| Literature DB >> 21583507 |
Tasneem Siddiquee, Shahid Islam, Dennis Bennett, Matthias Zeller, Mahmun Hossain.
Abstract
The title compound, C(13)H(13)NO(3), was synthesized by acetyl-ation of ethyl 1H-indole-3-carboxyl-ate. The aromatic ring system of the mol-ecule is essentially planar, but the saturated ethyl group is also located within this plane and the overall r.m.s. deviation from planarity is only 0.034 Å. Pairs of C-H⋯O inter-actions connect mol-ecules into chains along the diagonal of the unit cell. Mol-ecules also form weakly connected dimers via π⋯π stacking inter-actions of the indole rings with centroid-centroid separations of 3.571 (1) Å. C-H⋯π inter-actions between methyl-ene and methyl groups and the indole and benzene ring complete the directional inter-molecular inter-actions found in the crystal structure.Entities:
Year: 2009 PMID: 21583507 PMCID: PMC2977149 DOI: 10.1107/S1600536809025379
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H13NO3 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 23 reflections | |
| θ = 3.7–11.4° | |
| µ = 0.10 mm−1 | |
| α = 97.38 (1)° | |
| β = 95.78 (2)° | Block, colourless |
| γ = 114.28 (1)° | 0.51 × 0.41 × 0.20 mm |
| Siemens P4 diffractometer | 1696 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.0°, θmin = 2.1° |
| 2θ/ω scans | |
| Absorption correction: multi-scan [ | |
| 2536 measured reflections | 3 standard reflections every 97 reflections |
| 2027 independent reflections | intensity decay: <1% |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2027 reflections | Δρmax = 0.17 e Å−3 |
| 155 parameters | Δρmin = −0.18 e Å−3 |
| 0 restraints | Extinction correction: |
| 0 constraints | Extinction coefficient: 0.103 (12) |
| Primary atom site location: structure-invariant direct methods |
| C1 | 0.3179 (2) | 0.9158 (2) | 0.76860 (15) | 0.0474 (4) | |
| C2 | 0.3276 (2) | 0.8319 (2) | 0.64495 (16) | 0.0560 (4) | |
| H2 | 0.3926 | 0.8952 | 0.5826 | 0.067* | |
| C3 | 0.2364 (3) | 0.6502 (2) | 0.61896 (18) | 0.0641 (5) | |
| H3 | 0.2402 | 0.5898 | 0.5371 | 0.077* | |
| C4 | 0.1394 (3) | 0.5554 (2) | 0.71141 (19) | 0.0658 (5) | |
| H4 | 0.0804 | 0.4330 | 0.6907 | 0.079* | |
| C5 | 0.1286 (3) | 0.6392 (2) | 0.83389 (17) | 0.0572 (4) | |
| H5 | 0.0629 | 0.5747 | 0.8955 | 0.069* | |
| C6 | 0.2186 (2) | 0.8227 (2) | 0.86285 (15) | 0.0477 (4) | |
| C7 | 0.2359 (2) | 0.9517 (2) | 0.97738 (15) | 0.0477 (4) | |
| C8 | 0.3421 (2) | 1.1130 (2) | 0.95024 (15) | 0.0491 (4) | |
| H8 | 0.3747 | 1.2189 | 1.0077 | 0.059* | |
| C9 | 0.1539 (2) | 0.9133 (2) | 1.10037 (16) | 0.0526 (4) | |
| C10 | 0.5038 (3) | 1.2371 (2) | 0.76197 (16) | 0.0563 (4) | |
| C11 | 0.5648 (3) | 1.4194 (3) | 0.8383 (2) | 0.0756 (6) | |
| H11A | 0.6392 | 1.4336 | 0.9248 | 0.113* | |
| H11B | 0.4491 | 1.4377 | 0.8497 | 0.113* | |
| H11C | 0.6452 | 1.5037 | 0.7894 | 0.113* | |
| C12 | 0.1351 (3) | 1.0333 (3) | 1.31867 (17) | 0.0613 (5) | |
| H12A | 0.1950 | 0.9683 | 1.3634 | 0.074* | |
| H12B | −0.0076 | 0.9667 | 1.3045 | 0.074* | |
| C13 | 0.1950 (3) | 1.2107 (3) | 1.40273 (18) | 0.0724 (5) | |
| H13A | 0.1508 | 1.1970 | 1.4875 | 0.109* | |
| H13B | 0.1361 | 1.2743 | 1.3572 | 0.109* | |
| H13C | 0.3366 | 1.2747 | 1.4175 | 0.109* | |
| N1 | 0.39555 (19) | 1.09788 (17) | 0.82406 (12) | 0.0489 (4) | |
| O1 | 0.0559 (3) | 0.76795 (18) | 1.11828 (14) | 0.0845 (5) | |
| O2 | 0.20161 (17) | 1.05915 (15) | 1.19112 (11) | 0.0559 (3) | |
| O3 | 0.5434 (2) | 1.20764 (19) | 0.65295 (13) | 0.0814 (5) |
| C1 | 0.0485 (8) | 0.0506 (9) | 0.0420 (8) | 0.0226 (7) | 0.0046 (6) | 0.0028 (6) |
| C2 | 0.0594 (10) | 0.0612 (10) | 0.0452 (9) | 0.0262 (8) | 0.0100 (7) | 0.0006 (7) |
| C3 | 0.0707 (11) | 0.0617 (11) | 0.0531 (10) | 0.0282 (9) | 0.0083 (8) | −0.0092 (8) |
| C4 | 0.0744 (11) | 0.0493 (10) | 0.0660 (11) | 0.0245 (9) | 0.0072 (9) | −0.0049 (8) |
| C5 | 0.0631 (10) | 0.0494 (9) | 0.0552 (10) | 0.0216 (8) | 0.0084 (8) | 0.0070 (7) |
| C6 | 0.0492 (8) | 0.0497 (8) | 0.0437 (8) | 0.0231 (7) | 0.0043 (6) | 0.0036 (7) |
| C7 | 0.0521 (8) | 0.0502 (9) | 0.0419 (8) | 0.0239 (7) | 0.0077 (6) | 0.0062 (7) |
| C8 | 0.0569 (9) | 0.0503 (9) | 0.0405 (8) | 0.0245 (7) | 0.0102 (6) | 0.0032 (6) |
| C9 | 0.0617 (9) | 0.0541 (10) | 0.0467 (9) | 0.0283 (8) | 0.0122 (7) | 0.0108 (7) |
| C10 | 0.0656 (10) | 0.0570 (10) | 0.0478 (9) | 0.0254 (8) | 0.0155 (7) | 0.0131 (7) |
| C11 | 0.0980 (15) | 0.0525 (11) | 0.0726 (12) | 0.0247 (10) | 0.0284 (11) | 0.0146 (9) |
| C12 | 0.0718 (11) | 0.0789 (12) | 0.0442 (9) | 0.0395 (10) | 0.0208 (8) | 0.0160 (8) |
| C13 | 0.0812 (13) | 0.0925 (14) | 0.0491 (10) | 0.0451 (11) | 0.0156 (9) | 0.0023 (9) |
| N1 | 0.0562 (8) | 0.0484 (7) | 0.0406 (7) | 0.0215 (6) | 0.0105 (5) | 0.0044 (5) |
| O1 | 0.1286 (12) | 0.0546 (8) | 0.0692 (9) | 0.0304 (8) | 0.0424 (8) | 0.0197 (6) |
| O2 | 0.0660 (7) | 0.0586 (7) | 0.0430 (6) | 0.0256 (6) | 0.0172 (5) | 0.0069 (5) |
| O3 | 0.1158 (11) | 0.0731 (9) | 0.0556 (8) | 0.0346 (8) | 0.0377 (7) | 0.0162 (7) |
| C1—C2 | 1.389 (2) | C9—O1 | 1.197 (2) |
| C1—C6 | 1.399 (2) | C9—O2 | 1.3367 (19) |
| C1—N1 | 1.4186 (19) | C10—O3 | 1.201 (2) |
| C2—C3 | 1.379 (2) | C10—N1 | 1.400 (2) |
| C2—H2 | 0.9300 | C10—C11 | 1.497 (3) |
| C3—C4 | 1.384 (3) | C11—H11A | 0.9600 |
| C3—H3 | 0.9300 | C11—H11B | 0.9600 |
| C4—C5 | 1.381 (2) | C11—H11C | 0.9600 |
| C4—H4 | 0.9300 | C12—O2 | 1.449 (2) |
| C5—C6 | 1.393 (2) | C12—C13 | 1.494 (3) |
| C5—H5 | 0.9300 | C12—H12A | 0.9700 |
| C6—C7 | 1.449 (2) | C12—H12B | 0.9700 |
| C7—C8 | 1.352 (2) | C13—H13A | 0.9600 |
| C7—C9 | 1.467 (2) | C13—H13B | 0.9600 |
| C8—N1 | 1.391 (2) | C13—H13C | 0.9600 |
| C8—H8 | 0.9300 | ||
| C2—C1—C6 | 122.32 (15) | O2—C9—C7 | 112.43 (14) |
| C2—C1—N1 | 130.20 (15) | O3—C10—N1 | 120.26 (16) |
| C6—C1—N1 | 107.48 (13) | O3—C10—C11 | 123.11 (16) |
| C3—C2—C1 | 116.89 (17) | N1—C10—C11 | 116.63 (15) |
| C3—C2—H2 | 121.6 | C10—C11—H11A | 109.5 |
| C1—C2—H2 | 121.6 | C10—C11—H11B | 109.5 |
| C2—C3—C4 | 121.75 (17) | H11A—C11—H11B | 109.5 |
| C2—C3—H3 | 119.1 | C10—C11—H11C | 109.5 |
| C4—C3—H3 | 119.1 | H11A—C11—H11C | 109.5 |
| C5—C4—C3 | 121.27 (17) | H11B—C11—H11C | 109.5 |
| C5—C4—H4 | 119.4 | O2—C12—C13 | 107.88 (15) |
| C3—C4—H4 | 119.4 | O2—C12—H12A | 110.1 |
| C4—C5—C6 | 118.33 (17) | C13—C12—H12A | 110.1 |
| C4—C5—H5 | 120.8 | O2—C12—H12B | 110.1 |
| C6—C5—H5 | 120.8 | C13—C12—H12B | 110.1 |
| C5—C6—C1 | 119.44 (14) | H12A—C12—H12B | 108.4 |
| C5—C6—C7 | 133.47 (15) | C12—C13—H13A | 109.5 |
| C1—C6—C7 | 107.10 (14) | C12—C13—H13B | 109.5 |
| C8—C7—C6 | 107.50 (14) | H13A—C13—H13B | 109.5 |
| C8—C7—C9 | 126.52 (15) | C12—C13—H13C | 109.5 |
| C6—C7—C9 | 125.98 (15) | H13A—C13—H13C | 109.5 |
| C7—C8—N1 | 110.33 (14) | H13B—C13—H13C | 109.5 |
| C7—C8—H8 | 124.8 | C8—N1—C10 | 126.27 (14) |
| N1—C8—H8 | 124.8 | C8—N1—C1 | 107.60 (13) |
| O1—C9—O2 | 123.51 (15) | C10—N1—C1 | 126.12 (13) |
| O1—C9—C7 | 124.06 (16) | C9—O2—C12 | 116.25 (13) |
| C6—C1—C2—C3 | −0.9 (2) | C8—C7—C9—O1 | 177.82 (17) |
| N1—C1—C2—C3 | −179.95 (15) | C6—C7—C9—O1 | −2.6 (3) |
| C1—C2—C3—C4 | 0.1 (3) | C8—C7—C9—O2 | −2.5 (2) |
| C2—C3—C4—C5 | 0.5 (3) | C6—C7—C9—O2 | 177.09 (13) |
| C3—C4—C5—C6 | −0.2 (3) | C7—C8—N1—C10 | 179.14 (15) |
| C4—C5—C6—C1 | −0.6 (2) | C7—C8—N1—C1 | 0.04 (17) |
| C4—C5—C6—C7 | 179.54 (17) | O3—C10—N1—C8 | 179.02 (16) |
| C2—C1—C6—C5 | 1.2 (2) | C11—C10—N1—C8 | −1.0 (3) |
| N1—C1—C6—C5 | −179.57 (13) | O3—C10—N1—C1 | −2.1 (3) |
| C2—C1—C6—C7 | −178.95 (14) | C11—C10—N1—C1 | 177.96 (15) |
| N1—C1—C6—C7 | 0.31 (16) | C2—C1—N1—C8 | 178.95 (16) |
| C5—C6—C7—C8 | 179.58 (17) | C6—C1—N1—C8 | −0.23 (16) |
| C1—C6—C7—C8 | −0.29 (17) | C2—C1—N1—C10 | −0.1 (3) |
| C5—C6—C7—C9 | 0.0 (3) | C6—C1—N1—C10 | −179.32 (15) |
| C1—C6—C7—C9 | −179.90 (14) | O1—C9—O2—C12 | 2.7 (2) |
| C6—C7—C8—N1 | 0.15 (18) | C7—C9—O2—C12 | −177.03 (13) |
| C9—C7—C8—N1 | 179.76 (14) | C13—C12—O2—C9 | −177.54 (14) |
| H··· | ||||
| C2—H2···O3i | 0.93 | 2.61 | 3.296 (2) | 131 |
| C5—H5···O1ii | 0.93 | 2.64 | 3.273 (2) | 125 |
| C12—H12B···Cg1iii | 0.96 | 2.95 | 3.618 (3) | 127 |
| C13—H13B···Cg2iii | 0.96 | 2.78 | 3.587 (3) | 142 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C2—H2⋯O3i | 0.93 | 2.61 | 3.296 (2) | 131 |
| C5—H5⋯O1ii | 0.93 | 2.64 | 3.273 (2) | 125 |
| C12—H12 | 0.96 | 2.95 | 3.618 (3) | 127 |
| C13—H13 | 0.96 | 2.78 | 3.587 (3) | 142 |
Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the N1,C1,C6–C8 pyrrole ring and Cg2 is the centroid of the C1–C6 phenyl ring.