Literature DB >> 21583507

Ethyl 1-acetyl-1H-indole-3-carboxyl-ate.

Tasneem Siddiquee, Shahid Islam, Dennis Bennett, Matthias Zeller, Mahmun Hossain.   

Abstract

The title compound, C(13)H(13)NO(3), was synthesized by acetyl-ation of ethyl 1H-indole-3-carboxyl-ate. The aromatic ring system of the mol-ecule is essentially planar, but the saturated ethyl group is also located within this plane and the overall r.m.s. deviation from planarity is only 0.034 Å. Pairs of C-H⋯O inter-actions connect mol-ecules into chains along the diagonal of the unit cell. Mol-ecules also form weakly connected dimers via π⋯π stacking inter-actions of the indole rings with centroid-centroid separations of 3.571 (1) Å. C-H⋯π inter-actions between methyl-ene and methyl groups and the indole and benzene ring complete the directional inter-molecular inter-actions found in the crystal structure.

Entities:  

Year:  2009        PMID: 21583507      PMCID: PMC2977149          DOI: 10.1107/S1600536809025379

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of tryptophan derivatives, see: Ma et al. (2001 ▶); Zhou et al. (2006 ▶); Zhao, Smith et al. (2002 ▶); Zhao, Liao & Cook (2002 ▶). For synthetic procedures towards tryptophan-like compounds, see: Ager & Laneman (2004 ▶); Amir-Heidari et al. (2007 ▶); Carlier et al. (2002 ▶); Hengartner et al. (1979 ▶); Moriya et al. (1980 ▶). For the synthesis of 2-acetamido-3-eth­oxy-3-oxopropanoic acid, see: Hellmann et al. (1958 ▶). For NMR data for the title compound, see: Reimann et al. (1990 ▶).

Experimental

Crystal data

C13H13NO3 M = 231.24 Triclinic, a = 7.519 (1) Å b = 8.479 (1) Å c = 10.187 (2) Å α = 97.38 (1)° β = 95.78 (2)° γ = 114.28 (1)° V = 578.58 (15) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.51 × 0.41 × 0.20 mm

Data collection

Siemens P4 diffractometer Absorption correction: multi-scan [XSCANS (Siemens, 1996 ▶) and XPREP (Siemens, 1994 ▶)] T min = 0.823, T max = 0.981 2536 measured reflections 2027 independent reflections 1696 reflections with I > 2σ(I) R int = 0.019 3 standard reflections every 97 reflections intensity decay: <1%

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.120 S = 1.09 2027 reflections 155 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.18 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: XPREP (Siemens 1994 ▶) and SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809025379/bh2233sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809025379/bh2233Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13NO3Z = 2
Mr = 231.24F(000) = 244
Triclinic, P1Dx = 1.327 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.519 (1) ÅCell parameters from 23 reflections
b = 8.479 (1) Åθ = 3.7–11.4°
c = 10.187 (2) ŵ = 0.10 mm1
α = 97.38 (1)°T = 296 K
β = 95.78 (2)°Block, colourless
γ = 114.28 (1)°0.51 × 0.41 × 0.20 mm
V = 578.58 (15) Å3
Siemens P4 diffractometer1696 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.019
graphiteθmax = 25.0°, θmin = 2.1°
2θ/ω scansh = −8→1
Absorption correction: multi-scan [XSCANS (Siemens 1996) and XPREP (Siemens, 1994)]k = −9→9
Tmin = 0.823, Tmax = 0.981l = −12→12
2536 measured reflections3 standard reflections every 97 reflections
2027 independent reflections intensity decay: <1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.120w = 1/[σ2(Fo2) + (0.0647P)2 + 0.0738P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.001
2027 reflectionsΔρmax = 0.17 e Å3
155 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXTL (Bruker, 2003; Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.103 (12)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
C10.3179 (2)0.9158 (2)0.76860 (15)0.0474 (4)
C20.3276 (2)0.8319 (2)0.64495 (16)0.0560 (4)
H20.39260.89520.58260.067*
C30.2364 (3)0.6502 (2)0.61896 (18)0.0641 (5)
H30.24020.58980.53710.077*
C40.1394 (3)0.5554 (2)0.71141 (19)0.0658 (5)
H40.08040.43300.69070.079*
C50.1286 (3)0.6392 (2)0.83389 (17)0.0572 (4)
H50.06290.57470.89550.069*
C60.2186 (2)0.8227 (2)0.86285 (15)0.0477 (4)
C70.2359 (2)0.9517 (2)0.97738 (15)0.0477 (4)
C80.3421 (2)1.1130 (2)0.95024 (15)0.0491 (4)
H80.37471.21891.00770.059*
C90.1539 (2)0.9133 (2)1.10037 (16)0.0526 (4)
C100.5038 (3)1.2371 (2)0.76197 (16)0.0563 (4)
C110.5648 (3)1.4194 (3)0.8383 (2)0.0756 (6)
H11A0.63921.43360.92480.113*
H11B0.44911.43770.84970.113*
H11C0.64521.50370.78940.113*
C120.1351 (3)1.0333 (3)1.31867 (17)0.0613 (5)
H12A0.19500.96831.36340.074*
H12B−0.00760.96671.30450.074*
C130.1950 (3)1.2107 (3)1.40273 (18)0.0724 (5)
H13A0.15081.19701.48750.109*
H13B0.13611.27431.35720.109*
H13C0.33661.27471.41750.109*
N10.39555 (19)1.09788 (17)0.82406 (12)0.0489 (4)
O10.0559 (3)0.76795 (18)1.11828 (14)0.0845 (5)
O20.20161 (17)1.05915 (15)1.19112 (11)0.0559 (3)
O30.5434 (2)1.20764 (19)0.65295 (13)0.0814 (5)
U11U22U33U12U13U23
C10.0485 (8)0.0506 (9)0.0420 (8)0.0226 (7)0.0046 (6)0.0028 (6)
C20.0594 (10)0.0612 (10)0.0452 (9)0.0262 (8)0.0100 (7)0.0006 (7)
C30.0707 (11)0.0617 (11)0.0531 (10)0.0282 (9)0.0083 (8)−0.0092 (8)
C40.0744 (11)0.0493 (10)0.0660 (11)0.0245 (9)0.0072 (9)−0.0049 (8)
C50.0631 (10)0.0494 (9)0.0552 (10)0.0216 (8)0.0084 (8)0.0070 (7)
C60.0492 (8)0.0497 (8)0.0437 (8)0.0231 (7)0.0043 (6)0.0036 (7)
C70.0521 (8)0.0502 (9)0.0419 (8)0.0239 (7)0.0077 (6)0.0062 (7)
C80.0569 (9)0.0503 (9)0.0405 (8)0.0245 (7)0.0102 (6)0.0032 (6)
C90.0617 (9)0.0541 (10)0.0467 (9)0.0283 (8)0.0122 (7)0.0108 (7)
C100.0656 (10)0.0570 (10)0.0478 (9)0.0254 (8)0.0155 (7)0.0131 (7)
C110.0980 (15)0.0525 (11)0.0726 (12)0.0247 (10)0.0284 (11)0.0146 (9)
C120.0718 (11)0.0789 (12)0.0442 (9)0.0395 (10)0.0208 (8)0.0160 (8)
C130.0812 (13)0.0925 (14)0.0491 (10)0.0451 (11)0.0156 (9)0.0023 (9)
N10.0562 (8)0.0484 (7)0.0406 (7)0.0215 (6)0.0105 (5)0.0044 (5)
O10.1286 (12)0.0546 (8)0.0692 (9)0.0304 (8)0.0424 (8)0.0197 (6)
O20.0660 (7)0.0586 (7)0.0430 (6)0.0256 (6)0.0172 (5)0.0069 (5)
O30.1158 (11)0.0731 (9)0.0556 (8)0.0346 (8)0.0377 (7)0.0162 (7)
C1—C21.389 (2)C9—O11.197 (2)
C1—C61.399 (2)C9—O21.3367 (19)
C1—N11.4186 (19)C10—O31.201 (2)
C2—C31.379 (2)C10—N11.400 (2)
C2—H20.9300C10—C111.497 (3)
C3—C41.384 (3)C11—H11A0.9600
C3—H30.9300C11—H11B0.9600
C4—C51.381 (2)C11—H11C0.9600
C4—H40.9300C12—O21.449 (2)
C5—C61.393 (2)C12—C131.494 (3)
C5—H50.9300C12—H12A0.9700
C6—C71.449 (2)C12—H12B0.9700
C7—C81.352 (2)C13—H13A0.9600
C7—C91.467 (2)C13—H13B0.9600
C8—N11.391 (2)C13—H13C0.9600
C8—H80.9300
C2—C1—C6122.32 (15)O2—C9—C7112.43 (14)
C2—C1—N1130.20 (15)O3—C10—N1120.26 (16)
C6—C1—N1107.48 (13)O3—C10—C11123.11 (16)
C3—C2—C1116.89 (17)N1—C10—C11116.63 (15)
C3—C2—H2121.6C10—C11—H11A109.5
C1—C2—H2121.6C10—C11—H11B109.5
C2—C3—C4121.75 (17)H11A—C11—H11B109.5
C2—C3—H3119.1C10—C11—H11C109.5
C4—C3—H3119.1H11A—C11—H11C109.5
C5—C4—C3121.27 (17)H11B—C11—H11C109.5
C5—C4—H4119.4O2—C12—C13107.88 (15)
C3—C4—H4119.4O2—C12—H12A110.1
C4—C5—C6118.33 (17)C13—C12—H12A110.1
C4—C5—H5120.8O2—C12—H12B110.1
C6—C5—H5120.8C13—C12—H12B110.1
C5—C6—C1119.44 (14)H12A—C12—H12B108.4
C5—C6—C7133.47 (15)C12—C13—H13A109.5
C1—C6—C7107.10 (14)C12—C13—H13B109.5
C8—C7—C6107.50 (14)H13A—C13—H13B109.5
C8—C7—C9126.52 (15)C12—C13—H13C109.5
C6—C7—C9125.98 (15)H13A—C13—H13C109.5
C7—C8—N1110.33 (14)H13B—C13—H13C109.5
C7—C8—H8124.8C8—N1—C10126.27 (14)
N1—C8—H8124.8C8—N1—C1107.60 (13)
O1—C9—O2123.51 (15)C10—N1—C1126.12 (13)
O1—C9—C7124.06 (16)C9—O2—C12116.25 (13)
C6—C1—C2—C3−0.9 (2)C8—C7—C9—O1177.82 (17)
N1—C1—C2—C3−179.95 (15)C6—C7—C9—O1−2.6 (3)
C1—C2—C3—C40.1 (3)C8—C7—C9—O2−2.5 (2)
C2—C3—C4—C50.5 (3)C6—C7—C9—O2177.09 (13)
C3—C4—C5—C6−0.2 (3)C7—C8—N1—C10179.14 (15)
C4—C5—C6—C1−0.6 (2)C7—C8—N1—C10.04 (17)
C4—C5—C6—C7179.54 (17)O3—C10—N1—C8179.02 (16)
C2—C1—C6—C51.2 (2)C11—C10—N1—C8−1.0 (3)
N1—C1—C6—C5−179.57 (13)O3—C10—N1—C1−2.1 (3)
C2—C1—C6—C7−178.95 (14)C11—C10—N1—C1177.96 (15)
N1—C1—C6—C70.31 (16)C2—C1—N1—C8178.95 (16)
C5—C6—C7—C8179.58 (17)C6—C1—N1—C8−0.23 (16)
C1—C6—C7—C8−0.29 (17)C2—C1—N1—C10−0.1 (3)
C5—C6—C7—C90.0 (3)C6—C1—N1—C10−179.32 (15)
C1—C6—C7—C9−179.90 (14)O1—C9—O2—C122.7 (2)
C6—C7—C8—N10.15 (18)C7—C9—O2—C12−177.03 (13)
C9—C7—C8—N1179.76 (14)C13—C12—O2—C9−177.54 (14)
D—H···AD—HH···AD···AD—H···A
C2—H2···O3i0.932.613.296 (2)131
C5—H5···O1ii0.932.643.273 (2)125
C12—H12B···Cg1iii0.962.953.618 (3)127
C13—H13B···Cg2iii0.962.783.587 (3)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O3i0.932.613.296 (2)131
C5—H5⋯O1ii0.932.643.273 (2)125
C12—H12BCg1iii0.962.953.618 (3)127
C13—H13BCg2iii0.962.783.587 (3)142

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the N1,C1,C6–C8 pyrrole ring and Cg2 is the centroid of the C1–C6 phenyl ring.

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Efficient asymmetric synthesis of biologically important tryptophan analogues via a palladium-mediated heteroannulation reaction.

Authors:  C Ma; X Liu; X Li; J Flippen-Anderson; S Yu; J M Cook
Journal:  J Org Chem       Date:  2001-06-29       Impact factor: 4.354

3.  Enantiospecific, stereospecific total synthesis of (+)-majvinine, (+)-10-methoxyaffinisine, and (+)-N(a)-methylsarpagine as well as the total synthesis of the Alstonia bisindole macralstonidine.

Authors:  Shuo Zhao; Xuebin Liao; James M Cook
Journal:  Org Lett       Date:  2002-03-07       Impact factor: 6.005

4.  General approach for the synthesis of 12-methoxy-substituted sarpagine indole alkaloids including (-)-12-methoxy-N(b)-methylvoachalotine, (+)-12-methoxy-N(a)-methylvellosimine, (+)-12-methoxyaffinisine, and (-)-fuchsiaefoline.

Authors:  Hao Zhou; Xuebin Liao; Wenyuan Yin; Jun Ma; James M Cook
Journal:  J Org Chem       Date:  2006-01-06       Impact factor: 4.354

5.  Biological activity of the tryprostatins and their diastereomers on human carcinoma cell lines.

Authors:  Shuo Zhao; Kirsten S Smith; Amy Morin Deveau; Christine M Dieckhaus; Michael A Johnson; Timothy L Macdonald; James M Cook
Journal:  J Med Chem       Date:  2002-04-11       Impact factor: 7.446

6.  Catalytic asymmetric synthesis of protected tryptophan regioisomers.

Authors:  Paul R Carlier; Polo C-H Lam; Dawn M Wong
Journal:  J Org Chem       Date:  2002-08-23       Impact factor: 4.354

7.  Stereochemical course of tryptophan dehydrogenation during biosynthesis of the calcium-dependent lipopeptide antibiotics.

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Journal:  Org Lett       Date:  2007-03-14       Impact factor: 6.005

  7 in total
  2 in total

1.  Methyl 3-(1H-indole-3-carboxamido)propionate hemihydrate.

Authors:  Gang Huang; Xing Yan Xu; Xiang Chao Zeng; Le Zheng; Kai Ping Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-26

2.  Methyl 3-[(1-butyl-1H-indol-3-yl)carbonyl-amino]propionate.

Authors:  Gang Huang; Xing Yan Xu; Xiang Chao Zeng; Gui Hong Tang; Dong Dong Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08
  2 in total

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