Literature DB >> 21577487

Methyl 3-[(1-butyl-1H-indol-3-yl)carbonyl-amino]propionate.

Gang Huang1, Xing Yan Xu, Xiang Chao Zeng, Gui Hong Tang, Dong Dong Li.   

Abstract

In the title mol-ecule, C(17)H(22)N(2)O(3), the mean plane of the terminal (C=O)OMe fragment and the indole plane form a dihedral angle of 78.94 (3)°. Inter-molecular N-H⋯O hydrogen bonds link the mol-ecules into chains extended along the c axis. The crystal packing exhibits π-π inter-actions, indicated by the short distance of 3.472 (2) Å between the centroids of the five-membered heterocycles of neighbouring mol-ecules.

Entities:  

Year:  2009        PMID: 21577487      PMCID: PMC2969888          DOI: 10.1107/S1600536809029973

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the bioactivity of indole derivatives, see: Fabio et al. (2007 ▶); Sharma et al. (2004 ▶). For related structures, see: Zeng et al. (2005 ▶); Siddiquee et al. (2009 ▶).

Experimental

Crystal data

C17H22N2O3 M = 302.37 Monoclinic, a = 14.144 (3) Å b = 12.685 (3) Å c = 9.198 (2) Å β = 107.151 (4)° V = 1576.8 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 0.46 × 0.42 × 0.17 mm

Data collection

Bruker SMART 1K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.961, T max = 0.985 7760 measured reflections 3093 independent reflections 2169 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.135 S = 1.05 3093 reflections 201 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker,1999 ▶); cell refinement: SAINT-Plus (Bruker, 1999 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809029973/cv2594sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029973/cv2594Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H22N2O3Dx = 1.274 Mg m3
Mr = 302.37Melting point: 367 K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 14.144 (3) ÅCell parameters from 2799 reflections
b = 12.685 (3) Åθ = 2.8–26.9°
c = 9.198 (2) ŵ = 0.09 mm1
β = 107.151 (4)°T = 173 K
V = 1576.8 (6) Å3Plate, colourless
Z = 40.46 × 0.42 × 0.17 mm
F(000) = 648
Bruker SMART 1K CCD area-detector diffractometer3093 independent reflections
Radiation source: fine-focus sealed tube2169 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 26.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −17→9
Tmin = 0.961, Tmax = 0.985k = −15→13
7760 measured reflectionsl = −11→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0677P)2 + 0.3821P] where P = (Fo2 + 2Fc2)/3
3093 reflections(Δ/σ)max = 0.001
201 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.32207 (9)0.17769 (11)1.18054 (15)0.0326 (3)
N20.27815 (11)0.22657 (13)0.93470 (18)0.0286 (4)
H20.29440.23010.84950.034*
N10.56995 (11)0.12769 (12)0.95991 (17)0.0271 (4)
O20.07347 (10)0.00166 (12)0.83159 (18)0.0431 (4)
C10.47775 (13)0.16910 (14)0.9284 (2)0.0255 (4)
H10.44190.19870.83310.031*
C20.44315 (13)0.16250 (14)1.0527 (2)0.0251 (4)
O30.06776 (13)0.13614 (14)0.67382 (18)0.0545 (5)
C30.52016 (13)0.11227 (14)1.1707 (2)0.0259 (4)
C90.34451 (13)0.19061 (15)1.0605 (2)0.0258 (4)
C40.53054 (14)0.07969 (15)1.3199 (2)0.0300 (4)
H40.47970.09311.36590.036*
C120.08303 (14)0.10345 (18)0.8007 (2)0.0343 (5)
C140.62646 (14)0.11611 (16)0.8515 (2)0.0292 (4)
H14A0.58220.13020.74790.035*
H14B0.64940.04220.85390.035*
C70.68374 (14)0.03955 (15)1.1879 (2)0.0312 (5)
H70.73540.02661.14360.037*
C80.59785 (13)0.09149 (14)1.1080 (2)0.0255 (4)
C110.11220 (14)0.16838 (17)0.9426 (2)0.0328 (5)
H11A0.14600.12251.02940.039*
H11B0.05170.19650.96190.039*
C100.18006 (13)0.25988 (16)0.9350 (2)0.0310 (5)
H10A0.14960.30120.84160.037*
H10B0.18620.30681.02340.037*
C150.71526 (14)0.18848 (16)0.8815 (2)0.0300 (5)
H15A0.76270.17080.98130.036*
H15B0.69360.26230.88620.036*
C160.76656 (15)0.17862 (17)0.7580 (2)0.0364 (5)
H16A0.71640.18700.65760.044*
H16B0.81460.23710.76980.044*
C50.61526 (15)0.02801 (16)1.3987 (2)0.0345 (5)
H50.62270.00551.49990.041*
C60.69128 (15)0.00763 (16)1.3333 (2)0.0353 (5)
H60.7489−0.02881.39060.042*
C170.82035 (16)0.07542 (19)0.7591 (3)0.0455 (6)
H17A0.87220.06760.85640.068*
H17B0.85040.07490.67570.068*
H17C0.77340.01690.74610.068*
C130.04133 (18)−0.0678 (2)0.7031 (3)0.0564 (7)
H13A−0.0213−0.04210.63440.085*
H13B0.0319−0.13890.73820.085*
H13C0.0915−0.06980.64890.085*
U11U22U33U12U13U23
O10.0298 (7)0.0442 (9)0.0277 (7)−0.0011 (6)0.0144 (6)−0.0037 (6)
N20.0250 (8)0.0355 (9)0.0278 (9)0.0011 (7)0.0117 (7)−0.0009 (7)
N10.0256 (8)0.0307 (9)0.0281 (9)0.0003 (7)0.0124 (7)−0.0005 (7)
O20.0347 (8)0.0382 (9)0.0536 (10)−0.0014 (7)0.0088 (7)−0.0073 (7)
C10.0233 (9)0.0261 (10)0.0274 (10)0.0004 (8)0.0078 (8)0.0002 (8)
C20.0251 (9)0.0247 (10)0.0266 (10)−0.0027 (8)0.0095 (8)−0.0022 (8)
O30.0636 (11)0.0652 (12)0.0348 (9)−0.0229 (9)0.0148 (8)−0.0042 (8)
C30.0255 (10)0.0233 (9)0.0301 (10)−0.0034 (8)0.0100 (8)−0.0026 (8)
C90.0269 (10)0.0252 (10)0.0272 (10)−0.0047 (8)0.0107 (8)−0.0061 (8)
C40.0307 (10)0.0299 (10)0.0312 (10)−0.0062 (8)0.0122 (8)−0.0014 (8)
C120.0216 (10)0.0450 (13)0.0387 (12)−0.0051 (9)0.0128 (9)−0.0032 (10)
C140.0282 (10)0.0329 (11)0.0307 (11)0.0002 (8)0.0152 (8)−0.0041 (8)
C70.0273 (10)0.0287 (10)0.0385 (12)0.0001 (8)0.0109 (9)−0.0005 (9)
C80.0254 (10)0.0221 (9)0.0297 (10)−0.0039 (7)0.0089 (8)−0.0034 (8)
C110.0255 (10)0.0413 (12)0.0341 (11)−0.0018 (9)0.0129 (8)−0.0013 (9)
C100.0246 (10)0.0323 (11)0.0377 (11)0.0024 (8)0.0116 (8)−0.0032 (9)
C150.0303 (10)0.0304 (10)0.0333 (11)−0.0004 (8)0.0158 (8)−0.0008 (8)
C160.0354 (11)0.0419 (12)0.0371 (12)−0.0047 (9)0.0187 (9)0.0014 (9)
C50.0388 (12)0.0337 (11)0.0293 (11)−0.0044 (9)0.0074 (9)0.0054 (9)
C60.0321 (11)0.0300 (11)0.0401 (12)0.0014 (9)0.0049 (9)0.0055 (9)
C170.0348 (12)0.0590 (16)0.0483 (14)0.0078 (11)0.0211 (11)−0.0015 (11)
C130.0407 (13)0.0510 (15)0.0742 (18)−0.0051 (11)0.0118 (12)−0.0255 (13)
O1—C91.247 (2)C7—C81.387 (3)
N2—C91.337 (2)C7—H70.9500
N2—C101.451 (2)C11—C101.521 (3)
N2—H20.8800C11—H11A0.9900
N1—C11.356 (2)C11—H11B0.9900
N1—C81.380 (2)C10—H10A0.9900
N1—C141.458 (2)C10—H10B0.9900
O2—C121.337 (3)C15—C161.523 (3)
O2—C131.436 (3)C15—H15A0.9900
C1—C21.373 (3)C15—H15B0.9900
C1—H10.9500C16—C171.513 (3)
C2—C31.440 (3)C16—H16A0.9900
C2—C91.462 (3)C16—H16B0.9900
O3—C121.197 (2)C5—C61.402 (3)
C3—C41.399 (3)C5—H50.9500
C3—C81.408 (3)C6—H60.9500
C4—C51.371 (3)C17—H17A0.9800
C4—H40.9500C17—H17B0.9800
C12—C111.495 (3)C17—H17C0.9800
C14—C151.514 (3)C13—H13A0.9800
C14—H14A0.9900C13—H13B0.9800
C14—H14B0.9900C13—H13C0.9800
C7—C61.371 (3)
C9—N2—C10121.69 (16)C12—C11—H11B108.9
C9—N2—H2119.2C10—C11—H11B108.9
C10—N2—H2119.2H11A—C11—H11B107.7
C1—N1—C8108.50 (15)N2—C10—C11113.24 (16)
C1—N1—C14125.40 (16)N2—C10—H10A108.9
C8—N1—C14125.93 (16)C11—C10—H10A108.9
C12—O2—C13116.39 (19)N2—C10—H10B108.9
N1—C1—C2110.77 (16)C11—C10—H10B108.9
N1—C1—H1124.6H10A—C10—H10B107.7
C2—C1—H1124.6C14—C15—C16111.46 (16)
C1—C2—C3106.16 (16)C14—C15—H15A109.3
C1—C2—C9127.25 (17)C16—C15—H15A109.3
C3—C2—C9126.32 (16)C14—C15—H15B109.3
C4—C3—C8118.55 (17)C16—C15—H15B109.3
C4—C3—C2135.00 (17)H15A—C15—H15B108.0
C8—C3—C2106.41 (16)C17—C16—C15114.53 (17)
O1—C9—N2120.95 (17)C17—C16—H16A108.6
O1—C9—C2120.46 (17)C15—C16—H16A108.6
N2—C9—C2118.54 (16)C17—C16—H16B108.6
C5—C4—C3118.83 (18)C15—C16—H16B108.6
C5—C4—H4120.6H16A—C16—H16B107.6
C3—C4—H4120.6C4—C5—C6121.53 (19)
O3—C12—O2122.8 (2)C4—C5—H5119.2
O3—C12—C11125.8 (2)C6—C5—H5119.2
O2—C12—C11111.45 (18)C7—C6—C5121.00 (18)
N1—C14—C15113.98 (15)C7—C6—H6119.5
N1—C14—H14A108.8C5—C6—H6119.5
C15—C14—H14A108.8C16—C17—H17A109.5
N1—C14—H14B108.8C16—C17—H17B109.5
C15—C14—H14B108.8H17A—C17—H17B109.5
H14A—C14—H14B107.7C16—C17—H17C109.5
C6—C7—C8117.49 (18)H17A—C17—H17C109.5
C6—C7—H7121.3H17B—C17—H17C109.5
C8—C7—H7121.3O2—C13—H13A109.5
N1—C8—C7129.22 (17)O2—C13—H13B109.5
N1—C8—C3108.14 (16)H13A—C13—H13B109.5
C7—C8—C3122.60 (18)O2—C13—H13C109.5
C12—C11—C10113.33 (16)H13A—C13—H13C109.5
C12—C11—H11A108.9H13B—C13—H13C109.5
C10—C11—H11A108.9
C8—N1—C1—C20.6 (2)C1—N1—C8—C7177.15 (19)
C14—N1—C1—C2176.18 (16)C14—N1—C8—C71.6 (3)
N1—C1—C2—C3−0.4 (2)C1—N1—C8—C3−0.6 (2)
N1—C1—C2—C9−174.69 (17)C14—N1—C8—C3−176.13 (16)
C1—C2—C3—C4−177.5 (2)C6—C7—C8—N1−177.13 (18)
C9—C2—C3—C4−3.0 (3)C6—C7—C8—C30.3 (3)
C1—C2—C3—C80.0 (2)C4—C3—C8—N1178.29 (16)
C9—C2—C3—C8174.42 (17)C2—C3—C8—N10.3 (2)
C10—N2—C9—O14.9 (3)C4—C3—C8—C70.4 (3)
C10—N2—C9—C2−177.58 (16)C2—C3—C8—C7−177.55 (17)
C1—C2—C9—O1177.91 (18)O3—C12—C11—C10−35.6 (3)
C3—C2—C9—O14.7 (3)O2—C12—C11—C10145.76 (17)
C1—C2—C9—N20.4 (3)C9—N2—C10—C11−74.0 (2)
C3—C2—C9—N2−172.86 (17)C12—C11—C10—N2−69.1 (2)
C8—C3—C4—C5−0.6 (3)N1—C14—C15—C16−175.70 (16)
C2—C3—C4—C5176.6 (2)C14—C15—C16—C17−70.2 (2)
C13—O2—C12—O3−1.3 (3)C3—C4—C5—C60.2 (3)
C13—O2—C12—C11177.36 (17)C8—C7—C6—C5−0.7 (3)
C1—N1—C14—C15110.6 (2)C4—C5—C6—C70.5 (3)
C8—N1—C14—C15−74.5 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.882.072.860 (2)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.882.072.860 (2)149

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  From pyrroles to 1-oxo-2,3,4,9-tetrahydro-1H-beta-carbolines: a new class of orally bioavailable mGluR1 antagonists.

Authors:  Romano Di Fabio; Fabrizio Micheli; Giuseppe Alvaro; Paolo Cavanni; Daniele Donati; Tatiana Gagliardi; Gabriele Fontana; Riccardo Giovannini; Micaela Maffeis; Anna Mingardi; Maria Elvira Tranquillini; Giovanni Vitulli
Journal:  Bioorg Med Chem Lett       Date:  2007-01-25       Impact factor: 2.823

3.  Ethyl 1-acetyl-1H-indole-3-carboxyl-ate.

Authors:  Tasneem Siddiquee; Shahid Islam; Dennis Bennett; Matthias Zeller; Mahmun Hossain
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-08

4.  Potent inhibition of checkpoint kinase activity by a hymenialdisine-derived indoloazepine.

Authors:  Vasudha Sharma; Jetze J Tepe
Journal:  Bioorg Med Chem Lett       Date:  2004-08-16       Impact factor: 2.823

  4 in total
  2 in total

1.  Methyl 3-(1H-indole-3-carboxamido)propionate hemihydrate.

Authors:  Gang Huang; Xing Yan Xu; Xiang Chao Zeng; Le Zheng; Kai Ping Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-26

2.  Methyl 2-(1H-indole-3-carboxamido)-acetate.

Authors:  Fang Hu; Le Zheng; Xiang Chao Zeng; Kai Ping Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-26
  2 in total

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