Literature DB >> 21583440

3-Hydr-oxy-3-[(2-methyl-propano-yl)meth-yl]indolin-2-one.

Gang Chen, Bin Liu, Ying Tang, Jingfang Xu.   

Abstract

The title compound, C(13)H(15)NO(3), was synthesized by the Aldol reaction of isatin and 3-methyl-butan-2-one refluxing in methanol catalyzed by dimethyl-amine. The packing of the mol-ecules in the crystal structure features inter-molecular N-H⋯O and O-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583440      PMCID: PMC2977200          DOI: 10.1107/S1600536809024611

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Garden et al. (2002 ▶); Li, et al. (2008 ▶). For the bioactivity of derivatives, see: Glover et al. (1988 ▶); Marti & Carreira (2003 ▶); Pandeya et al. (2000 ▶); Sun et al. (1998 ▶); Teitz et al. (1994 ▶).

Experimental

Crystal data

C13H15NO3 M = 233.26 Monoclinic, a = 11.885 (2) Å b = 5.9244 (12) Å c = 16.695 (3) Å β = 98.60 (3)° V = 1162.3 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.23 × 0.18 × 0.15 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2005 ▶) T min = 0.945, T max = 0.985 8623 measured reflections 2577 independent reflections 1902 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.161 S = 1.09 2577 reflections 155 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809024611/ww2134sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024611/ww2134Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15NO3F(000) = 496
Mr = 233.26Dx = 1.333 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3113 reflections
a = 11.885 (2) Åθ = 1.9–27.4°
b = 5.9244 (12) ŵ = 0.10 mm1
c = 16.695 (3) ÅT = 293 K
β = 98.60 (3)°Block, colorless
V = 1162.3 (5) Å30.23 × 0.18 × 0.15 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2577 independent reflections
Radiation source: fine-focus sealed tube1902 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 27.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2005)h = −15→14
Tmin = 0.945, Tmax = 0.985k = −7→7
8623 measured reflectionsl = −21→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.161w = 1/[σ2(Fo2) + (0.0562P)2 + 0.2707P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
2577 reflectionsΔρmax = 0.24 e Å3
155 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4'
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.018 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.57929 (9)0.14669 (16)0.55228 (6)0.0335 (3)
H2A0.51830.21280.54110.050*
O10.62325 (9)0.59992 (19)0.48205 (6)0.0368 (3)
N10.60709 (11)0.6720 (2)0.61556 (8)0.0324 (3)
H1A0.58300.80880.61030.039*
O30.87069 (11)0.5445 (2)0.61665 (9)0.0542 (4)
C10.63221 (12)0.5435 (2)0.55343 (9)0.0292 (4)
C80.66420 (12)0.3373 (2)0.67659 (9)0.0278 (4)
C90.77543 (13)0.2149 (3)0.56337 (10)0.0320 (4)
H9A0.78680.06110.58290.038*
H9B0.76790.21050.50470.038*
C100.87990 (14)0.3519 (3)0.59554 (10)0.0347 (4)
C70.62536 (13)0.5539 (2)0.69000 (9)0.0289 (4)
C20.66509 (12)0.3034 (2)0.58702 (9)0.0276 (4)
C30.69101 (13)0.1899 (3)0.74041 (9)0.0322 (4)
H3A0.71850.04620.73200.039*
C60.61006 (14)0.6260 (3)0.76617 (10)0.0351 (4)
H6A0.58320.77020.77460.042*
C40.67614 (14)0.2602 (3)0.81790 (10)0.0383 (4)
H4A0.69310.16210.86150.046*
C50.63660 (14)0.4736 (3)0.83018 (10)0.0381 (4)
H5A0.62730.51760.88230.046*
C110.99369 (15)0.2365 (3)0.59805 (12)0.0500 (5)
H11A0.99320.15390.54710.060*
C121.0100 (2)0.0663 (4)0.66754 (18)0.0843 (9)
H12A0.9472−0.03750.66140.126*
H12B1.01330.14460.71820.126*
H12C1.0796−0.01530.66670.126*
C131.09104 (19)0.4058 (5)0.60623 (16)0.0752 (7)
H13A1.07970.50890.56140.113*
H13B1.16170.32710.60650.113*
H13C1.09310.48800.65600.113*
U11U22U33U12U13U23
O20.0286 (6)0.0262 (6)0.0431 (7)−0.0024 (4)−0.0035 (5)−0.0012 (4)
O10.0390 (7)0.0385 (7)0.0323 (6)0.0007 (5)0.0031 (5)0.0073 (5)
N10.0381 (8)0.0242 (6)0.0349 (8)0.0044 (5)0.0053 (6)0.0016 (5)
O30.0401 (8)0.0400 (8)0.0817 (10)−0.0055 (5)0.0068 (7)−0.0124 (7)
C10.0247 (8)0.0269 (8)0.0353 (9)−0.0018 (6)0.0021 (6)0.0021 (6)
C80.0247 (8)0.0271 (8)0.0317 (8)−0.0010 (6)0.0044 (6)0.0004 (6)
C90.0290 (8)0.0312 (8)0.0352 (8)0.0019 (6)0.0025 (6)−0.0032 (6)
C100.0325 (9)0.0390 (9)0.0334 (9)−0.0020 (7)0.0074 (7)−0.0007 (7)
C70.0252 (8)0.0283 (8)0.0332 (8)−0.0003 (6)0.0041 (6)0.0025 (6)
C20.0263 (8)0.0253 (8)0.0300 (8)−0.0016 (6)0.0002 (6)−0.0015 (6)
C30.0324 (9)0.0277 (8)0.0360 (9)0.0022 (6)0.0034 (7)0.0036 (6)
C60.0346 (9)0.0301 (9)0.0415 (9)0.0009 (6)0.0085 (7)−0.0054 (7)
C40.0377 (10)0.0429 (10)0.0333 (9)−0.0001 (7)0.0022 (7)0.0066 (7)
C50.0340 (9)0.0512 (11)0.0298 (8)−0.0023 (7)0.0071 (6)−0.0045 (7)
C110.0313 (10)0.0610 (12)0.0566 (12)0.0022 (8)0.0033 (8)−0.0117 (10)
C120.0569 (15)0.0593 (14)0.127 (2)0.0053 (11)−0.0164 (14)0.0254 (15)
C130.0335 (12)0.1033 (19)0.0886 (18)−0.0095 (12)0.0084 (11)0.0082 (15)
O2—C21.4356 (16)C3—C41.395 (2)
O2—H2A0.8200C3—H3A0.9300
O1—C11.2270 (18)C6—C51.399 (2)
N1—C11.355 (2)C6—H6A0.9300
N1—C71.4144 (19)C4—C51.375 (3)
N1—H1A0.8600C4—H4A0.9300
O3—C101.204 (2)C5—H5A0.9300
C1—C21.557 (2)C11—C131.522 (3)
C8—C31.378 (2)C11—C121.527 (3)
C8—C71.393 (2)C11—H11A0.9800
C8—C21.510 (2)C12—H12A0.9600
C9—C101.513 (2)C12—H12B0.9600
C9—C21.518 (2)C12—H12C0.9600
C9—H9A0.9700C13—H13A0.9600
C9—H9B0.9700C13—H13B0.9600
C10—C111.511 (2)C13—H13C0.9600
C7—C61.379 (2)
C2—O2—H2A109.5C8—C3—H3A120.6
C1—N1—C7111.85 (12)C4—C3—H3A120.6
C1—N1—H1A124.1C7—C6—C5117.29 (15)
C7—N1—H1A124.1C7—C6—H6A121.4
O1—C1—N1126.39 (14)C5—C6—H6A121.4
O1—C1—C2125.40 (14)C5—C4—C3120.42 (15)
N1—C1—C2108.04 (13)C5—C4—H4A119.8
C3—C8—C7120.23 (14)C3—C4—H4A119.8
C3—C8—C2130.26 (14)C4—C5—C6121.53 (15)
C7—C8—C2109.47 (12)C4—C5—H5A119.2
C10—C9—C2114.65 (13)C6—C5—H5A119.2
C10—C9—H9A108.6C13—C11—C10111.69 (16)
C2—C9—H9A108.6C13—C11—C12111.02 (18)
C10—C9—H9B108.6C10—C11—C12109.35 (17)
C2—C9—H9B108.6C13—C11—H11A108.2
H9A—C9—H9B107.6C10—C11—H11A108.2
O3—C10—C11122.77 (15)C12—C11—H11A108.2
O3—C10—C9120.45 (15)C11—C12—H12A109.5
C11—C10—C9116.77 (14)C11—C12—H12B109.5
C6—C7—C8121.75 (14)H12A—C12—H12B109.5
C6—C7—N1129.26 (14)C11—C12—H12C109.5
C8—C7—N1108.99 (13)H12A—C12—H12C109.5
O2—C2—C8112.10 (12)H12B—C12—H12C109.5
O2—C2—C9105.10 (11)C11—C13—H13A109.5
C8—C2—C9115.95 (12)C11—C13—H13B109.5
O2—C2—C1108.68 (11)H13A—C13—H13B109.5
C8—C2—C1101.33 (11)C11—C13—H13C109.5
C9—C2—C1113.69 (13)H13A—C13—H13C109.5
C8—C3—C4118.76 (15)H13B—C13—H13C109.5
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.862.223.0049 (18)151
O2—H2A···O1ii0.822.002.8220 (17)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.862.223.0049 (18)151
O2—H2A⋯O1ii0.822.002.8220 (17)175

Symmetry codes: (i) ; (ii) .

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