| Literature DB >> 21583322 |
Bo Wang1.
Abstract
The title compound, [CoCl(2)(C(6)H(5)N(5))(H(2)O)(3)]·H(2)O, was synthesized by hydro-thermal reaction of CoCl(2) with 4-(2H-tetra-zol-5-yl)pyridine. The Co(II) cation is coordinated by two Cl(-) ions, one N atom from the 5-(4-pyridinio)tetra-zolate zwitterion and three O atoms from three water mol-ecules in a distorted octa-hedral geometry. In the crystal, mol-ecules are linked into a three-dimensional network by N-H⋯Cl hydrogen bonds and O-H⋯O/N/Cl hydrogen bonds involv-ing both coordinated and uncoordinated water mol-ecules. Strong π-π stacking is present between parallel pyridinium and tetra-zolate rings [centroid-centroid distances = 3.411 (2) and 3.436 (2) Å].Entities:
Year: 2009 PMID: 21583322 PMCID: PMC2977361 DOI: 10.1107/S1600536809024337
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [CoCl2(C6H5N5)(H2O)3]·H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2619 reflections | |
| θ = 3.4–27.5° | |
| µ = 1.83 mm−1 | |
| α = 110.72 (3)° | |
| β = 97.05 (3)° | Block, pink |
| γ = 106.27 (3)° | 0.15 × 0.15 × 0.10 mm |
| Rigaku Mercury2 diffractometer | 2842 independent reflections |
| Radiation source: fine-focus sealed tube | 2619 reflections with |
| graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 3.4° |
| CCD profile fitting scans | |
| Absorption correction: multi-scan ( | |
| 6551 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2842 reflections | (Δ/σ)max = 0.001 |
| 163 parameters | Δρmax = 0.34 e Å−3 |
| 0 restraints | Δρmin = −0.49 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| N5 | 0.6736 (3) | 0.84317 (19) | 0.28889 (17) | 0.0224 (4) | |
| C6 | 0.6810 (3) | 0.8500 (2) | 0.41148 (19) | 0.0188 (4) | |
| N1 | 0.8708 (3) | 1.2651 (2) | 0.74897 (19) | 0.0281 (4) | |
| H1A | 0.9098 | 1.3503 | 0.8183 | 0.034* | |
| N2 | 0.6143 (3) | 0.70917 (18) | 0.41274 (16) | 0.0192 (3) | |
| N4 | 0.5984 (3) | 0.69178 (19) | 0.21085 (16) | 0.0224 (4) | |
| C3 | 0.7487 (3) | 0.9955 (2) | 0.52968 (19) | 0.0183 (4) | |
| C5 | 0.8008 (4) | 1.1310 (3) | 0.7624 (2) | 0.0301 (5) | |
| H5 | 0.7952 | 1.1308 | 0.8452 | 0.036* | |
| N3 | 0.5635 (3) | 0.61292 (18) | 0.28545 (16) | 0.0197 (3) | |
| C2 | 0.8224 (3) | 1.1378 (2) | 0.5204 (2) | 0.0243 (4) | |
| H2 | 0.8309 | 1.1419 | 0.4391 | 0.029* | |
| C4 | 0.7372 (4) | 0.9933 (2) | 0.6525 (2) | 0.0253 (4) | |
| H4 | 0.6868 | 0.8994 | 0.6605 | 0.030* | |
| C1 | 0.8826 (4) | 1.2725 (2) | 0.6330 (2) | 0.0282 (5) | |
| H1 | 0.9312 | 1.3682 | 0.6280 | 0.034* | |
| Co1A | 0.41776 (4) | 0.36866 (3) | 0.20745 (2) | 0.01763 (9) | |
| Cl2 | 0.08900 (9) | 0.38823 (6) | 0.08079 (5) | 0.02643 (13) | |
| Cl1 | 0.73776 (8) | 0.35040 (6) | 0.33499 (5) | 0.02677 (13) | |
| O1W | 0.5652 (3) | 0.33958 (19) | 0.04986 (14) | 0.0285 (3) | |
| H1WA | 0.7173 | 0.3570 | 0.0656 | 0.043* | |
| H1WB | 0.5254 | 0.3583 | −0.0197 | 0.043* | |
| O2W | 0.2585 (3) | 0.37067 (19) | 0.35990 (15) | 0.0296 (3) | |
| H2WA | 0.3037 | 0.3809 | 0.4362 | 0.044* | |
| H2WB | 0.1266 | 0.3867 | 0.3566 | 0.044* | |
| O3W | 0.2553 (3) | 0.12646 (16) | 0.12299 (15) | 0.0266 (3) | |
| H3WA | 0.1036 | 0.0973 | 0.1231 | 0.040* | |
| H3WB | 0.2462 | 0.0857 | 0.0400 | 0.040* | |
| O4W | 0.1925 (3) | 0.96192 (19) | 0.85528 (16) | 0.0363 (4) | |
| H4WA | 0.2306 | 1.0107 | 0.8093 | 0.054* | |
| H4WB | 0.2283 | 0.8803 | 0.8140 | 0.054* |
| N5 | 0.0273 (9) | 0.0172 (8) | 0.0214 (8) | 0.0062 (7) | 0.0062 (7) | 0.0075 (7) |
| C6 | 0.0169 (9) | 0.0168 (9) | 0.0209 (9) | 0.0050 (7) | 0.0041 (7) | 0.0066 (7) |
| N1 | 0.0271 (9) | 0.0175 (8) | 0.0273 (9) | 0.0062 (7) | 0.0015 (7) | −0.0020 (7) |
| N2 | 0.0221 (8) | 0.0155 (7) | 0.0161 (8) | 0.0052 (6) | 0.0026 (6) | 0.0040 (6) |
| N4 | 0.0280 (9) | 0.0182 (8) | 0.0191 (8) | 0.0063 (7) | 0.0049 (7) | 0.0071 (7) |
| C3 | 0.0140 (8) | 0.0161 (9) | 0.0216 (9) | 0.0056 (7) | 0.0001 (7) | 0.0053 (7) |
| C5 | 0.0356 (12) | 0.0251 (11) | 0.0225 (10) | 0.0083 (9) | 0.0043 (9) | 0.0045 (9) |
| N3 | 0.0235 (8) | 0.0161 (8) | 0.0173 (8) | 0.0058 (7) | 0.0045 (7) | 0.0054 (6) |
| C2 | 0.0254 (10) | 0.0200 (10) | 0.0282 (11) | 0.0077 (8) | 0.0066 (8) | 0.0107 (8) |
| C4 | 0.0319 (11) | 0.0189 (9) | 0.0231 (10) | 0.0082 (8) | 0.0042 (8) | 0.0075 (8) |
| C1 | 0.0247 (10) | 0.0163 (9) | 0.0405 (13) | 0.0064 (8) | 0.0065 (9) | 0.0093 (9) |
| Co1A | 0.02082 (15) | 0.01475 (14) | 0.01550 (15) | 0.00521 (11) | 0.00386 (11) | 0.00507 (11) |
| Cl2 | 0.0265 (3) | 0.0249 (3) | 0.0237 (3) | 0.0102 (2) | −0.0001 (2) | 0.0064 (2) |
| Cl1 | 0.0260 (3) | 0.0286 (3) | 0.0274 (3) | 0.0105 (2) | 0.0033 (2) | 0.0135 (2) |
| O1W | 0.0259 (8) | 0.0419 (9) | 0.0191 (7) | 0.0127 (7) | 0.0067 (6) | 0.0131 (7) |
| O2W | 0.0331 (9) | 0.0381 (9) | 0.0230 (8) | 0.0158 (7) | 0.0124 (7) | 0.0140 (7) |
| O3W | 0.0318 (8) | 0.0187 (7) | 0.0218 (7) | 0.0030 (6) | 0.0043 (6) | 0.0050 (6) |
| O4W | 0.0518 (11) | 0.0262 (8) | 0.0300 (9) | 0.0106 (8) | 0.0174 (8) | 0.0104 (7) |
| N5—N4 | 1.337 (2) | C4—H4 | 0.93 |
| N5—C6 | 1.340 (3) | C1—H1 | 0.93 |
| C6—N2 | 1.337 (2) | Co1A—O1W | 2.0738 (16) |
| C6—C3 | 1.467 (3) | Co1A—O2W | 2.0933 (16) |
| N1—C1 | 1.332 (3) | Co1A—O3W | 2.1071 (17) |
| N1—C5 | 1.339 (3) | Co1A—Cl1 | 2.4568 (9) |
| N1—H1A | 0.86 | Co1A—Cl2 | 2.5041 (9) |
| N2—N3 | 1.335 (2) | O1W—H1WA | 0.94 |
| N4—N3 | 1.323 (2) | O1W—H1WB | 0.88 |
| C3—C4 | 1.389 (3) | O2W—H2WA | 0.83 |
| C3—C2 | 1.393 (3) | O2W—H2WB | 0.91 |
| C5—C4 | 1.377 (3) | O3W—H3WA | 0.94 |
| C5—H5 | 0.93 | O3W—H3WB | 0.86 |
| N3—Co1A | 2.1153 (18) | O4W—H4WA | 0.83 |
| C2—C1 | 1.379 (3) | O4W—H4WB | 0.88 |
| C2—H2 | 0.93 | ||
| N4—N5—C6 | 104.78 (16) | C2—C1—H1 | 120.1 |
| N2—C6—N5 | 112.14 (17) | O1W—Co1A—O2W | 173.47 (6) |
| N2—C6—C3 | 124.23 (18) | O1W—Co1A—O3W | 87.50 (7) |
| N5—C6—C3 | 123.61 (17) | O2W—Co1A—O3W | 86.15 (7) |
| C1—N1—C5 | 122.93 (19) | O1W—Co1A—N3 | 92.57 (7) |
| C1—N1—H1A | 118.5 | O2W—Co1A—N3 | 93.86 (7) |
| C5—N1—H1A | 118.5 | O3W—Co1A—N3 | 176.39 (6) |
| N3—N2—C6 | 103.82 (16) | O1W—Co1A—Cl1 | 89.28 (5) |
| N3—N4—N5 | 108.68 (16) | O2W—Co1A—Cl1 | 89.42 (5) |
| C4—C3—C2 | 118.98 (19) | O3W—Co1A—Cl1 | 92.27 (6) |
| C4—C3—C6 | 120.36 (18) | N3—Co1A—Cl1 | 91.34 (6) |
| C2—C3—C6 | 120.65 (19) | O1W—Co1A—Cl2 | 91.67 (5) |
| N1—C5—C4 | 119.4 (2) | O2W—Co1A—Cl2 | 89.64 (5) |
| N1—C5—H5 | 120.3 | O3W—Co1A—Cl2 | 87.85 (6) |
| C4—C5—H5 | 120.3 | N3—Co1A—Cl2 | 88.54 (6) |
| N4—N3—N2 | 110.58 (15) | Cl1—Co1A—Cl2 | 179.04 (2) |
| N4—N3—Co1A | 123.34 (12) | Co1A—O1W—H1WA | 118.8 |
| N2—N3—Co1A | 125.83 (13) | Co1A—O1W—H1WB | 125.5 |
| C1—C2—C3 | 119.3 (2) | H1WA—O1W—H1WB | 108.6 |
| C1—C2—H2 | 120.4 | Co1A—O2W—H2WA | 131.9 |
| C3—C2—H2 | 120.4 | Co1A—O2W—H2WB | 120.0 |
| C5—C4—C3 | 119.6 (2) | H2WA—O2W—H2WB | 106.3 |
| C5—C4—H4 | 120.2 | Co1A—O3W—H3WA | 112.7 |
| C3—C4—H4 | 120.2 | Co1A—O3W—H3WB | 112.6 |
| N1—C1—C2 | 119.8 (2) | H3WA—O3W—H3WB | 100.6 |
| N1—C1—H1 | 120.1 | H4WA—O4W—H4WB | 98.3 |
| H··· | ||||
| O3W—H3WA···O4Wi | 0.95 | 1.92 | 2.858 (3) | 173 |
| O3W—H3WB···O4Wii | 0.86 | 1.91 | 2.761 (2) | 170 |
| O1W—H1WB···N4iii | 0.88 | 2.01 | 2.848 (2) | 157 |
| O2W—H2WA···N2iv | 0.83 | 2.24 | 2.999 (2) | 153 |
| O4W—H4WA···N5v | 0.83 | 2.11 | 2.935 (3) | 173 |
| N1—H1A···Cl2v | 0.86 | 2.41 | 3.180 (2) | 149 |
| O1W—H1WA···Cl2vi | 0.94 | 2.32 | 3.254 (2) | 174 |
| O2W—H2WB···Cl1vii | 0.91 | 2.42 | 3.300 (2) | 163 |
| O4W—H4WB···Cl1iv | 0.88 | 2.38 | 3.249 (2) | 168 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3 | 0.95 | 1.92 | 2.858 (3) | 173 |
| O3 | 0.86 | 1.91 | 2.761 (2) | 170 |
| O1 | 0.88 | 2.01 | 2.848 (2) | 157 |
| O2 | 0.83 | 2.24 | 2.999 (2) | 153 |
| O4 | 0.83 | 2.11 | 2.935 (3) | 173 |
| N1—H1 | 0.86 | 2.41 | 3.180 (2) | 149 |
| O1 | 0.94 | 2.32 | 3.254 (2) | 174 |
| O2 | 0.91 | 2.42 | 3.300 (2) | 163 |
| O4 | 0.88 | 2.38 | 3.249 (2) | 168 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .