Literature DB >> 21583483

2,3-Dimethyl-6-nitro-2H-indazole.

Yan Chen, Zheng Fang, Ping Wei.   

Abstract

In the mol-ecule of the title compound, C(9)H(9)N(3)O(2), the indazole ring system is almost planar [maximum deviation = 0.019 (3) Å for the C atom bearing the nitro group]. In the crystal structure, inter-molecular C-H⋯O inter-actions link the mol-ecules into centrosymmetric dimers, forming R(2) (2)(18) ring motifs. Aromatic π-π contacts between indazole rings [centroid-centroid distances = 3.632 (1) and 3.705 (1) Å] may further stabilize the structure.

Entities:  

Year:  2009        PMID: 21583483      PMCID: PMC2977458          DOI: 10.1107/S1600536809025410

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Xu et al. (1999 ▶). For bond-length data, see: Allen et al. (1987 ▶). For ring-motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C9H9N3O2 M = 191.19 Triclinic, a = 6.5800 (13) Å b = 7.2050 (14) Å c = 10.752 (2) Å α = 75.07 (3)° β = 74.67 (3)° γ = 66.73 (3)° V = 444.81 (19) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 294 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.969, T max = 0.990 1756 measured reflections 1606 independent reflections 1292 reflections with I > 2σ(I) R int = 0.031 3 standard reflections frequency: 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.154 S = 1.00 1606 reflections 129 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809025410/hk2724sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809025410/hk2724Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9N3O2Z = 2
Mr = 191.19F(000) = 200
Triclinic, P1Dx = 1.427 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.5800 (13) ÅCell parameters from 25 reflections
b = 7.2050 (14) Åθ = 9–13°
c = 10.752 (2) ŵ = 0.11 mm1
α = 75.07 (3)°T = 294 K
β = 74.67 (3)°Block, colorless
γ = 66.73 (3)°0.30 × 0.20 × 0.10 mm
V = 444.81 (19) Å3
Enraf–Nonius CAD-4 diffractometer1292 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
graphiteθmax = 25.3°, θmin = 2.0°
ω/2θ scansh = 0→7
Absorption correction: ψ scan (North et al., 1968)k = −7→8
Tmin = 0.969, Tmax = 0.990l = −12→12
1756 measured reflections3 standard reflections every 120 min
1606 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054H-atom parameters constrained
wR(F2) = 0.154w = 1/[σ2(Fo2) + (0.08P)2 + 0.235P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
1606 reflectionsΔρmax = 0.32 e Å3
129 parametersΔρmin = −0.25 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.059 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2155 (5)0.7495 (5)−0.3831 (2)0.1020 (9)
O2−0.1339 (4)0.7845 (4)−0.33747 (19)0.0803 (7)
N1−0.2315 (3)0.7731 (3)0.25319 (18)0.0469 (5)
N2−0.3309 (3)0.7997 (3)0.15107 (18)0.0479 (5)
N30.0392 (4)0.7648 (3)−0.3051 (2)0.0611 (6)
C1−0.3707 (5)0.7880 (5)0.3829 (2)0.0660 (8)
H1A−0.51440.89410.37580.099*
H1B−0.29790.82020.43680.099*
H1C−0.39150.65940.42180.099*
C20.1367 (5)0.6977 (4)0.3176 (3)0.0601 (7)
H2B0.04560.70870.40320.090*
H2C0.20980.79710.29290.090*
H2D0.24820.56250.31860.090*
C3−0.0080 (4)0.7362 (3)0.2216 (2)0.0432 (6)
C4−0.1582 (3)0.7777 (3)0.0489 (2)0.0390 (5)
C5−0.1637 (4)0.7888 (3)−0.0830 (2)0.0446 (6)
H5A−0.29660.8160−0.11080.054*
C60.0376 (4)0.7573 (3)−0.1678 (2)0.0462 (6)
C70.2431 (4)0.7224 (4)−0.1315 (2)0.0517 (6)
H7A0.37410.7057−0.19430.062*
C80.2482 (4)0.7134 (3)−0.0049 (2)0.0470 (6)
H8A0.38190.69100.02040.056*
C90.0474 (3)0.7388 (3)0.0874 (2)0.0387 (5)
U11U22U33U12U13U23
O10.1021 (19)0.150 (2)0.0491 (12)−0.0512 (17)0.0174 (12)−0.0311 (13)
O20.1002 (17)0.0986 (16)0.0521 (12)−0.0371 (13)−0.0217 (11)−0.0183 (11)
N10.0480 (11)0.0573 (12)0.0389 (10)−0.0226 (9)−0.0063 (8)−0.0089 (8)
N20.0436 (11)0.0606 (12)0.0427 (11)−0.0218 (9)−0.0069 (8)−0.0098 (9)
N30.0804 (16)0.0572 (13)0.0453 (12)−0.0255 (11)−0.0051 (12)−0.0129 (10)
C10.0621 (17)0.095 (2)0.0422 (14)−0.0311 (15)0.0000 (12)−0.0173 (13)
C20.0642 (16)0.0669 (17)0.0564 (15)−0.0235 (13)−0.0231 (13)−0.0092 (12)
C30.0475 (13)0.0402 (12)0.0459 (12)−0.0177 (9)−0.0112 (10)−0.0077 (9)
C40.0400 (11)0.0369 (11)0.0427 (12)−0.0162 (9)−0.0058 (9)−0.0085 (9)
C50.0501 (13)0.0444 (12)0.0442 (13)−0.0207 (10)−0.0117 (10)−0.0061 (9)
C60.0611 (14)0.0384 (12)0.0389 (12)−0.0202 (10)−0.0034 (10)−0.0079 (9)
C70.0465 (13)0.0485 (13)0.0523 (14)−0.0148 (10)0.0048 (10)−0.0128 (11)
C80.0405 (12)0.0423 (12)0.0579 (14)−0.0137 (9)−0.0079 (10)−0.0104 (10)
C90.0426 (12)0.0306 (10)0.0448 (12)−0.0135 (8)−0.0098 (9)−0.0070 (8)
O1—N31.222 (3)C2—H2C0.9600
O2—N31.223 (3)C2—H2D0.9600
N1—N21.357 (3)C3—C91.389 (3)
N1—C11.456 (3)C4—C51.409 (3)
N1—C31.350 (3)C4—C91.420 (3)
N2—C41.346 (3)C5—C61.366 (3)
N3—C61.460 (3)C5—H5A0.9300
C1—H1A0.9600C6—C71.416 (4)
C1—H1B0.9600C7—C81.354 (3)
C1—H1C0.9600C7—H7A0.9300
C2—C31.487 (3)C8—C91.405 (3)
C2—H2B0.9600C8—H8A0.9300
N2—N1—C1118.6 (2)N1—C3—C2124.3 (2)
C3—N1—N2114.84 (19)C9—C3—C2130.3 (2)
C3—N1—C1126.6 (2)N2—C4—C5127.8 (2)
C4—N2—N1102.99 (17)N2—C4—C9111.81 (19)
O1—N3—O2122.6 (2)C5—C4—C9120.4 (2)
O1—N3—C6118.2 (2)C6—C5—C4116.1 (2)
O2—N3—C6119.2 (2)C6—C5—H5A121.9
N1—C1—H1A109.5C4—C5—H5A121.9
N1—C1—H1B109.5C5—C6—C7124.2 (2)
H1A—C1—H1B109.5C5—C6—N3117.7 (2)
N1—C1—H1C109.5C7—C6—N3118.1 (2)
H1A—C1—H1C109.5C8—C7—C6119.7 (2)
H1B—C1—H1C109.5C8—C7—H7A120.1
C3—C2—H2B109.5C6—C7—H7A120.1
C3—C2—H2C109.5C7—C8—C9118.6 (2)
H2B—C2—H2C109.5C7—C8—H8A120.7
C3—C2—H2D109.5C9—C8—H8A120.7
H2B—C2—H2D109.5C3—C9—C8134.1 (2)
H2C—C2—H2D109.5C3—C9—C4105.00 (19)
N1—C3—C9105.36 (19)C8—C9—C4120.9 (2)
C1—N1—N2—C4179.6 (2)C2—C3—C9—C8−2.1 (4)
C3—N1—N2—C40.1 (2)N2—C4—C5—C6−178.9 (2)
N2—N1—C3—C2−178.6 (2)C9—C4—C5—C60.9 (3)
N2—N1—C3—C90.2 (2)N2—C4—C9—C30.4 (2)
C1—N1—C3—C21.9 (4)N2—C4—C9—C8−179.25 (18)
C1—N1—C3—C9−179.3 (2)C5—C4—C9—C3−179.41 (19)
N1—N2—C4—C5179.5 (2)C5—C4—C9—C80.9 (3)
N1—N2—C4—C9−0.3 (2)C4—C5—C6—C7−2.2 (3)
O1—N3—C6—C5175.6 (2)C4—C5—C6—N3179.20 (19)
O1—N3—C6—C7−3.1 (3)C5—C6—C7—C81.8 (4)
O2—N3—C6—C5−5.0 (3)N3—C6—C7—C8−179.7 (2)
O2—N3—C6—C7176.4 (2)C6—C7—C8—C90.2 (3)
N1—C3—C9—C4−0.4 (2)C7—C8—C9—C3179.0 (2)
N1—C3—C9—C8179.3 (2)C7—C8—C9—C4−1.4 (3)
C2—C3—C9—C4178.3 (2)
D—H···AD—HH···AD···AD—H···A
C1—H1A···O2i0.962.583.533 (4)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯O2i0.962.583.533 (4)171

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

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1.  2-Methyl-6-nitro-2H-indazole.

Authors:  Li Long; Bing-Ni Liu; Mo Liu; Deng-Ke Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-28
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