| Literature DB >> 21583463 |
K Prabakaran, Venkatesha R Hathwar, T Maiyalagan, M V Kirthana, F Nawaz Khan.
Abstract
In the title compound, C(5)H(7)N(3)O(2), all non-H atoms lie in a common plane, with a maximum deviation of 0.061 (2)° for the ester methyl C atom. The structure is stabilized by inter-molecular C-H⋯O hydrogen bonds.Entities:
Year: 2009 PMID: 21583463 PMCID: PMC2977234 DOI: 10.1107/S1600536809024829
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H7N3O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 783 reflections |
| θ = 2.0–21.4° | |
| µ = 0.11 mm−1 | |
| β = 92.05 (2)° | Plate, colorless |
| 0.30 × 0.20 × 0.10 mm | |
| Oxford Xcalibur Eos(Nova) CCD detector diffractometer | 1262 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 910 reflections with |
| graphite | |
| ω scans | θmax = 25.5°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 7464 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1262 reflections | (Δ/σ)max < 0.001 |
| 93 parameters | Δρmax = 0.19 e Å−3 |
| 0 restraints | Δρmin = −0.16 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| N1 | 0.2453 (4) | 0.56849 (18) | 0.43005 (7) | 0.0442 (4) | |
| N2 | 0.3338 (4) | 0.71794 (19) | 0.45090 (7) | 0.0449 (4) | |
| N3 | 0.4803 (5) | 0.8185 (2) | 0.41047 (7) | 0.0562 (5) | |
| O1 | 0.3755 (4) | 0.42664 (18) | 0.27655 (6) | 0.0620 (5) | |
| O2 | 0.1319 (4) | 0.29948 (17) | 0.35597 (6) | 0.0539 (4) | |
| C1 | 0.4849 (6) | 0.7258 (2) | 0.35967 (9) | 0.0547 (6) | |
| H1 | 0.5707 | 0.7596 | 0.3222 | 0.066* | |
| C2 | 0.3408 (5) | 0.5700 (2) | 0.37131 (8) | 0.0407 (5) | |
| C3 | 0.2884 (5) | 0.4274 (2) | 0.32930 (8) | 0.0435 (5) | |
| C4 | 0.0524 (6) | 0.1556 (3) | 0.31750 (10) | 0.0634 (6) | |
| H4A | −0.0937 | 0.1895 | 0.2834 | 0.095* | |
| H4B | −0.0597 | 0.0720 | 0.3414 | 0.095* | |
| H4C | 0.2579 | 0.1095 | 0.3022 | 0.095* | |
| C5 | 0.2690 (6) | 0.7700 (3) | 0.51385 (9) | 0.0567 (6) | |
| H5A | 0.1463 | 0.6831 | 0.5342 | 0.085* | |
| H5B | 0.1374 | 0.8715 | 0.5130 | 0.085* | |
| H5C | 0.4805 | 0.7896 | 0.5359 | 0.085* |
| N1 | 0.0534 (11) | 0.0371 (9) | 0.0423 (9) | −0.0034 (7) | 0.0041 (7) | 0.0000 (7) |
| N2 | 0.0581 (11) | 0.0348 (9) | 0.0419 (9) | −0.0033 (7) | 0.0029 (7) | −0.0004 (7) |
| N3 | 0.0755 (13) | 0.0424 (10) | 0.0511 (10) | −0.0100 (9) | 0.0069 (9) | 0.0050 (8) |
| O1 | 0.0904 (12) | 0.0553 (9) | 0.0413 (8) | 0.0058 (8) | 0.0164 (7) | 0.0007 (6) |
| O2 | 0.0715 (10) | 0.0457 (8) | 0.0450 (8) | −0.0120 (7) | 0.0066 (6) | −0.0058 (6) |
| C1 | 0.0740 (15) | 0.0480 (12) | 0.0427 (11) | −0.0060 (10) | 0.0109 (10) | 0.0065 (9) |
| C2 | 0.0454 (11) | 0.0381 (10) | 0.0388 (10) | 0.0017 (8) | 0.0034 (8) | 0.0050 (8) |
| C3 | 0.0502 (12) | 0.0422 (11) | 0.0382 (10) | 0.0072 (9) | 0.0018 (8) | 0.0038 (8) |
| C4 | 0.0752 (16) | 0.0449 (12) | 0.0699 (15) | −0.0064 (11) | 0.0016 (12) | −0.0155 (10) |
| C5 | 0.0770 (16) | 0.0479 (13) | 0.0455 (11) | −0.0022 (10) | 0.0067 (10) | −0.0084 (9) |
| N1—N2 | 1.315 (2) | C1—H1 | 0.9300 |
| N1—C2 | 1.340 (2) | C2—C3 | 1.464 (3) |
| N2—N3 | 1.333 (2) | C4—H4A | 0.9600 |
| N2—C5 | 1.456 (2) | C4—H4B | 0.9600 |
| N3—C1 | 1.325 (2) | C4—H4C | 0.9600 |
| O1—C3 | 1.205 (2) | C5—H5A | 0.9600 |
| O2—C3 | 1.333 (2) | C5—H5B | 0.9600 |
| O2—C4 | 1.444 (2) | C5—H5C | 0.9600 |
| C1—C2 | 1.391 (3) | ||
| N2—N1—C2 | 103.75 (15) | O2—C3—C2 | 112.31 (16) |
| N1—N2—N3 | 115.69 (15) | O2—C4—H4A | 109.5 |
| N1—N2—C5 | 121.67 (15) | O2—C4—H4B | 109.5 |
| N3—N2—C5 | 122.63 (16) | H4A—C4—H4B | 109.5 |
| C1—N3—N2 | 103.33 (16) | O2—C4—H4C | 109.5 |
| C3—O2—C4 | 116.74 (16) | H4A—C4—H4C | 109.5 |
| N3—C1—C2 | 109.13 (17) | H4B—C4—H4C | 109.5 |
| N3—C1—H1 | 125.4 | N2—C5—H5A | 109.5 |
| C2—C1—H1 | 125.4 | N2—C5—H5B | 109.5 |
| N1—C2—C1 | 108.10 (16) | H5A—C5—H5B | 109.5 |
| N1—C2—C3 | 123.02 (17) | N2—C5—H5C | 109.5 |
| C1—C2—C3 | 128.88 (17) | H5A—C5—H5C | 109.5 |
| O1—C3—O2 | 124.03 (17) | H5B—C5—H5C | 109.5 |
| O1—C3—C2 | 123.65 (18) | ||
| C2—N1—N2—N3 | 0.1 (2) | N3—C1—C2—C3 | 179.47 (18) |
| C2—N1—N2—C5 | 179.01 (17) | C4—O2—C3—O1 | −2.7 (3) |
| N1—N2—N3—C1 | 0.2 (2) | C4—O2—C3—C2 | 176.96 (16) |
| C5—N2—N3—C1 | −178.75 (18) | N1—C2—C3—O1 | −179.38 (18) |
| N2—N3—C1—C2 | −0.3 (2) | C1—C2—C3—O1 | 1.7 (3) |
| N2—N1—C2—C1 | −0.3 (2) | N1—C2—C3—O2 | 1.0 (3) |
| N2—N1—C2—C3 | −179.42 (17) | C1—C2—C3—O2 | −177.96 (19) |
| N3—C1—C2—N1 | 0.4 (2) |
| H··· | ||||
| C1—H1···O1i | 0.93 | 2.53 | 3.416 (3) | 159 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C1—H1⋯O1i | 0.93 | 2.53 | 3.416 (3) | 159 |
Symmetry code: (i) .