Literature DB >> 21583309

Poly[[μ-1,4-bis-(imidazol-1-ylmeth-yl)benzene]bis-(μ(4)-cyclo-hexane-1,4-dicarboxyl-ato)dinickel(II)].

Bing-Bing Li, Gai-Xia Fang, Xiao-Na Ji, Bo Xiao, Edward R T Tiekink.   

Abstract

The structure of the polymeric title compound, [Ni(2)(C(8)H(10)O(4))(2)(C(14)H(14)N(4))](n), features a five-coordinate Ni(II) centre defined by four carboxyl-ate O atoms from two different cyclo-hexane-1,4-dicarboxyl-ate (chdc) ligands and an N atom from one end of a 1,4-bis-(imidazol-1-ylmeth-yl)benzene (1,4-bix) mol-ecule. The NO(4) coordination geometry is distorted square-pyramidal with the N atom in the apical position. Each end of the chdc ligand links pairs of Ni(II) atoms into a paddle-wheel assembly, i.e. Ni(2)(O(2)CR')(4). These are connected into rows owing to the bridging nature of the chdc ligands, and the rows are connected into a two-dimensional grid via the 1,4-bix ligands. The 1,4-bix ligand, which is disposed about a centre of inversion, is disorderd. Two positions of equal occupancy were discerned for the -H(2)C(C(6)H(4))CH(2)- residue.

Entities:  

Year:  2009        PMID: 21583309      PMCID: PMC2977293          DOI: 10.1107/S1600536809029249

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to coordination polymers, see: Batten & Robson (1998 ▶); Kim & Jung (2002 ▶); Yang et al. (2008 ▶). For a related Ni(II) structure, see: Lee et al. (2003 ▶).

Experimental

Crystal data

[Ni2(C8H10O4)2(C14H14N4)] M = 696.03 Triclinic, a = 8.4966 (6) Å b = 8.8076 (6) Å c = 10.7327 (8) Å α = 93.567 (6)° β = 100.608 (6)° γ = 105.807 (6)° V = 754.22 (9) Å3 Z = 1 Mo Kα radiation μ = 1.31 mm−1 T = 293 K 0.31 × 0.22 × 0.18 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.557, T max = 0.791 6115 measured reflections 2640 independent reflections 2287 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.139 S = 1.11 2640 reflections 224 parameters 36 restraints H-atom parameters constrained Δρmax = 1.30 e Å−3 Δρmin = −1.25 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809029249/ng2618sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029249/ng2618Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni2(C8H10O4)2(C14H14N4)]Z = 1
Mr = 696.03F(000) = 362
Triclinic, P1Dx = 1.532 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4966 (6) ÅCell parameters from 3051 reflections
b = 8.8076 (6) Åθ = 3.0–26.4°
c = 10.7327 (8) ŵ = 1.31 mm1
α = 93.567 (6)°T = 293 K
β = 100.608 (6)°Block, green
γ = 105.807 (6)°0.31 × 0.22 × 0.18 mm
V = 754.22 (9) Å3
Bruker SMART APEX diffractometer2640 independent reflections
Radiation source: fine-focus sealed tube2287 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 25.0°, θmin = 4.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.557, Tmax = 0.791k = −10→10
6115 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0653P)2 + 2.0659P] where P = (Fo2 + 2Fc2)/3
2640 reflections(Δ/σ)max < 0.001
224 parametersΔρmax = 1.30 e Å3
36 restraintsΔρmin = −1.25 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Ni1.02456 (6)0.46763 (6)0.61988 (5)0.0239 (2)
O10.9631 (4)0.6690 (4)0.6585 (3)0.0338 (7)
O20.9113 (4)0.7154 (4)0.4545 (3)0.0335 (7)
O30.2691 (4)0.5884 (4)0.6790 (3)0.0397 (8)
O40.2180 (4)0.6331 (4)0.4772 (3)0.0418 (8)
N10.9779 (5)0.3729 (5)0.7773 (4)0.0437 (8)
C10.9120 (5)0.7449 (5)0.5710 (4)0.0264 (9)
C20.8505 (5)0.8851 (5)0.6088 (4)0.0297 (10)
H20.94730.98010.62640.036*
C30.7810 (5)0.8673 (6)0.7302 (4)0.0358 (11)
H3A0.86160.84250.79620.043*
H3B0.76550.96750.75970.043*
C40.6153 (5)0.7376 (6)0.7096 (4)0.0323 (10)
H4A0.57400.73290.78820.039*
H4B0.63190.63560.68700.039*
C50.4869 (5)0.7705 (5)0.6037 (4)0.0245 (9)
H50.47630.87500.63050.029*
C60.5532 (5)0.7863 (6)0.4803 (4)0.0298 (10)
H6A0.56670.68540.45010.036*
H6B0.47260.81260.41520.036*
C70.7204 (5)0.9147 (6)0.5016 (5)0.0340 (11)
H7A0.70401.01720.52260.041*
H7B0.76200.91790.42310.041*
C80.3134 (5)0.6545 (5)0.5852 (4)0.0287 (10)
C91.0595 (8)0.2825 (7)0.8462 (5)0.0573 (9)
H91.14990.25200.82740.069*
C100.9880 (8)0.2448 (7)0.9457 (6)0.0573 (9)
H101.01910.18241.00700.069*
C110.8601 (8)0.3888 (7)0.8366 (5)0.0573 (9)
H110.78420.44490.80980.069*
N20.8646 (6)0.3123 (5)0.9419 (4)0.0437 (8)0.50
C120.782 (2)0.287 (2)1.0446 (17)0.047 (4)0.50
H12A0.73090.37191.05580.057*0.50
H12B0.86380.29311.12220.057*0.50
C130.645 (2)0.125 (2)1.025 (2)0.037 (4)0.50
C140.653 (4)0.031 (4)1.109 (3)0.063 (7)0.50
H140.74480.03291.17170.075*0.50
C150.520 (3)0.084 (3)0.916 (2)0.050 (5)0.50
H150.54600.13670.84690.060*0.50
N2'0.8646 (6)0.3123 (5)0.9419 (4)0.0437 (8)0.50
C12'0.716 (2)0.324 (2)1.0150 (16)0.059 (5)0.50
H12C0.76360.36491.10410.071*0.50
H12D0.65980.39750.97680.071*0.50
C13'0.594 (3)0.164 (2)1.005 (2)0.045 (5)0.50
C14'0.606 (3)0.063 (4)1.104 (3)0.057 (8)0.50
H14'0.66700.11561.18320.068*0.50
C15'0.464 (3)0.114 (3)0.898 (3)0.055 (5)0.50
H15'0.42710.17660.83970.066*0.50
U11U22U33U12U13U23
Ni0.0223 (3)0.0278 (3)0.0238 (3)0.0071 (2)0.0085 (2)0.0080 (2)
O10.0353 (17)0.0345 (18)0.0354 (17)0.0157 (14)0.0079 (14)0.0050 (14)
O20.0375 (18)0.0329 (18)0.0368 (18)0.0149 (14)0.0161 (14)0.0087 (14)
O30.0254 (16)0.043 (2)0.049 (2)0.0002 (14)0.0171 (15)0.0070 (16)
O40.0239 (16)0.044 (2)0.049 (2)0.0069 (15)−0.0055 (15)−0.0014 (16)
N10.0501 (18)0.0403 (17)0.0287 (15)−0.0138 (14)0.0191 (13)0.0039 (13)
C10.0152 (18)0.024 (2)0.039 (3)0.0019 (16)0.0096 (17)0.0062 (19)
C20.0181 (19)0.022 (2)0.047 (3)0.0016 (17)0.0077 (18)0.0006 (19)
C30.024 (2)0.046 (3)0.033 (2)0.010 (2)−0.0002 (18)−0.010 (2)
C40.024 (2)0.049 (3)0.026 (2)0.012 (2)0.0081 (18)0.010 (2)
C50.0177 (19)0.026 (2)0.031 (2)0.0065 (17)0.0069 (17)0.0043 (17)
C60.024 (2)0.038 (3)0.030 (2)0.0124 (19)0.0068 (17)0.0096 (19)
C70.028 (2)0.034 (3)0.050 (3)0.014 (2)0.021 (2)0.017 (2)
C80.020 (2)0.028 (2)0.041 (3)0.0090 (18)0.0101 (19)0.0035 (19)
C90.065 (2)0.050 (2)0.0432 (18)−0.0045 (16)0.0031 (16)0.0189 (15)
C100.065 (2)0.050 (2)0.0432 (18)−0.0045 (16)0.0031 (16)0.0189 (15)
C110.065 (2)0.050 (2)0.0432 (18)−0.0045 (16)0.0031 (16)0.0189 (15)
N20.0501 (18)0.0403 (17)0.0287 (15)−0.0138 (14)0.0191 (13)0.0039 (13)
C120.048 (10)0.042 (8)0.041 (8)−0.010 (6)0.020 (7)0.003 (6)
C130.041 (9)0.033 (10)0.036 (8)0.002 (6)0.021 (7)−0.006 (6)
C140.058 (15)0.064 (14)0.065 (11)−0.004 (10)0.041 (10)0.009 (10)
C150.057 (14)0.056 (11)0.039 (9)0.008 (9)0.022 (10)0.013 (8)
N2'0.0501 (18)0.0403 (17)0.0287 (15)−0.0138 (14)0.0191 (13)0.0039 (13)
C12'0.070 (13)0.054 (11)0.040 (10)−0.020 (8)0.044 (9)−0.016 (7)
C13'0.064 (13)0.031 (9)0.039 (9)−0.007 (7)0.042 (10)−0.001 (7)
C14'0.050 (13)0.071 (15)0.035 (9)−0.013 (10)0.030 (9)−0.026 (9)
C15'0.047 (12)0.058 (13)0.056 (12)0.001 (8)0.022 (10)0.010 (8)
Ni—N11.987 (4)C7—H7A0.9700
Ni—O2i2.003 (3)C7—H7B0.9700
Ni—O3ii2.019 (3)C9—C101.339 (8)
Ni—O12.021 (3)C9—H90.9300
Ni—O4iii2.054 (3)C10—N21.334 (8)
Ni—Nii2.6529 (10)C10—N2'1.334 (8)
O1—C11.266 (5)C10—H100.9300
O2—C11.260 (5)C11—N21.352 (7)
O2—Nii2.003 (3)C11—N2'1.352 (7)
O3—C81.260 (6)C11—H110.9300
O3—Niiv2.019 (3)N2—C121.409 (18)
O4—C81.256 (6)C12—C131.55 (3)
O4—Niiii2.054 (3)C12—H12A0.9700
N1—C111.314 (8)C12—H12B0.9700
N1—C91.360 (8)C13—C141.27 (5)
C1—C21.526 (6)C13—C151.38 (3)
C2—C31.526 (6)C14—C15v1.50 (4)
C2—C71.530 (6)C14—H140.9300
C2—H20.9800C15—C14v1.50 (4)
C3—C41.521 (6)C15—H150.9300
C3—H3A0.9700N2'—C12'1.626 (16)
C3—H3B0.9700C12'—C13'1.49 (3)
C4—C51.524 (6)C12'—H12C0.9700
C4—H4A0.9700C12'—H12D0.9700
C4—H4B0.9700C13'—C15'1.39 (4)
C5—C81.517 (6)C13'—C14'1.43 (5)
C5—C61.531 (6)C14'—C15'v1.50 (5)
C5—H50.9800C14'—H14'0.9300
C6—C71.525 (6)C15'—C14'v1.50 (5)
C6—H6A0.9700C15'—H15'0.9300
C6—H6B0.9700
N1—Ni—O2i95.33 (16)C6—C7—H7B109.2
N1—Ni—O3ii100.50 (16)C2—C7—H7B109.2
O2i—Ni—O3ii89.68 (14)H7A—C7—H7B107.9
N1—Ni—O196.72 (16)O4—C8—O3122.9 (4)
O2i—Ni—O1167.83 (12)O4—C8—C5118.1 (4)
O3ii—Ni—O189.76 (14)O3—C8—C5119.0 (4)
N1—Ni—O4iii92.29 (16)C10—C9—N1108.5 (6)
O2i—Ni—O4iii89.74 (14)C10—C9—H9125.7
O3ii—Ni—O4iii167.19 (14)N1—C9—H9125.7
O1—Ni—O4iii88.12 (13)N2—C10—N20.00 (18)
N1—Ni—Nii159.62 (13)N2—C10—C9108.3 (5)
O2i—Ni—Nii83.45 (9)N2'—C10—C9108.3 (5)
O3ii—Ni—Nii99.83 (10)N2—C10—H10125.9
O1—Ni—Nii84.67 (9)N2'—C10—H10125.9
O4iii—Ni—Nii67.40 (10)C9—C10—H10125.9
C1—O1—Ni122.0 (3)N1—C11—N2110.5 (6)
C1—O2—Nii124.7 (3)N1—C11—N2'110.5 (6)
C8—O3—Niiv106.2 (3)N2—C11—N20.0 (3)
C8—O4—Niiii143.4 (3)N1—C11—H11124.7
C11—N1—C9106.2 (5)N2—C11—H11124.7
C11—N1—Ni125.6 (4)N2'—C11—H11124.7
C9—N1—Ni128.2 (4)C10—N2—C11106.4 (5)
O2—C1—O1124.8 (4)C10—N2—C12114.4 (8)
O2—C1—C2117.1 (4)C11—N2—C12139.1 (8)
O1—C1—C2118.1 (4)N2—C12—C13112.9 (15)
C1—C2—C3112.5 (4)N2—C12—H12A109.0
C1—C2—C7112.5 (4)C13—C12—H12A109.0
C3—C2—C7109.7 (3)N2'—C12—H12B109.0
C1—C2—H2107.3C13—C12—H12B109.0
C3—C2—H2107.3H12A—C12—H12B107.8
C7—C2—H2107.3C14—C13—C15121 (2)
C4—C3—C2112.4 (4)C14—C13—C12119 (2)
C4—C3—H3A109.1C15—C13—C12120.2 (18)
C2—C3—H3A109.1C13—C14—C15v105 (3)
C4—C3—H3B109.1C13—C14—H14127.7
C2—C3—H3B109.1C15v—C14—H14127.7
H3A—C3—H3B107.9C13—C15—C14v131 (3)
C3—C4—C5110.5 (4)C13—C15—H15114.6
C3—C4—H4A109.6C14v—C15—H15114.6
C5—C4—H4A109.6C10—N2—C11106.4 (5)
C3—C4—H4B109.6C10—N2—C12'141.6 (8)
C5—C4—H4B109.6C11—N2—C12'111.8 (9)
H4A—C4—H4B108.1C13'—C12'—N2109.7 (13)
C8—C5—C4113.8 (4)C13'—C12'—H12C109.7
C8—C5—C6113.3 (4)N2'—C12'—H12C109.7
C4—C5—C6110.4 (3)C13'—C12'—H12D109.7
C8—C5—H5106.2N2'—C12'—H12D109.7
C4—C5—H5106.2H12C—C12'—H12D108.2
C6—C5—H5106.2C15'—C13'—C14'119 (2)
C7—C6—C5111.1 (4)C15'—C13'—C12'118.9 (18)
C7—C6—H6A109.4C14'—C13'—C12'122 (2)
C5—C6—H6A109.4C13'—C14'—C15'v131 (2)
C7—C6—H6B109.4C13'—C14'—H14'114.4
C5—C6—H6B109.4C15'v—C14'—H14'114.4
H6A—C6—H6B108.0C13'—C15'—C14'v106 (2)
C6—C7—C2112.0 (4)C13'—C15'—H15'126.8
C6—C7—H7A109.2C14'v—C15'—H15'126.8
C2—C7—H7A109.2
N1—Ni—O1—C1−153.4 (3)C11—N1—C9—C100.4 (6)
O2i—Ni—O1—C118.7 (8)Ni—N1—C9—C10179.5 (4)
O3ii—Ni—O1—C1106.0 (3)N1—C9—C10—N2−1.1 (7)
O4iii—Ni—O1—C1−61.3 (3)N1—C9—C10—N2'−1.1 (7)
Nii—Ni—O1—C16.1 (3)C9—N1—C11—N20.4 (6)
O2i—Ni—N1—C11−144.6 (5)Ni—N1—C11—N2−178.7 (3)
O3ii—Ni—N1—C11124.7 (5)C9—N1—C11—N2'0.4 (6)
O1—Ni—N1—C1133.7 (5)Ni—N1—C11—N2'−178.7 (3)
O4iii—Ni—N1—C11−54.7 (5)N2—C10—N2—C110(100)
Nii—Ni—N1—C11−59.1 (7)C9—C10—N2—C111.3 (7)
O2i—Ni—N1—C936.5 (5)N2—C10—N2'—C120(100)
O3ii—Ni—N1—C9−54.2 (5)C9—C10—N2'—C12−177.6 (9)
O1—Ni—N1—C9−145.2 (5)N1—C11—N2—C10−1.1 (6)
O4iii—Ni—N1—C9126.4 (5)N2—C11—N2—C100(100)
Nii—Ni—N1—C9122.0 (5)N1—C11—N2'—C12177.4 (12)
Nii—O2—C1—O14.6 (6)N2—C11—N2'—C120(100)
Nii—O2—C1—C2−177.0 (3)C10—N2—C12—C13−82.7 (13)
Ni—O1—C1—O2−8.1 (6)C11—N2—C12—C1398.9 (15)
Ni—O1—C1—C2173.4 (3)N2—C12—C13—C14124 (2)
O2—C1—C2—C3153.7 (4)N2—C12—C13—C15−55 (2)
O1—C1—C2—C3−27.8 (5)C15—C13—C14—C15v−19 (3)
O2—C1—C2—C729.2 (5)C12—C13—C14—C15v162.1 (17)
O1—C1—C2—C7−152.3 (4)C14—C13—C15—C14v24 (4)
C1—C2—C3—C4−70.5 (5)C12—C13—C15—C14v−157 (2)
C7—C2—C3—C455.6 (5)N2—C10—N2—C110(100)
C2—C3—C4—C5−57.3 (5)C9—C10—N2—C111.3 (7)
C3—C4—C5—C8−174.8 (4)N2—C10—N2'—C12'0(100)
C3—C4—C5—C656.5 (5)C9—C10—N2'—C12'176.8 (11)
C8—C5—C6—C7174.9 (3)N1—C11—N2—C10−1.1 (6)
C4—C5—C6—C7−56.2 (5)N2—C11—N2—C100(100)
C5—C6—C7—C255.8 (5)N1—C11—N2'—C12'−178.1 (8)
C1—C2—C7—C671.4 (5)N2—C11—N2'—C12'0(100)
C3—C2—C7—C6−54.6 (5)C10—N2'—C12'—C13'−62.7 (19)
Niiii—O4—C8—O38.4 (8)C11—N2'—C12'—C13'112.6 (15)
Niiii—O4—C8—C5−169.0 (3)N2'—C12'—C13'—C15'−86 (2)
Niiv—O3—C8—O4−4.3 (5)N2'—C12'—C13'—C14'94.8 (19)
Niiv—O3—C8—C5173.0 (3)C15'—C13'—C14'—C15'v22 (4)
C4—C5—C8—O4−154.6 (4)C12'—C13'—C14'—C15'v−159 (2)
C6—C5—C8—O4−27.4 (5)C14'—C13'—C15'—C14'v−17 (3)
C4—C5—C8—O327.9 (5)C12'—C13'—C15'—C14'v163.9 (16)
C6—C5—C8—O3155.1 (4)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Conformation change of the cyclohexanedicarboxylate ligand toward 2D and 3D La(III)-organic coordination networks.

Authors:  YooJin Kim; Duk-Young Jung
Journal:  Chem Commun (Camb)       Date:  2002-04-21       Impact factor: 6.222

3.  Unusual parallel and inclined interlocking modes in polyrotaxane-like metal-organic frameworks.

Authors:  Jin Yang; Jian-Fang Ma; Stuart R Batten; Zhong-Min Su
Journal:  Chem Commun (Camb)       Date:  2008-03-10       Impact factor: 6.222

  3 in total
  2 in total

1.  Poly[[μ(2)-1,2-bis-(imidazol-1-ylmeth-yl)benzene](μ(2)-cyclo-hexane-1,4-dicarboxyl-ato)cobalt(II)].

Authors:  Min Chen; Min Xing
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-24

2.  Poly[[μ(2)-1,4-bis-(imidazol-1-ylmeth-yl)benzene]bis-(μ(4)-cyclo-hexane-1,4-dicarboxyl-ato)dicobalt(II)].

Authors:  Qun-Di Yu; Da-Jun Sun; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-05
  2 in total

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