Literature DB >> 21583480

1,2-Bis[1-(3-methyl-sulfanyl-1,2,4-triazin-5-yl)ethyl-idene]diazane.

Mariusz Mojzych, Zbigniew Karczmarzyk, Zofia Urbańczyk-Lipkowska, Przemysław Kalicki.   

Abstract

The mol-ecule of the title compound, C(12)H(14)N(8)S(2), has an N-N gauche conformation. The triazine rings are nearly coplanar with respect to the imide bonds [C-C-C-N torsion angles = -15.3 (3) and -15.8 (3)°] and they are twisted by 77.88 (7)°. The overall conformation of the mol-ecule is stabilized by intra-molecular C-H⋯N hydrogen bonding. The mol-ecular packing is influenced by π-π inter-actions of the triazine systems with a shortest centroid-centroid separation of 3.5242 (12) Å.

Entities:  

Year:  2009        PMID: 21583480      PMCID: PMC2977495          DOI: 10.1107/S1600536809025033

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of hydrazones, see: Rollas et al. (2002 ▶); Terzioglu & Gürsoy (2003 ▶); Bedia et al. (2006 ▶). For the synthesis, see: Karczmarzyk et al. (2000 ▶); Rykowski et al. (2000 ▶); Mojzych & Rykowski (2003 ▶). For related structures, see: Lewis et al. (2000 ▶); Sauro & Workentin (2001 ▶); Tai et al. (2008 ▶).

Experimental

Crystal data

C12H14N8S2 M = 334.43 Monoclinic, a = 14.4962 (4) Å b = 7.0814 (2) Å c = 15.6619 (5) Å β = 107.465 (2)° V = 1533.63 (8) Å3 Z = 4 Cu Kα radiation μ = 3.24 mm−1 T = 293 K 0.32 × 0.22 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.474, T max = 0.753 5750 measured reflections 2635 independent reflections 2200 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.117 S = 1.03 2635 reflections 199 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97, WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809025033/kp2223sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809025033/kp2223Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N8S2F(000) = 696
Mr = 334.43Dx = 1.448 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 1791 reflections
a = 14.4962 (4) Åθ = 5.8–66.9°
b = 7.0814 (2) ŵ = 3.24 mm1
c = 15.6619 (5) ÅT = 293 K
β = 107.465 (2)°Plate, yellow
V = 1533.63 (8) Å30.32 × 0.22 × 0.08 mm
Z = 4
Bruker APEXII CCD diffractometer2635 independent reflections
Radiation source: fine-focus sealed tube2200 reflections with I > 2σ(I)
graphiteRint = 0.035
φ and ω scansθmax = 67.7°, θmin = 5.8°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −17→17
Tmin = 0.474, Tmax = 0.753k = −8→2
5750 measured reflectionsl = −18→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: difference Fourier map
wR(F2) = 0.117H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0575P)2 + 0.4463P] where P = (Fo2 + 2Fc2)/3
2635 reflections(Δ/σ)max < 0.001
199 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S170.29719 (4)0.25053 (8)0.43807 (4)0.0484 (2)
S210.94963 (5)0.20147 (9)0.04349 (4)0.0524 (2)
N10.56957 (14)0.2978 (3)0.57615 (13)0.0434 (4)
N20.47200 (14)0.3040 (3)0.55353 (12)0.0416 (4)
N40.46056 (13)0.1897 (2)0.40671 (11)0.0369 (4)
N80.69264 (14)0.1583 (3)0.38213 (12)0.0430 (4)
N90.74256 (14)0.0796 (3)0.32936 (13)0.0437 (5)
N110.92948 (16)−0.1765 (3)0.21425 (15)0.0530 (5)
N120.95071 (15)−0.0836 (3)0.14810 (14)0.0513 (5)
N140.86038 (13)0.1842 (2)0.17013 (12)0.0391 (4)
C30.42339 (16)0.2505 (3)0.47130 (15)0.0365 (5)
C50.55527 (16)0.1885 (3)0.42894 (14)0.0346 (5)
C60.61047 (17)0.2431 (3)0.51602 (15)0.0384 (5)
H610.67760.24030.53120.058*
C70.60199 (16)0.1214 (3)0.36205 (14)0.0373 (5)
C100.77872 (16)0.1880 (3)0.28245 (14)0.0399 (5)
C130.91659 (16)0.0920 (3)0.13019 (15)0.0410 (5)
C150.83999 (15)0.0913 (3)0.23536 (14)0.0374 (5)
C160.87630 (17)−0.0913 (3)0.25750 (16)0.0476 (6)
H1610.8624−0.15440.30420.071*
C180.27045 (19)0.3325 (3)0.53668 (18)0.0524 (6)
H1810.29210.24080.58360.079*
H1820.20190.35040.52350.079*
H1830.30300.45020.55570.079*
C190.54418 (18)0.0180 (3)0.28090 (15)0.0470 (6)
H1910.5800−0.08970.27120.071*
H1920.53090.10020.22990.071*
H1930.4844−0.02320.28920.071*
C200.7638 (2)0.3954 (3)0.27192 (19)0.0583 (7)
H2010.82220.45410.26810.087*
H2020.74760.44510.32260.087*
H2030.71220.42110.21830.087*
C220.9029 (2)0.4349 (4)0.04713 (18)0.0561 (6)
H2210.83440.42840.03770.084*
H2220.91560.51090.00110.084*
H2230.93370.49040.10450.084*
U11U22U33U12U13U23
S170.0406 (3)0.0580 (4)0.0483 (4)0.0010 (3)0.0158 (3)−0.0040 (3)
S210.0571 (4)0.0614 (4)0.0505 (4)−0.0013 (3)0.0341 (3)−0.0052 (3)
N10.0458 (11)0.0510 (10)0.0343 (10)−0.0001 (9)0.0135 (8)−0.0036 (8)
N20.0461 (11)0.0460 (10)0.0351 (10)0.0023 (8)0.0157 (8)−0.0016 (8)
N40.0431 (10)0.0387 (9)0.0315 (9)0.0004 (8)0.0151 (8)0.0010 (7)
N80.0475 (11)0.0490 (10)0.0386 (10)−0.0007 (9)0.0224 (9)−0.0009 (8)
N90.0470 (11)0.0506 (10)0.0401 (10)0.0022 (9)0.0232 (9)−0.0007 (8)
N110.0533 (12)0.0532 (11)0.0548 (12)0.0129 (10)0.0196 (10)0.0027 (10)
N120.0525 (12)0.0544 (11)0.0522 (12)0.0094 (9)0.0237 (10)−0.0023 (9)
N140.0382 (10)0.0453 (10)0.0372 (10)−0.0016 (8)0.0165 (8)−0.0044 (8)
C30.0428 (12)0.0319 (10)0.0381 (12)0.0010 (9)0.0172 (10)0.0033 (8)
C50.0435 (12)0.0299 (9)0.0340 (11)−0.0010 (9)0.0169 (9)0.0039 (8)
C60.0389 (12)0.0422 (11)0.0357 (11)−0.0008 (9)0.0139 (9)−0.0008 (9)
C70.0493 (13)0.0349 (10)0.0320 (11)0.0016 (9)0.0188 (9)0.0052 (8)
C100.0391 (12)0.0493 (12)0.0337 (11)0.0012 (9)0.0143 (9)−0.0020 (9)
C130.0375 (12)0.0494 (12)0.0392 (12)−0.0022 (10)0.0161 (9)−0.0091 (9)
C150.0343 (11)0.0458 (11)0.0323 (11)−0.0018 (9)0.0105 (9)−0.0030 (9)
C160.0470 (14)0.0528 (13)0.0440 (13)0.0081 (10)0.0154 (11)0.0057 (10)
C180.0534 (15)0.0535 (13)0.0598 (16)0.0080 (11)0.0313 (13)0.0023 (12)
C190.0565 (15)0.0510 (13)0.0373 (12)−0.0026 (11)0.0198 (11)−0.0064 (10)
C200.0782 (19)0.0466 (13)0.0662 (17)0.0049 (13)0.0459 (15)−0.0011 (12)
C220.0527 (15)0.0635 (15)0.0593 (16)0.0019 (12)0.0280 (13)0.0089 (12)
S17—C31.745 (2)C6—H610.9300
S17—C181.798 (2)C7—C191.488 (3)
S21—C131.751 (2)C10—C151.481 (3)
S21—C221.794 (3)C10—C201.487 (3)
N1—C61.313 (3)C15—C161.400 (3)
N1—N21.352 (3)C16—H1610.9300
N2—C31.324 (3)C18—H1810.9600
N4—C51.311 (3)C18—H1820.9600
N4—C31.352 (3)C18—H1830.9600
N8—C71.283 (3)C19—H1910.9600
N8—N91.370 (2)C19—H1920.9600
N9—C101.279 (3)C19—H1930.9600
N11—C161.315 (3)C20—H2010.9600
N11—N121.339 (3)C20—H2020.9600
N12—C131.337 (3)C20—H2030.9600
N14—C151.321 (3)C22—H2210.9600
N14—C131.337 (3)C22—H2220.9600
C5—C61.412 (3)C22—H2230.9600
C5—C71.486 (3)
C3—S17—C18102.76 (12)N14—C15—C10117.49 (19)
C13—S21—C22100.93 (11)C16—C15—C10122.7 (2)
C6—N1—N2118.93 (19)N11—C16—C15122.1 (2)
C3—N2—N1117.08 (18)N11—C16—H161119.0
C5—N4—C3115.11 (18)C15—C16—H161119.0
C7—N8—N9117.19 (19)S17—C18—H181109.5
C10—N9—N8118.97 (18)S17—C18—H182109.5
C16—N11—N12118.7 (2)H181—C18—H182109.5
C13—N12—N11117.58 (19)S17—C18—H183109.5
C15—N14—C13115.32 (19)H181—C18—H183109.5
N2—C3—N4127.1 (2)H182—C18—H183109.5
N2—C3—S17119.62 (17)C7—C19—H191109.5
N4—C3—S17113.23 (17)C7—C19—H192109.5
N4—C5—C6119.94 (19)H191—C19—H192109.5
N4—C5—C7118.52 (19)C7—C19—H193109.5
C6—C5—C7121.5 (2)H191—C19—H193109.5
N1—C6—C5121.8 (2)H192—C19—H193109.5
N1—C6—H61119.1C10—C20—H201109.5
C5—C6—H61119.1C10—C20—H202109.5
N8—C7—C19125.6 (2)H201—C20—H202109.5
N8—C7—C5114.34 (19)C10—C20—H203109.5
C19—C7—C5120.0 (2)H201—C20—H203109.5
N9—C10—C15114.78 (19)H202—C20—H203109.5
N9—C10—C20125.9 (2)S21—C22—H221109.5
C15—C10—C20119.33 (19)S21—C22—H222109.5
N12—C13—N14126.5 (2)H221—C22—H222109.5
N12—C13—S21113.86 (16)S21—C22—H223109.5
N14—C13—S21119.58 (17)H221—C22—H223109.5
N14—C15—C16119.80 (19)H222—C22—H223109.5
C6—N1—N2—C31.1 (3)C6—C5—C7—C19163.73 (19)
C7—N8—N9—C10114.8 (2)N8—N9—C10—C15173.76 (19)
C16—N11—N12—C130.3 (3)N8—N9—C10—C20−6.5 (4)
N1—N2—C3—N40.1 (3)N11—N12—C13—N14−2.1 (4)
N1—N2—C3—S17178.80 (15)N11—N12—C13—S21179.33 (17)
C5—N4—C3—N2−1.6 (3)C15—N14—C13—N122.1 (3)
C5—N4—C3—S17179.68 (14)C15—N14—C13—S21−179.36 (16)
C18—S17—C3—N20.15 (19)C22—S21—C13—N12−174.30 (19)
C18—S17—C3—N4179.03 (15)C22—S21—C13—N147.0 (2)
C3—N4—C5—C61.8 (3)C13—N14—C15—C16−0.5 (3)
C3—N4—C5—C7179.32 (16)C13—N14—C15—C10179.41 (19)
N2—N1—C6—C5−0.8 (3)N9—C10—C15—N14164.3 (2)
N4—C5—C6—N1−0.7 (3)C20—C10—C15—N14−15.4 (3)
C7—C5—C6—N1−178.20 (18)N9—C10—C15—C16−15.8 (3)
N9—N8—C7—C19−7.1 (3)C20—C10—C15—C16164.4 (2)
N9—N8—C7—C5171.86 (17)N12—N11—C16—C151.2 (4)
N4—C5—C7—N8167.24 (18)N14—C15—C16—N11−1.1 (4)
C6—C5—C7—N8−15.3 (3)C10—C15—C16—N11179.0 (2)
N4—C5—C7—C19−13.8 (3)
D—H···AD—HH···AD···AD—H···A
C19—H193···N40.962.482.875 (3)104
C20—H202···N80.962.462.816 (3)101
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C19—H193⋯N40.962.482.875 (3)104
C20—H202⋯N80.962.462.816 (3)101
  8 in total

1.  4-chloroacetophenone

Authors: 
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2.  Evaluation of the extent of conjugation in symmetrical and asymmetrical aryl-substituted acetophenone azines using electrochemical methods.

Authors:  V A Sauro; M S Workentin
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3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Synthesis and antimicrobial activity of some new hydrazones of 4-fluorobenzoic acid hydrazide and 3-acetyl-2,5-disubstituted-1,3,4-oxadiazolines.

Authors:  Sevim Rollas; Nehir Gulerman; Habibe Erdeniz
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5.  Synthesis and characterization of novel hydrazide-hydrazones and the study of their structure-antituberculosis activity.

Authors:  Koçyiğit-Kaymakçioğlu Bedia; Oruç Elçin; Unsalan Seda; Kandemirli Fatma; Shvets Nathaly; Rollas Sevim; Anatholy Dimoglo
Journal:  Eur J Med Chem       Date:  2006-08-17       Impact factor: 6.514

6.  Synthesis and anticancer evaluation of some new hydrazone derivatives of 2,6-dimethylimidazo[2,1-b][1,3,4]thiadiazole-5-carbohydrazide.

Authors:  Nalan Terzioglu; Aysel Gürsoy
Journal:  Eur J Med Chem       Date:  2003 Jul-Aug       Impact factor: 6.514

7.  2,2'-(1,1'-Azinodiethyl-idyne)diphenol.

Authors:  Xi-Shi Tai; Jun Xu; Yi-Min Feng; Zu-Pei Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-26

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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