrazole ring is oriented at a dihedral angle of 49.64 (6)° with respect to the benzene ring. Intra-molecular O-H⋯O, N-H⋯O and C-H⋯O inter-actions result in the formation of a trifurcated hydrogen bond. In the crystal structure, inter-molecular N-H⋯O and O-H⋯N hydrogen bonds link the mol-ecules, forming a network structure.

Entities:  

Year:  2009        PMID: 21583536      PMCID: PMC2977426          DOI: 10.1107/S1600536809026294

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the diverse medical potential of pyrazoles and their modified forms, see: Gürsoy et al. (2000 ▶); Lynch & McClenaghan (2005 ▶). For the biological activity of pyrazolopyrimidines, see: Shaabani et al. (2009 ▶). For synthetic procedures for the preparation of the 4,5-dihydro­pyrrazole nucleus bearing various functionalities on the ring, see: Bahreni et al. (2009 ▶); Kumarasinghe et al. (2009 ▶); Liu et al. (2009 ▶); Lynch & McClenaghan (2005 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C12H15N3O2 M = 233.27 Orthorhombic, a = 23.5705 (7) Å b = 11.3547 (4) Å c = 9.1848 (3) Å V = 2458.18 (14) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.28 × 0.20 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.975, T max = 0.984 14464 measured reflections 3163 independent reflections 2438 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.126 S = 1.04 3163 reflections 165 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809026294/hk2735sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809026294/hk2735Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H15N3O2F(000) = 992
Mr = 233.27Dx = 1.261 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 3163 reflections
a = 23.5705 (7) Åθ = 3.0–28.7°
b = 11.3547 (4) ŵ = 0.09 mm1
c = 9.1848 (3) ÅT = 296 K
V = 2458.18 (14) Å3Prism, yellow
Z = 80.28 × 0.20 × 0.18 mm
Bruker Kappa APEXII CCD diffractometer3163 independent reflections
Radiation source: fine-focus sealed tube2438 reflections with I > 2σ(I)
graphiteRint = 0.022
Detector resolution: 7.40 pixels mm-1θmax = 28.7°, θmin = 3.0°
ω scansh = −31→30
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −15→15
Tmin = 0.975, Tmax = 0.984l = −11→12
14464 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0599P)2 + 0.624P] where P = (Fo2 + 2Fc2)/3
3163 reflections(Δ/σ)max < 0.001
165 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.05818 (4)0.11538 (8)0.14455 (10)0.0359 (3)
O20.00495 (5)0.31866 (9)−0.00220 (13)0.0505 (3)
N10.06263 (5)0.10115 (11)0.45251 (14)0.0379 (4)
N20.09915 (5)0.28723 (10)0.08904 (12)0.0351 (3)
N30.13457 (5)0.38251 (10)0.12462 (13)0.0378 (3)
C10.13799 (5)0.16794 (10)0.28915 (14)0.0299 (3)
C20.11982 (5)0.11841 (10)0.42083 (14)0.0301 (3)
C30.16031 (6)0.09259 (12)0.52774 (16)0.0398 (4)
C40.21706 (6)0.11357 (14)0.50342 (19)0.0500 (5)
C50.23509 (6)0.16073 (16)0.3730 (2)0.0536 (5)
C60.19585 (5)0.18704 (13)0.26614 (17)0.0418 (4)
C70.09593 (5)0.18893 (11)0.17072 (13)0.0294 (3)
C80.06207 (6)0.31127 (13)−0.04089 (15)0.0395 (4)
C90.08216 (7)0.43582 (15)−0.08055 (19)0.0521 (5)
C100.12563 (6)0.46354 (12)0.03036 (16)0.0401 (4)
C110.15629 (9)0.57783 (15)0.0355 (2)0.0616 (6)
C120.07320 (8)0.22171 (17)−0.15852 (18)0.0565 (6)
H1A0.0417 (7)0.0897 (15)0.376 (2)0.0454*
H1B0.0558 (7)0.0465 (16)0.520 (2)0.0454*
H2−0.007810.252210.009980.0606*
H30.148730.060890.616240.047 (4)*
H40.243430.095810.575480.058 (5)*
H50.273470.174740.357090.065 (5)*
H60.208110.217860.177760.046 (4)*
H9A0.050990.49149−0.076060.0624*
H9B0.098340.43743−0.177630.0624*
H11A0.182000.577980.116590.0924*
H11B0.177220.58855−0.053150.0924*
H11C0.129450.640810.046520.0924*
H12A0.056940.24852−0.248440.0848*
H12B0.113380.21170−0.170430.0848*
H12C0.056380.14785−0.131650.0848*
U11U22U33U12U13U23
O10.0378 (5)0.0361 (5)0.0338 (5)−0.0054 (4)−0.0037 (4)−0.0016 (4)
O20.0426 (5)0.0468 (6)0.0621 (7)0.0037 (4)−0.0006 (5)0.0086 (5)
N10.0352 (6)0.0442 (7)0.0342 (6)−0.0015 (5)−0.0001 (4)0.0097 (5)
N20.0418 (6)0.0332 (5)0.0303 (6)−0.0038 (4)−0.0047 (4)0.0028 (5)
N30.0469 (6)0.0309 (5)0.0357 (6)−0.0048 (4)0.0010 (5)−0.0009 (5)
C10.0318 (6)0.0255 (5)0.0325 (7)0.0012 (4)−0.0017 (5)−0.0014 (5)
C20.0334 (6)0.0232 (5)0.0337 (7)0.0022 (4)−0.0022 (5)−0.0013 (5)
C30.0456 (7)0.0372 (7)0.0365 (7)0.0037 (5)−0.0085 (6)0.0047 (6)
C40.0417 (8)0.0535 (9)0.0549 (10)0.0050 (6)−0.0177 (7)0.0016 (7)
C50.0308 (7)0.0637 (10)0.0662 (11)−0.0003 (7)−0.0051 (7)0.0003 (9)
C60.0345 (6)0.0464 (8)0.0444 (8)−0.0019 (5)0.0035 (6)0.0020 (6)
C70.0325 (5)0.0290 (6)0.0266 (6)0.0018 (4)0.0025 (4)−0.0023 (5)
C80.0427 (7)0.0426 (7)0.0331 (7)0.0011 (5)−0.0046 (5)0.0088 (6)
C90.0589 (9)0.0494 (9)0.0479 (9)−0.0038 (7)−0.0038 (7)0.0177 (7)
C100.0480 (7)0.0343 (7)0.0380 (7)0.0001 (5)0.0079 (6)0.0024 (6)
C110.0822 (12)0.0384 (8)0.0642 (11)−0.0139 (8)0.0031 (10)0.0090 (8)
C120.0705 (10)0.0657 (11)0.0334 (8)0.0035 (9)−0.0054 (7)−0.0011 (8)
O1—C71.2438 (15)C8—C91.535 (2)
O2—C81.3950 (18)C8—C121.507 (2)
O2—H20.8200C9—C101.479 (2)
N1—C21.3929 (17)C10—C111.486 (2)
N2—C71.3470 (17)C3—H30.9300
N2—C81.5042 (18)C4—H40.9300
N2—N31.4051 (16)C5—H50.9300
N3—C101.2808 (18)C6—H60.9300
N1—H1B0.892 (18)C9—H9A0.9700
N1—H1A0.868 (18)C9—H9B0.9700
C1—C21.4009 (18)C11—H11A0.9600
C1—C61.3970 (17)C11—H11B0.9600
C1—C71.4909 (17)C11—H11C0.9600
C2—C31.4004 (19)C12—H12A0.9600
C3—C41.377 (2)C12—H12B0.9600
C4—C51.379 (2)C12—H12C0.9600
C5—C61.381 (2)
O1···O22.9527 (14)C11···H9Bvii2.9700
O1···N12.8351 (16)H1A···O12.181 (18)
O1···C123.0548 (19)H1A···C72.541 (18)
O1···N1i2.9882 (15)H1A···O1i2.380 (17)
O1···N1ii3.0277 (16)H1A···H2i2.2700
O2···N1i2.9741 (16)H1B···H32.3700
O2···O12.9527 (14)H1B···O1v2.166 (18)
O1···H1Ai2.380 (17)H2···O12.5200
O1···H12C2.5600H2···C72.9500
O1···H1Bii2.166 (18)H2···H12C2.3200
O1···H1A2.181 (18)H2···N1i2.1700
O1···H22.5200H2···H1Ai2.2700
O2···H12Aiii2.8300H3···H1B2.3700
O2···H9Aiv2.6300H3···C1v3.0600
N1···O12.8351 (16)H4···N3viii2.9200
N1···O1i2.9882 (15)H4···C11viii3.1000
N1···O2i2.9741 (16)H4···H6viii2.5800
N1···O1v3.0277 (16)H6···N22.8100
N3···C62.9499 (18)H6···N32.6000
N1···H2i2.1700H6···C4vi3.0600
N1···H12Cv2.9300H6···H4vi2.5800
N2···H62.8100H9A···O2iv2.6300
N3···H62.6000H9B···H12A2.4400
N3···H4vi2.9200H9B···H12B2.5900
N3···H9Bvii2.8700H9B···N3ix2.8700
C6···N32.9499 (18)H9B···C10ix2.9800
C12···O13.0548 (19)H9B···C11ix2.9700
C1···H3ii3.0600H11B···C6ix3.0700
C2···H11Cvii2.9800H11C···C2ix2.9800
C4···H6viii3.0600H12A···H9B2.4400
C6···H11Bvii3.0700H12A···O2iii2.8300
C7···H22.9500H12B···H9B2.5900
C7···H12C2.9700H12C···O12.5600
C7···H1A2.541 (18)H12C···C72.9700
C10···H9Bvii2.9800H12C···H22.3200
C11···H4vi3.1000H12C···N1ii2.9300
C8—O2—H2109.00N3—C10—C11121.72 (14)
N3—N2—C7122.82 (11)C9—C10—C11123.00 (14)
N3—N2—C8112.96 (10)N3—C10—C9115.26 (13)
C7—N2—C8124.02 (11)C2—C3—H3120.00
N2—N3—C10107.35 (11)C4—C3—H3120.00
C2—N1—H1B114.7 (11)C3—C4—H4120.00
C2—N1—H1A113.7 (12)C5—C4—H4120.00
H1A—N1—H1B110.8 (16)C4—C5—H5120.00
C2—C1—C6119.43 (12)C6—C5—H5120.00
C2—C1—C7119.39 (10)C1—C6—H6120.00
C6—C1—C7120.93 (12)C5—C6—H6120.00
N1—C2—C1122.19 (11)C8—C9—H9A111.00
C1—C2—C3118.76 (11)C8—C9—H9B111.00
N1—C2—C3118.92 (12)C10—C9—H9A111.00
C2—C3—C4120.80 (14)C10—C9—H9B111.00
C3—C4—C5120.49 (14)H9A—C9—H9B109.00
C4—C5—C6119.66 (13)C10—C11—H11A109.00
C1—C6—C5120.84 (14)C10—C11—H11B109.00
N2—C7—C1120.09 (11)C10—C11—H11C109.00
O1—C7—N2119.28 (11)H11A—C11—H11B109.00
O1—C7—C1120.62 (11)H11A—C11—H11C109.00
O2—C8—C9107.62 (12)H11B—C11—H11C109.00
O2—C8—C12113.04 (13)C8—C12—H12A109.00
O2—C8—N2111.69 (11)C8—C12—H12B109.00
N2—C8—C9100.15 (11)C8—C12—H12C109.00
N2—C8—C12110.20 (12)H12A—C12—H12B109.00
C9—C8—C12113.45 (13)H12A—C12—H12C109.00
C8—C9—C10104.26 (13)H12B—C12—H12C109.00
C7—N2—N3—C10−176.72 (12)C7—C1—C2—C3176.17 (11)
C8—N2—N3—C10−1.71 (15)C2—C1—C6—C5−1.8 (2)
N3—N2—C7—O1170.03 (11)C7—C1—C6—C5−176.01 (14)
N3—N2—C7—C1−11.16 (18)C2—C1—C7—O1−40.35 (17)
C8—N2—C7—O1−4.42 (19)C2—C1—C7—N2140.86 (12)
C8—N2—C7—C1174.39 (11)C6—C1—C7—O1133.87 (13)
N3—N2—C8—O2−112.23 (12)C6—C1—C7—N2−44.92 (17)
N3—N2—C8—C91.48 (14)N1—C2—C3—C4−176.93 (13)
N3—N2—C8—C12121.25 (13)C1—C2—C3—C4−1.1 (2)
C7—N2—C8—O262.70 (16)C2—C3—C4—C50.1 (2)
C7—N2—C8—C9176.42 (12)C3—C4—C5—C60.0 (2)
C7—N2—C8—C12−63.81 (17)C4—C5—C6—C10.9 (2)
N2—N3—C10—C91.18 (17)O2—C8—C9—C10116.07 (13)
N2—N3—C10—C11179.96 (13)N2—C8—C9—C10−0.73 (14)
C6—C1—C2—N1177.60 (12)C12—C8—C9—C10−118.11 (14)
C6—C1—C2—C31.86 (18)C8—C9—C10—N3−0.24 (18)
C7—C1—C2—N1−8.09 (18)C8—C9—C10—C11−179.00 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.868 (18)2.181 (18)2.8351 (16)131.9 (15)
N1—H1A···O1i0.868 (18)2.380 (17)2.9882 (15)127.4 (15)
N1—H1B···O1v0.892 (18)2.166 (18)3.0277 (16)162.4 (16)
O2—H2···O10.822.522.9527 (14)114
O2—H2···N1i0.822.172.9741 (16)165
C6—H6···N30.932.602.9499 (18)103
C12—H12C···O10.962.563.0548 (19)112
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O10.868 (18)2.181 (18)2.8351 (16)131.9 (15)
N1—H1A⋯O1i0.868 (18)2.380 (17)2.9882 (15)127.4 (15)
N1—H1B⋯O1ii0.892 (18)2.166 (18)3.0277 (16)162.4 (16)
O2—H2⋯O10.822.522.9527 (14)114
O2—H2⋯N1i0.822.172.9741 (16)165
C6—H6⋯N30.932.602.9499 (18)103
C12—H12C⋯O10.962.563.0548 (19)112

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and preliminary evaluation of new 5-pyrazolinone derivatives as analgesic agents.

Authors:  A Gürsoy; S Demirayak; G Capan; K Erol; K Vural
Journal:  Eur J Med Chem       Date:  2000-03       Impact factor: 6.514

3.  Racemic N-methyl-4-[2-(methyl-sulfan-yl)-pyrimidin-4-yl]-1-(tetra-hydro-furan-3-yl)-1H-pyrazol-5-amine.

Authors:  Zhengyu Liu; Kevin K-C Liu; Arnold L Rheingold; Antonio Dipasquale; Alex Yanovsky
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-22

4.  4-[(2-Benzoyl-4-chlorophenyl)diazenyl]-3-methyl-1-phenyl-1H-pyrazol-5(4H)-one.

Authors:  Zaker Bahreni; Hossein Rahmani; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-11

5.  1-(4-Methoxy-phen-yl)-3-phenyl-1H-pyrazol-5-amine.

Authors:  Isuru R Kumarasinghe; Victor J Hruby; Gary S Nichol
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-30

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.