Literature DB >> 21583317

Bis(ethanol-κO)bis-(pyridine-3-carb-aldehyde-κN thio-semicarbazone)bis-(thio-cyanato-κN)iron(II)-pyridine-3-carbaldehyde thio-semicarbazone (1/2).

Shao-Mei Wang1.   

Abstract

The crystal structure of the title Fe(II) complex, [Fe(NCS)(2)(C(7)H(8)N(4)S)(2)(CH(3)CH(2)OH)(2)]·2C(7)H(8)N(4)S, based on the Schiff base ligand pyridine-3-carbaldehyde thio-semicarbazone (pct), results from the cocrystallization of an Fe(II) coordination compound together with two of the pct ligands. The complex unit is mononuclear, with the central Fe(II) ion located on a crystallographic centre of inversion and coordinated by four N atoms from two pct ligands and two thio-cyanate anions. The slightly distorted octa-hedral coordination is completed by two O atoms from ethanol mol-ecules. The crystal packing is accomplished inter-molecular N-H⋯S hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583317      PMCID: PMC2977344          DOI: 10.1107/S1600536809024076

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of metal complexes of Schiff base ligands synthesized by condensation of pyridine-3-carbaldehyde and amino compounds, see: Brook et al. (2000 ▶); Deng et al. (2007 ▶); Garbelini et al. (2008 ▶); Kowol et al. (2007 ▶); Zhong et al. (2007 ▶). For the corresponding Mn(II) complex of pyridine-3-carbaldehyde thio­semicarbazone, see: Li et al. (2006 ▶).

Experimental

Crystal data

[Fe(NCS)2(C7H8N4S)2(C2H6O)2]·2C7H8N4S M = 985.08 Triclinic, a = 8.916 (4) Å b = 9.556 (5) Å c = 14.538 (7) Å α = 87.341 (8)° β = 88.191 (8)° γ = 69.604 (8)° V = 1160 (1) Å3 Z = 1 Mo Kα radiation μ = 0.65 mm−1 T = 173 K 0.32 × 0.26 × 0.22 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.819, T max = 0.871 8300 measured reflections 4037 independent reflections 2953 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.134 S = 1.01 4037 reflections 282 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809024076/im2122sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024076/im2122Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Fe(NCS)2(C7H8N4S)2(C2H6O)2]·2C7H8N4SZ = 1
Mr = 985.08F(000) = 512
Triclinic, P1Dx = 1.411 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.916 (4) ÅCell parameters from 3773 reflections
b = 9.556 (5) Åθ = 2.3–26.9°
c = 14.538 (7) ŵ = 0.65 mm1
α = 87.341 (8)°T = 173 K
β = 88.191 (8)°Block, dark green
γ = 69.604 (8)°0.32 × 0.26 × 0.22 mm
V = 1160 (1) Å3
Bruker SMART CCD area-detector diffractometer4037 independent reflections
Radiation source: fine-focus sealed tube2953 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 25.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.819, Tmax = 0.871k = −11→11
8300 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.082P)2 + 0.3403P] where P = (Fo2 + 2Fc2)/3
4037 reflections(Δ/σ)max = 0.001
282 parametersΔρmax = 0.43 e Å3
1 restraintΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Fe10.50000.00000.00000.0416 (2)
N10.2848 (3)0.1196 (3)0.09806 (16)0.0410 (6)
N20.1975 (3)−0.0995 (3)0.33648 (15)0.0389 (6)
N30.1640 (3)−0.1698 (3)0.41443 (16)0.0413 (6)
H30.0676−0.13820.43970.050*
N40.4186 (3)−0.3344 (3)0.40767 (19)0.0659 (9)
H4A0.4316−0.28850.35570.079*
H4B0.4981−0.41120.42980.079*
N50.5606 (3)−0.2022 (3)0.08302 (19)0.0536 (7)
C120.7900 (4)0.3134 (4)0.8792 (2)0.0604 (9)
H120.69440.33310.91500.072*
N70.8316 (3)0.5754 (3)0.64455 (16)0.0424 (6)
N80.8582 (3)0.6617 (3)0.57213 (17)0.0453 (6)
H80.95460.64030.54740.054*
N90.5924 (3)0.7961 (3)0.5738 (2)0.0652 (8)
H9A0.58140.73160.61630.078*
H9B0.50800.87110.55470.078*
O10.6741 (3)0.0634 (3)0.07601 (15)0.0541 (6)
S10.24701 (9)−0.36692 (9)0.55347 (5)0.0500 (2)
S20.64184 (10)−0.43494 (10)0.21504 (7)0.0632 (3)
S30.76674 (9)0.89666 (9)0.45668 (6)0.0525 (3)
C10.1770 (4)0.2554 (3)0.0754 (2)0.0457 (7)
H10.19620.30760.02180.055*
C20.0403 (4)0.3210 (3)0.1271 (2)0.0471 (7)
H2−0.03320.41650.10920.057*
C30.0117 (3)0.2462 (3)0.20499 (19)0.0416 (7)
H3A−0.08150.29020.24180.050*
C40.1196 (3)0.1064 (3)0.22943 (18)0.0354 (6)
C50.2540 (3)0.0486 (3)0.17329 (19)0.0405 (7)
H50.3286−0.04730.18950.049*
C60.0921 (3)0.0255 (3)0.3116 (2)0.0409 (7)
H6−0.00390.06530.34680.049*
C70.2808 (3)−0.2882 (3)0.4521 (2)0.0424 (7)
C80.5957 (3)−0.2995 (3)0.1376 (2)0.0409 (7)
C90.6438 (4)0.1960 (4)0.1234 (2)0.0602 (9)
H9C0.55070.27510.09560.072*
H9D0.73750.22860.11550.072*
C100.6107 (5)0.1792 (5)0.2242 (3)0.0809 (13)
H10A0.51380.15350.23270.121*
H10B0.59520.27350.25380.121*
H10C0.70150.09970.25210.121*
C110.9244 (4)0.1953 (4)0.9025 (2)0.0577 (9)
H110.92010.13500.95570.069*
N61.0609 (3)0.1611 (3)0.85410 (18)0.0512 (7)
C131.0645 (4)0.2479 (3)0.7803 (2)0.0457 (7)
H131.16130.22440.74530.055*
C140.9344 (3)0.3714 (3)0.7514 (2)0.0404 (7)
C150.7945 (4)0.4035 (4)0.8032 (2)0.0533 (8)
H150.70260.48670.78650.064*
C160.9506 (3)0.4637 (3)0.6721 (2)0.0419 (7)
H161.05080.44060.64060.050*
C170.7345 (3)0.7807 (3)0.53873 (19)0.0417 (7)
H170.747 (3)−0.006 (3)0.099 (2)0.067 (12)*
U11U22U33U12U13U23
Fe10.0384 (3)0.0424 (4)0.0381 (4)−0.0086 (3)0.0034 (2)0.0106 (3)
N10.0387 (13)0.0410 (14)0.0383 (13)−0.0092 (11)0.0062 (10)0.0063 (11)
N20.0372 (13)0.0431 (14)0.0345 (13)−0.0130 (11)0.0060 (10)0.0047 (11)
N30.0344 (13)0.0445 (14)0.0391 (13)−0.0085 (11)0.0080 (10)0.0102 (11)
N40.0418 (15)0.073 (2)0.0584 (18)0.0057 (14)0.0150 (13)0.0275 (15)
N50.0464 (16)0.0499 (16)0.0545 (16)−0.0076 (12)0.0044 (12)0.0220 (14)
C120.0473 (19)0.075 (2)0.058 (2)−0.0233 (18)0.0052 (16)0.0173 (18)
N70.0404 (14)0.0469 (15)0.0407 (14)−0.0173 (12)−0.0005 (11)0.0076 (11)
N80.0379 (13)0.0464 (15)0.0485 (15)−0.0129 (11)0.0044 (11)0.0104 (12)
N90.0362 (15)0.071 (2)0.0734 (19)−0.0046 (13)0.0092 (13)0.0306 (16)
O10.0492 (14)0.0503 (14)0.0551 (14)−0.0065 (11)−0.0113 (11)−0.0028 (11)
S10.0399 (4)0.0577 (5)0.0429 (5)−0.0078 (4)0.0058 (3)0.0164 (4)
S20.0511 (5)0.0507 (5)0.0736 (6)−0.0045 (4)0.0042 (4)0.0327 (4)
S30.0410 (4)0.0548 (5)0.0520 (5)−0.0077 (4)0.0059 (4)0.0184 (4)
C10.0456 (17)0.0447 (17)0.0418 (17)−0.0112 (14)0.0055 (13)0.0094 (14)
C20.0442 (17)0.0364 (16)0.0482 (18)0.0007 (13)0.0010 (14)0.0061 (14)
C30.0349 (15)0.0430 (17)0.0404 (16)−0.0061 (13)0.0061 (12)−0.0018 (13)
C40.0319 (14)0.0388 (15)0.0347 (15)−0.0115 (12)0.0024 (11)−0.0008 (12)
C50.0370 (15)0.0333 (15)0.0431 (16)−0.0036 (12)0.0037 (12)0.0090 (13)
C60.0350 (15)0.0429 (17)0.0403 (16)−0.0090 (13)0.0086 (12)0.0013 (13)
C70.0378 (16)0.0458 (17)0.0401 (16)−0.0114 (13)0.0033 (13)0.0044 (13)
C80.0312 (14)0.0402 (17)0.0454 (17)−0.0063 (12)0.0083 (12)0.0018 (14)
C90.066 (2)0.062 (2)0.059 (2)−0.0292 (19)−0.0024 (17)−0.0029 (18)
C100.103 (3)0.092 (3)0.063 (3)−0.054 (3)0.015 (2)−0.007 (2)
C110.060 (2)0.064 (2)0.053 (2)−0.0279 (18)−0.0082 (17)0.0184 (17)
N60.0501 (16)0.0493 (16)0.0521 (16)−0.0155 (13)−0.0111 (13)0.0132 (13)
C130.0415 (17)0.0480 (18)0.0475 (18)−0.0159 (14)−0.0004 (13)0.0023 (14)
C140.0389 (16)0.0409 (17)0.0428 (16)−0.0161 (13)−0.0033 (13)0.0042 (13)
C150.0388 (17)0.056 (2)0.060 (2)−0.0117 (15)−0.0008 (15)0.0154 (16)
C160.0389 (16)0.0433 (17)0.0438 (17)−0.0157 (14)0.0018 (13)0.0029 (13)
C170.0406 (16)0.0466 (17)0.0365 (16)−0.0139 (13)0.0010 (13)0.0025 (13)
Fe1—N5i2.140 (3)S1—C71.690 (3)
Fe1—N52.140 (3)S2—C81.623 (3)
Fe1—O1i2.196 (2)S3—C171.677 (3)
Fe1—O12.196 (2)C1—C21.377 (4)
Fe1—N12.339 (2)C1—H10.9500
Fe1—N1i2.339 (2)C2—C31.375 (4)
N1—C51.332 (3)C2—H20.9500
N1—C11.352 (4)C3—C41.385 (4)
N2—C61.280 (4)C3—H3A0.9500
N2—N31.368 (3)C4—C51.388 (4)
N3—C71.350 (4)C4—C61.453 (4)
N3—H30.8800C5—H50.9500
N4—C71.312 (4)C6—H60.9500
N4—H4A0.8800C9—C101.498 (5)
N4—H4B0.8800C9—H9C0.9900
N5—C81.156 (4)C9—H9D0.9900
C12—C111.368 (5)C10—H10A0.9800
C12—C151.377 (4)C10—H10B0.9800
C12—H120.9500C10—H10C0.9800
N7—C161.274 (4)C11—N61.332 (4)
N7—N81.373 (3)C11—H110.9500
N8—C171.361 (4)N6—C131.332 (4)
N8—H80.8800C13—C141.395 (4)
N9—C171.312 (4)C13—H130.9500
N9—H9A0.8800C14—C151.383 (4)
N9—H9B0.8800C14—C161.453 (4)
O1—C91.408 (4)C15—H150.9500
O1—H170.816 (10)C16—H160.9500
N5i—Fe1—N5180.00 (14)C2—C3—H3A120.2
N5i—Fe1—O1i88.99 (10)C4—C3—H3A120.2
N5—Fe1—O1i91.01 (10)C3—C4—C5117.5 (2)
N5i—Fe1—O191.01 (10)C3—C4—C6120.6 (2)
N5—Fe1—O188.99 (10)C5—C4—C6121.9 (3)
O1i—Fe1—O1180.00 (14)N1—C5—C4123.9 (3)
N5i—Fe1—N188.53 (9)N1—C5—H5118.0
N5—Fe1—N191.47 (9)C4—C5—H5118.0
O1i—Fe1—N185.58 (9)N2—C6—C4119.9 (2)
O1—Fe1—N194.42 (9)N2—C6—H6120.0
N5i—Fe1—N1i91.47 (9)C4—C6—H6120.0
N5—Fe1—N1i88.53 (9)N4—C7—N3116.9 (3)
O1i—Fe1—N1i94.42 (9)N4—C7—S1123.1 (2)
O1—Fe1—N1i85.58 (9)N3—C7—S1119.9 (2)
N1—Fe1—N1i180.00 (12)N5—C8—S2179.0 (3)
C5—N1—C1117.4 (2)O1—C9—C10113.3 (3)
C5—N1—Fe1120.69 (18)O1—C9—H9C108.9
C1—N1—Fe1121.52 (18)C10—C9—H9C108.9
C6—N2—N3116.9 (2)O1—C9—H9D108.9
C7—N3—N2119.2 (2)C10—C9—H9D108.9
C7—N3—H3120.4H9C—C9—H9D107.7
N2—N3—H3120.4C9—C10—H10A109.5
C7—N4—H4A120.0C9—C10—H10B109.5
C7—N4—H4B120.0H10A—C10—H10B109.5
H4A—N4—H4B120.0C9—C10—H10C109.5
C8—N5—Fe1170.5 (3)H10A—C10—H10C109.5
C11—C12—C15119.4 (3)H10B—C10—H10C109.5
C11—C12—H12120.3N6—C11—C12122.9 (3)
C15—C12—H12120.3N6—C11—H11118.5
C16—N7—N8117.2 (2)C12—C11—H11118.5
C17—N8—N7119.6 (2)C11—N6—C13117.4 (3)
C17—N8—H8120.2N6—C13—C14123.9 (3)
N7—N8—H8120.2N6—C13—H13118.1
C17—N9—H9A120.0C14—C13—H13118.1
C17—N9—H9B120.0C15—C14—C13117.1 (3)
H9A—N9—H9B120.0C15—C14—C16122.6 (3)
C9—O1—Fe1126.7 (2)C13—C14—C16120.3 (3)
C9—O1—H17112 (3)C12—C15—C14119.2 (3)
Fe1—O1—H17115 (3)C12—C15—H15120.4
N1—C1—C2122.6 (3)C14—C15—H15120.4
N1—C1—H1118.7N7—C16—C14120.5 (3)
C2—C1—H1118.7N7—C16—H16119.7
C3—C2—C1119.1 (3)C14—C16—H16119.7
C3—C2—H2120.5N9—C17—N8116.1 (3)
C1—C2—H2120.5N9—C17—S3123.4 (2)
C2—C3—C4119.6 (3)N8—C17—S3120.5 (2)
D—H···AD—HH···AD···AD—H···A
N9—H9B···S3ii0.882.673.533 (3)165
N4—H4B···S1iii0.882.523.373 (3)164
N4—H4A···S20.882.803.360 (3)123
N3—H3···S3iv0.882.593.414 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N9—H9B⋯S3i0.882.673.533 (3)165
N4—H4B⋯S1ii0.882.523.373 (3)164
N4—H4A⋯S20.882.803.360 (3)123
N3—H3⋯S3iii0.882.593.414 (3)156

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Coordination chemistry of verdazyl radicals: group 12 metal (Zn, Cd, Hg) complexes of 1,4,5,6-tetrahydro-2,4-dimethyl-6-(2 pyridiyl)-1,2,4,5-tetrazin -3(2H)-one (pvdH3) and 1,5-dimethyl-3-(2 pyridil)-6-oxoverdazyl (pvd).

Authors:  D J Brook; S Fornell; J E Stevens; B Noll; T H Koch; W Eisfeld
Journal:  Inorg Chem       Date:  2000-02-07       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Effect of metal ion complexation and chalcogen donor identity on the antiproliferative activity of 2-acetylpyridine N,N-dimethyl(chalcogen)semicarbazones.

Authors:  Christian R Kowol; Rene Eichinger; Michael A Jakupec; Markus Galanski; Vladimir B Arion; Bernhard K Keppler
Journal:  J Inorg Biochem       Date:  2007-07-31       Impact factor: 4.155

  3 in total

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