Literature DB >> 21583282

1,1',3,3',5,5'-Hexamethyl-spiro-[furo[2,3-d]pyrimidine-6(5H),5'-pyrimidine]-2,2',4,4',6'(1H,3H,1'H,3'H,5'H)-penta-one.

Nader Noroozi Pesyan1, Saeed Rastgar, Yaser Hosseini.   

Abstract

In the title mol-ecule, C(15)H(18)N(4)O(6), the fused 2,3-dihydro-furan ring has an envelope conformation and the spiro pyrimidine ring has a half-chair conformation. In the crystal, short inter-molecular O⋯C contacts of 2.835 (4) and 2.868 (4) Å between the carbonyl groups indicate the existence of electrostatic inter-actions, which link the mol-ecules into corrugated sheets parallel to the ab plane.

Entities:  

Year:  2009        PMID: 21583282      PMCID: PMC2969643          DOI: 10.1107/S1600536809019618

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of furo[2,3-d]pyrimidine derivatives, see Cody et al. (1997 ▶). For a related crystal structure, see Malathy Sony et al. (2002 ▶).

Experimental

Crystal data

C15H18N4O6 M = 350.33 Orthorhombic, a = 8.0122 (9) Å b = 11.9181 (14) Å c = 16.4037 (19) Å V = 1566.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 120 K 0.21 × 0.14 × 0.12 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1998 ▶) T min = 0.980, T max = 0.989 15042 measured reflections 1964 independent reflections 1589 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.089 S = 1.01 1964 reflections 232 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809019618/cv2553sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809019618/cv2553Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H18N4O6Dx = 1.486 Mg m3
Mr = 350.33Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 985 reflections
a = 8.0122 (9) Åθ = 3–25°
b = 11.9181 (14) ŵ = 0.12 mm1
c = 16.4037 (19) ÅT = 120 K
V = 1566.4 (3) Å3Prism, white
Z = 40.21 × 0.14 × 0.12 mm
F(000) = 736
Bruker SMART 1000 CCD area-detector diffractometer1964 independent reflections
Radiation source: fine-focus sealed tube1589 reflections with I > 2σ(I)
graphiteRint = 0.041
φ and ω scansθmax = 27.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1998)h = −10→10
Tmin = 0.980, Tmax = 0.989k = −15→15
15042 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.01P)2 + 2P] where P = (Fo2 + 2Fc2)/3
1964 reflections(Δ/σ)max < 0.001
232 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5464 (3)0.52840 (19)0.75372 (15)0.0307 (6)
O20.8328 (3)0.8456 (2)0.69785 (15)0.0358 (6)
O30.6235 (3)0.7991 (2)0.94992 (14)0.0352 (6)
O40.4987 (3)0.59548 (19)0.90811 (15)0.0262 (5)
O5−0.0582 (3)0.6474 (2)0.83863 (15)0.0333 (6)
O60.0962 (3)0.3545 (2)1.00229 (15)0.0306 (6)
N10.6700 (4)0.6929 (2)0.71936 (16)0.0247 (6)
N20.6981 (4)0.8365 (2)0.81937 (16)0.0251 (6)
N40.0212 (3)0.5008 (2)0.92003 (17)0.0242 (6)
N50.3017 (3)0.4687 (2)0.95490 (17)0.0242 (6)
C10.5068 (4)0.6811 (3)0.84600 (19)0.0229 (7)
C20.5782 (4)0.6254 (3)0.7708 (2)0.0250 (7)
C30.7394 (4)0.7956 (3)0.7427 (2)0.0254 (7)
C40.6170 (4)0.7750 (3)0.8785 (2)0.0252 (7)
C50.3186 (4)0.7229 (3)0.8311 (2)0.0276 (8)
C60.2301 (4)0.6208 (3)0.8654 (2)0.0242 (7)
C70.3382 (4)0.5599 (3)0.9086 (2)0.0236 (7)
C80.1355 (4)0.4355 (3)0.9614 (2)0.0237 (7)
C90.0562 (4)0.5958 (3)0.8712 (2)0.0258 (8)
C100.7301 (5)0.6431 (3)0.6434 (2)0.0334 (8)
H10A0.63640.60840.61430.050*
H10B0.81420.58580.65570.050*
H10C0.77990.70160.60920.050*
C110.7816 (5)0.9384 (3)0.8465 (2)0.0321 (8)
H11A0.70270.98510.87710.048*
H11B0.82230.98020.79900.048*
H11C0.87600.91860.88170.048*
C120.2810 (5)0.7474 (3)0.7410 (2)0.0337 (9)
H12A0.16200.76450.73460.051*
H12B0.30950.68170.70790.051*
H12C0.34740.81190.72290.051*
C130.2770 (5)0.8270 (3)0.8822 (2)0.0358 (9)
H13A0.15720.84280.87840.054*
H13B0.34000.89150.86150.054*
H13C0.30720.81340.93920.054*
C14−0.1530 (4)0.4664 (3)0.9244 (2)0.0326 (8)
H14A−0.15960.38890.94420.049*
H14B−0.20340.47120.87010.049*
H14C−0.21330.51590.96190.049*
C150.4309 (4)0.3990 (3)0.9914 (2)0.0303 (8)
H15A0.52060.44691.01230.045*
H15B0.47600.34790.95010.045*
H15C0.38300.35531.03630.045*
U11U22U33U12U13U23
O10.0313 (14)0.0252 (12)0.0355 (13)−0.0023 (11)0.0011 (12)−0.0009 (11)
O20.0412 (15)0.0304 (13)0.0357 (14)−0.0072 (13)0.0071 (12)0.0047 (11)
O30.0416 (16)0.0377 (14)0.0262 (12)−0.0048 (13)0.0006 (12)−0.0017 (11)
O40.0207 (12)0.0275 (12)0.0304 (12)−0.0015 (10)−0.0002 (10)0.0055 (11)
O50.0240 (12)0.0359 (14)0.0399 (14)0.0027 (12)−0.0043 (12)0.0057 (12)
O60.0257 (13)0.0307 (13)0.0353 (13)−0.0014 (11)0.0014 (12)0.0063 (12)
N10.0264 (15)0.0257 (14)0.0221 (13)0.0007 (13)0.0016 (12)0.0010 (11)
N20.0262 (15)0.0225 (14)0.0267 (14)−0.0013 (12)0.0014 (13)0.0002 (12)
N40.0215 (14)0.0243 (14)0.0269 (14)0.0011 (12)0.0009 (12)−0.0002 (12)
N50.0228 (15)0.0228 (14)0.0268 (14)0.0009 (12)0.0004 (13)0.0025 (12)
C10.0207 (15)0.0247 (16)0.0234 (16)−0.0003 (14)0.0014 (14)0.0014 (14)
C20.0215 (16)0.0264 (17)0.0272 (17)0.0033 (15)−0.0023 (15)0.0004 (15)
C30.0258 (18)0.0242 (16)0.0262 (16)−0.0007 (15)−0.0021 (15)0.0017 (14)
C40.0227 (17)0.0257 (17)0.0274 (17)0.0034 (14)0.0007 (14)0.0008 (14)
C50.0196 (16)0.0285 (18)0.0346 (18)0.0030 (15)0.0035 (15)0.0044 (15)
C60.0218 (16)0.0252 (17)0.0255 (16)0.0005 (14)0.0028 (14)0.0021 (14)
C70.0224 (17)0.0210 (16)0.0275 (17)−0.0015 (15)0.0016 (15)−0.0016 (14)
C80.0225 (17)0.0243 (17)0.0244 (16)0.0015 (15)0.0015 (14)−0.0005 (15)
C90.0267 (18)0.0261 (18)0.0248 (17)0.0020 (15)0.0005 (15)−0.0016 (15)
C100.039 (2)0.0317 (19)0.0296 (18)0.0008 (18)0.0025 (17)−0.0012 (16)
C110.0331 (19)0.0269 (18)0.0363 (19)−0.0054 (16)0.0001 (17)−0.0015 (16)
C120.0284 (19)0.0342 (19)0.038 (2)0.0031 (17)−0.0037 (17)0.0085 (17)
C130.0293 (19)0.0268 (18)0.051 (2)0.0024 (16)0.0097 (19)0.0012 (18)
C140.0195 (17)0.038 (2)0.040 (2)−0.0035 (17)0.0002 (16)0.0034 (17)
C150.0242 (17)0.0302 (19)0.0364 (19)0.0043 (16)−0.0023 (17)0.0091 (16)
O1—C21.216 (4)C5—C131.534 (5)
O2—C31.206 (4)C5—C121.537 (5)
O3—C41.208 (4)C6—C71.334 (5)
O4—C71.354 (4)C6—C91.428 (5)
O4—C11.443 (4)C10—H10A0.9800
O5—C91.226 (4)C10—H10B0.9800
O6—C81.217 (4)C10—H10C0.9800
N1—C21.378 (4)C11—H11A0.9800
N1—C31.399 (4)C11—H11B0.9800
N1—C101.462 (4)C11—H11C0.9800
N2—C41.378 (4)C12—H12A0.9800
N2—C31.389 (4)C12—H12B0.9800
N2—C111.457 (4)C12—H12C0.9800
N4—C81.380 (4)C13—H13A0.9800
N4—C91.416 (4)C13—H13B0.9800
N4—C141.457 (4)C13—H13C0.9800
N5—C71.358 (4)C14—H14A0.9800
N5—C81.393 (4)C14—H14B0.9800
N5—C151.456 (4)C14—H14C0.9800
C1—C21.513 (4)C15—H15A0.9800
C1—C41.522 (5)C15—H15B0.9800
C1—C51.607 (5)C15—H15C0.9800
C5—C61.516 (5)
C8···O2i2.835 (4)C3···O5ii2.868 (4)
C7—O4—C1105.6 (3)O6—C8—N5121.0 (3)
C2—N1—C3123.8 (3)N4—C8—N5115.8 (3)
C2—N1—C10117.4 (3)O5—C9—N4120.0 (3)
C3—N1—C10117.2 (3)O5—C9—C6126.6 (3)
C4—N2—C3124.3 (3)N4—C9—C6113.4 (3)
C4—N2—C11116.4 (3)N1—C10—H10A109.5
C3—N2—C11117.3 (3)N1—C10—H10B109.5
C8—N4—C9126.8 (3)H10A—C10—H10B109.5
C8—N4—C14116.9 (3)N1—C10—H10C109.5
C9—N4—C14116.3 (3)H10A—C10—H10C109.5
C7—N5—C8118.5 (3)H10B—C10—H10C109.5
C7—N5—C15122.2 (3)N2—C11—H11A109.5
C8—N5—C15119.1 (3)N2—C11—H11B109.5
O4—C1—C2106.4 (3)H11A—C11—H11B109.5
O4—C1—C4107.4 (3)N2—C11—H11C109.5
C2—C1—C4112.9 (3)H11A—C11—H11C109.5
O4—C1—C5106.5 (3)H11B—C11—H11C109.5
C2—C1—C5111.5 (3)C5—C12—H12A109.5
C4—C1—C5111.7 (3)C5—C12—H12B109.5
O1—C2—N1121.7 (3)H12A—C12—H12B109.5
O1—C2—C1121.7 (3)C5—C12—H12C109.5
N1—C2—C1116.4 (3)H12A—C12—H12C109.5
O2—C3—N2121.8 (3)H12B—C12—H12C109.5
O2—C3—N1120.8 (3)C5—C13—H13A109.5
N2—C3—N1117.3 (3)C5—C13—H13B109.5
O3—C4—N2122.4 (3)H13A—C13—H13B109.5
O3—C4—C1122.6 (3)C5—C13—H13C109.5
N2—C4—C1114.7 (3)H13A—C13—H13C109.5
C6—C5—C13110.2 (3)H13B—C13—H13C109.5
C6—C5—C12114.7 (3)N4—C14—H14A109.5
C13—C5—C12109.2 (3)N4—C14—H14B109.5
C6—C5—C197.7 (3)H14A—C14—H14B109.5
C13—C5—C1111.8 (3)N4—C14—H14C109.5
C12—C5—C1112.9 (3)H14A—C14—H14C109.5
C7—C6—C9119.0 (3)H14B—C14—H14C109.5
C7—C6—C5109.3 (3)N5—C15—H15A109.5
C9—C6—C5130.4 (3)N5—C15—H15B109.5
C6—C7—O4116.3 (3)H15A—C15—H15B109.5
C6—C7—N5126.4 (3)N5—C15—H15C109.5
O4—C7—N5117.3 (3)H15A—C15—H15C109.5
O6—C8—N4123.1 (3)H15B—C15—H15C109.5
C7—O4—C1—C2−99.4 (3)C4—C1—C5—C13−22.4 (4)
C7—O4—C1—C4139.5 (3)O4—C1—C5—C12−141.8 (3)
C7—O4—C1—C519.7 (3)C2—C1—C5—C12−26.1 (4)
C3—N1—C2—O1−166.1 (3)C4—C1—C5—C12101.2 (3)
C10—N1—C2—O1−0.8 (5)C13—C5—C6—C7−101.6 (3)
C3—N1—C2—C119.0 (5)C12—C5—C6—C7134.8 (3)
C10—N1—C2—C1−175.7 (3)C1—C5—C6—C715.1 (4)
O4—C1—C2—O135.2 (4)C13—C5—C6—C964.9 (5)
C4—C1—C2—O1152.8 (3)C12—C5—C6—C9−58.7 (5)
C5—C1—C2—O1−80.6 (4)C1—C5—C6—C9−178.4 (4)
O4—C1—C2—N1−149.9 (3)C9—C6—C7—O4−172.6 (3)
C4—C1—C2—N1−32.3 (4)C5—C6—C7—O4−4.3 (4)
C5—C1—C2—N194.4 (3)C9—C6—C7—N54.8 (5)
C4—N2—C3—O2−168.0 (3)C5—C6—C7—N5173.1 (3)
C11—N2—C3—O2−4.5 (5)C1—O4—C7—C6−10.5 (4)
C4—N2—C3—N111.2 (5)C1—O4—C7—N5171.8 (3)
C11—N2—C3—N1174.8 (3)C8—N5—C7—C6−2.2 (5)
C2—N1—C3—O2172.2 (3)C15—N5—C7—C6171.9 (3)
C10—N1—C3—O26.9 (5)C8—N5—C7—O4175.2 (3)
C2—N1—C3—N2−7.0 (5)C15—N5—C7—O4−10.7 (5)
C10—N1—C3—N2−172.3 (3)C9—N4—C8—O6−179.9 (3)
C3—N2—C4—O3158.8 (3)C14—N4—C8—O6−2.3 (5)
C11—N2—C4—O3−4.9 (5)C9—N4—C8—N51.2 (5)
C3—N2—C4—C1−26.5 (5)C14—N4—C8—N5178.7 (3)
C11—N2—C4—C1169.9 (3)C7—N5—C8—O6−179.8 (3)
O4—C1—C4—O3−32.7 (4)C15—N5—C8—O65.9 (5)
C2—C1—C4—O3−149.7 (3)C7—N5—C8—N4−0.9 (5)
C5—C1—C4—O383.7 (4)C15—N5—C8—N4−175.1 (3)
O4—C1—C4—N2152.5 (3)C8—N4—C9—O5−179.0 (3)
C2—C1—C4—N235.5 (4)C14—N4—C9—O53.5 (5)
C5—C1—C4—N2−91.1 (3)C8—N4—C9—C61.3 (5)
O4—C1—C5—C6−20.8 (3)C14—N4—C9—C6−176.3 (3)
C2—C1—C5—C694.9 (3)C7—C6—C9—O5176.2 (3)
C4—C1—C5—C6−137.8 (3)C5—C6—C9—O510.8 (6)
O4—C1—C5—C1394.6 (3)C7—C6—C9—N4−4.1 (5)
C2—C1—C5—C13−149.7 (3)C5—C6—C9—N4−169.5 (3)
Table 1

Selected interatomic distances (Å)

C8⋯O2i2.835 (4)
C3⋯O5ii2.868 (4)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  9,9-Dimethoxy-7,11-diphenyl-2,4-diazaspiro[5.5]undecane-1,3,5-trione monohydrate.

Authors:  S M Malathy Sony; M Kuppayee; M N Ponnuswamy; D Bhasker Reddy; V Padmavathi; Hoong Kun Fun
Journal:  Acta Crystallogr C       Date:  2002-10-31       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Comparison of ternary complexes of Pneumocystis carinii and wild-type human dihydrofolate reductase with coenzyme NADPH and a novel classical antitumor furo[2,3-d]pyrimidine antifolate.

Authors:  V Cody; N Galitsky; J R Luft; W Pangborn; A Gangjee; R Devraj; S F Queener; R L Blakley
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-11-01
  3 in total
  1 in total

1.  Methyl 6-(4-chloro-phen-yl)-2,4-dimethyl-1,3-dioxo-1,2,3,4,6,6a,7,12b-octa-hydro-chromeno[4',3':4,5]pyrano[2,3-d]pyrimidine-6a-carboxyl-ate.

Authors:  J Kanchanadevi; G Anbalagan; G Sivakumar; M Bakthadoss; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09
  1 in total

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