| Literature DB >> 21583282 |
Nader Noroozi Pesyan1, Saeed Rastgar, Yaser Hosseini.
Abstract
In the title mol-ecule, C(15)H(18)N(4)O(6), the fused 2,3-dihydro-furan ring has an envelope conformation and the spiro pyrimidine ring has a half-chair conformation. In the crystal, short inter-molecular O⋯C contacts of 2.835 (4) and 2.868 (4) Å between the carbonyl groups indicate the existence of electrostatic inter-actions, which link the mol-ecules into corrugated sheets parallel to the ab plane.Entities:
Year: 2009 PMID: 21583282 PMCID: PMC2969643 DOI: 10.1107/S1600536809019618
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H18N4O6 | |
| Mo | |
| Orthorhombic, | Cell parameters from 985 reflections |
| θ = 3–25° | |
| µ = 0.12 mm−1 | |
| Prism, white | |
| 0.21 × 0.14 × 0.12 mm | |
| Bruker SMART 1000 CCD area-detector diffractometer | 1964 independent reflections |
| Radiation source: fine-focus sealed tube | 1589 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.0°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 15042 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1964 reflections | (Δ/σ)max < 0.001 |
| 232 parameters | Δρmax = 0.20 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.5464 (3) | 0.52840 (19) | 0.75372 (15) | 0.0307 (6) | |
| O2 | 0.8328 (3) | 0.8456 (2) | 0.69785 (15) | 0.0358 (6) | |
| O3 | 0.6235 (3) | 0.7991 (2) | 0.94992 (14) | 0.0352 (6) | |
| O4 | 0.4987 (3) | 0.59548 (19) | 0.90811 (15) | 0.0262 (5) | |
| O5 | −0.0582 (3) | 0.6474 (2) | 0.83863 (15) | 0.0333 (6) | |
| O6 | 0.0962 (3) | 0.3545 (2) | 1.00229 (15) | 0.0306 (6) | |
| N1 | 0.6700 (4) | 0.6929 (2) | 0.71936 (16) | 0.0247 (6) | |
| N2 | 0.6981 (4) | 0.8365 (2) | 0.81937 (16) | 0.0251 (6) | |
| N4 | 0.0212 (3) | 0.5008 (2) | 0.92003 (17) | 0.0242 (6) | |
| N5 | 0.3017 (3) | 0.4687 (2) | 0.95490 (17) | 0.0242 (6) | |
| C1 | 0.5068 (4) | 0.6811 (3) | 0.84600 (19) | 0.0229 (7) | |
| C2 | 0.5782 (4) | 0.6254 (3) | 0.7708 (2) | 0.0250 (7) | |
| C3 | 0.7394 (4) | 0.7956 (3) | 0.7427 (2) | 0.0254 (7) | |
| C4 | 0.6170 (4) | 0.7750 (3) | 0.8785 (2) | 0.0252 (7) | |
| C5 | 0.3186 (4) | 0.7229 (3) | 0.8311 (2) | 0.0276 (8) | |
| C6 | 0.2301 (4) | 0.6208 (3) | 0.8654 (2) | 0.0242 (7) | |
| C7 | 0.3382 (4) | 0.5599 (3) | 0.9086 (2) | 0.0236 (7) | |
| C8 | 0.1355 (4) | 0.4355 (3) | 0.9614 (2) | 0.0237 (7) | |
| C9 | 0.0562 (4) | 0.5958 (3) | 0.8712 (2) | 0.0258 (8) | |
| C10 | 0.7301 (5) | 0.6431 (3) | 0.6434 (2) | 0.0334 (8) | |
| H10A | 0.6364 | 0.6084 | 0.6143 | 0.050* | |
| H10B | 0.8142 | 0.5858 | 0.6557 | 0.050* | |
| H10C | 0.7799 | 0.7016 | 0.6092 | 0.050* | |
| C11 | 0.7816 (5) | 0.9384 (3) | 0.8465 (2) | 0.0321 (8) | |
| H11A | 0.7027 | 0.9851 | 0.8771 | 0.048* | |
| H11B | 0.8223 | 0.9802 | 0.7990 | 0.048* | |
| H11C | 0.8760 | 0.9186 | 0.8817 | 0.048* | |
| C12 | 0.2810 (5) | 0.7474 (3) | 0.7410 (2) | 0.0337 (9) | |
| H12A | 0.1620 | 0.7645 | 0.7346 | 0.051* | |
| H12B | 0.3095 | 0.6817 | 0.7079 | 0.051* | |
| H12C | 0.3474 | 0.8119 | 0.7229 | 0.051* | |
| C13 | 0.2770 (5) | 0.8270 (3) | 0.8822 (2) | 0.0358 (9) | |
| H13A | 0.1572 | 0.8428 | 0.8784 | 0.054* | |
| H13B | 0.3400 | 0.8915 | 0.8615 | 0.054* | |
| H13C | 0.3072 | 0.8134 | 0.9392 | 0.054* | |
| C14 | −0.1530 (4) | 0.4664 (3) | 0.9244 (2) | 0.0326 (8) | |
| H14A | −0.1596 | 0.3889 | 0.9442 | 0.049* | |
| H14B | −0.2034 | 0.4712 | 0.8701 | 0.049* | |
| H14C | −0.2133 | 0.5159 | 0.9619 | 0.049* | |
| C15 | 0.4309 (4) | 0.3990 (3) | 0.9914 (2) | 0.0303 (8) | |
| H15A | 0.5206 | 0.4469 | 1.0123 | 0.045* | |
| H15B | 0.4760 | 0.3479 | 0.9501 | 0.045* | |
| H15C | 0.3830 | 0.3553 | 1.0363 | 0.045* |
| O1 | 0.0313 (14) | 0.0252 (12) | 0.0355 (13) | −0.0023 (11) | 0.0011 (12) | −0.0009 (11) |
| O2 | 0.0412 (15) | 0.0304 (13) | 0.0357 (14) | −0.0072 (13) | 0.0071 (12) | 0.0047 (11) |
| O3 | 0.0416 (16) | 0.0377 (14) | 0.0262 (12) | −0.0048 (13) | 0.0006 (12) | −0.0017 (11) |
| O4 | 0.0207 (12) | 0.0275 (12) | 0.0304 (12) | −0.0015 (10) | −0.0002 (10) | 0.0055 (11) |
| O5 | 0.0240 (12) | 0.0359 (14) | 0.0399 (14) | 0.0027 (12) | −0.0043 (12) | 0.0057 (12) |
| O6 | 0.0257 (13) | 0.0307 (13) | 0.0353 (13) | −0.0014 (11) | 0.0014 (12) | 0.0063 (12) |
| N1 | 0.0264 (15) | 0.0257 (14) | 0.0221 (13) | 0.0007 (13) | 0.0016 (12) | 0.0010 (11) |
| N2 | 0.0262 (15) | 0.0225 (14) | 0.0267 (14) | −0.0013 (12) | 0.0014 (13) | 0.0002 (12) |
| N4 | 0.0215 (14) | 0.0243 (14) | 0.0269 (14) | 0.0011 (12) | 0.0009 (12) | −0.0002 (12) |
| N5 | 0.0228 (15) | 0.0228 (14) | 0.0268 (14) | 0.0009 (12) | 0.0004 (13) | 0.0025 (12) |
| C1 | 0.0207 (15) | 0.0247 (16) | 0.0234 (16) | −0.0003 (14) | 0.0014 (14) | 0.0014 (14) |
| C2 | 0.0215 (16) | 0.0264 (17) | 0.0272 (17) | 0.0033 (15) | −0.0023 (15) | 0.0004 (15) |
| C3 | 0.0258 (18) | 0.0242 (16) | 0.0262 (16) | −0.0007 (15) | −0.0021 (15) | 0.0017 (14) |
| C4 | 0.0227 (17) | 0.0257 (17) | 0.0274 (17) | 0.0034 (14) | 0.0007 (14) | 0.0008 (14) |
| C5 | 0.0196 (16) | 0.0285 (18) | 0.0346 (18) | 0.0030 (15) | 0.0035 (15) | 0.0044 (15) |
| C6 | 0.0218 (16) | 0.0252 (17) | 0.0255 (16) | 0.0005 (14) | 0.0028 (14) | 0.0021 (14) |
| C7 | 0.0224 (17) | 0.0210 (16) | 0.0275 (17) | −0.0015 (15) | 0.0016 (15) | −0.0016 (14) |
| C8 | 0.0225 (17) | 0.0243 (17) | 0.0244 (16) | 0.0015 (15) | 0.0015 (14) | −0.0005 (15) |
| C9 | 0.0267 (18) | 0.0261 (18) | 0.0248 (17) | 0.0020 (15) | 0.0005 (15) | −0.0016 (15) |
| C10 | 0.039 (2) | 0.0317 (19) | 0.0296 (18) | 0.0008 (18) | 0.0025 (17) | −0.0012 (16) |
| C11 | 0.0331 (19) | 0.0269 (18) | 0.0363 (19) | −0.0054 (16) | 0.0001 (17) | −0.0015 (16) |
| C12 | 0.0284 (19) | 0.0342 (19) | 0.038 (2) | 0.0031 (17) | −0.0037 (17) | 0.0085 (17) |
| C13 | 0.0293 (19) | 0.0268 (18) | 0.051 (2) | 0.0024 (16) | 0.0097 (19) | 0.0012 (18) |
| C14 | 0.0195 (17) | 0.038 (2) | 0.040 (2) | −0.0035 (17) | 0.0002 (16) | 0.0034 (17) |
| C15 | 0.0242 (17) | 0.0302 (19) | 0.0364 (19) | 0.0043 (16) | −0.0023 (17) | 0.0091 (16) |
| O1—C2 | 1.216 (4) | C5—C13 | 1.534 (5) |
| O2—C3 | 1.206 (4) | C5—C12 | 1.537 (5) |
| O3—C4 | 1.208 (4) | C6—C7 | 1.334 (5) |
| O4—C7 | 1.354 (4) | C6—C9 | 1.428 (5) |
| O4—C1 | 1.443 (4) | C10—H10A | 0.9800 |
| O5—C9 | 1.226 (4) | C10—H10B | 0.9800 |
| O6—C8 | 1.217 (4) | C10—H10C | 0.9800 |
| N1—C2 | 1.378 (4) | C11—H11A | 0.9800 |
| N1—C3 | 1.399 (4) | C11—H11B | 0.9800 |
| N1—C10 | 1.462 (4) | C11—H11C | 0.9800 |
| N2—C4 | 1.378 (4) | C12—H12A | 0.9800 |
| N2—C3 | 1.389 (4) | C12—H12B | 0.9800 |
| N2—C11 | 1.457 (4) | C12—H12C | 0.9800 |
| N4—C8 | 1.380 (4) | C13—H13A | 0.9800 |
| N4—C9 | 1.416 (4) | C13—H13B | 0.9800 |
| N4—C14 | 1.457 (4) | C13—H13C | 0.9800 |
| N5—C7 | 1.358 (4) | C14—H14A | 0.9800 |
| N5—C8 | 1.393 (4) | C14—H14B | 0.9800 |
| N5—C15 | 1.456 (4) | C14—H14C | 0.9800 |
| C1—C2 | 1.513 (4) | C15—H15A | 0.9800 |
| C1—C4 | 1.522 (5) | C15—H15B | 0.9800 |
| C1—C5 | 1.607 (5) | C15—H15C | 0.9800 |
| C5—C6 | 1.516 (5) | ||
| C8···O2i | 2.835 (4) | C3···O5ii | 2.868 (4) |
| C7—O4—C1 | 105.6 (3) | O6—C8—N5 | 121.0 (3) |
| C2—N1—C3 | 123.8 (3) | N4—C8—N5 | 115.8 (3) |
| C2—N1—C10 | 117.4 (3) | O5—C9—N4 | 120.0 (3) |
| C3—N1—C10 | 117.2 (3) | O5—C9—C6 | 126.6 (3) |
| C4—N2—C3 | 124.3 (3) | N4—C9—C6 | 113.4 (3) |
| C4—N2—C11 | 116.4 (3) | N1—C10—H10A | 109.5 |
| C3—N2—C11 | 117.3 (3) | N1—C10—H10B | 109.5 |
| C8—N4—C9 | 126.8 (3) | H10A—C10—H10B | 109.5 |
| C8—N4—C14 | 116.9 (3) | N1—C10—H10C | 109.5 |
| C9—N4—C14 | 116.3 (3) | H10A—C10—H10C | 109.5 |
| C7—N5—C8 | 118.5 (3) | H10B—C10—H10C | 109.5 |
| C7—N5—C15 | 122.2 (3) | N2—C11—H11A | 109.5 |
| C8—N5—C15 | 119.1 (3) | N2—C11—H11B | 109.5 |
| O4—C1—C2 | 106.4 (3) | H11A—C11—H11B | 109.5 |
| O4—C1—C4 | 107.4 (3) | N2—C11—H11C | 109.5 |
| C2—C1—C4 | 112.9 (3) | H11A—C11—H11C | 109.5 |
| O4—C1—C5 | 106.5 (3) | H11B—C11—H11C | 109.5 |
| C2—C1—C5 | 111.5 (3) | C5—C12—H12A | 109.5 |
| C4—C1—C5 | 111.7 (3) | C5—C12—H12B | 109.5 |
| O1—C2—N1 | 121.7 (3) | H12A—C12—H12B | 109.5 |
| O1—C2—C1 | 121.7 (3) | C5—C12—H12C | 109.5 |
| N1—C2—C1 | 116.4 (3) | H12A—C12—H12C | 109.5 |
| O2—C3—N2 | 121.8 (3) | H12B—C12—H12C | 109.5 |
| O2—C3—N1 | 120.8 (3) | C5—C13—H13A | 109.5 |
| N2—C3—N1 | 117.3 (3) | C5—C13—H13B | 109.5 |
| O3—C4—N2 | 122.4 (3) | H13A—C13—H13B | 109.5 |
| O3—C4—C1 | 122.6 (3) | C5—C13—H13C | 109.5 |
| N2—C4—C1 | 114.7 (3) | H13A—C13—H13C | 109.5 |
| C6—C5—C13 | 110.2 (3) | H13B—C13—H13C | 109.5 |
| C6—C5—C12 | 114.7 (3) | N4—C14—H14A | 109.5 |
| C13—C5—C12 | 109.2 (3) | N4—C14—H14B | 109.5 |
| C6—C5—C1 | 97.7 (3) | H14A—C14—H14B | 109.5 |
| C13—C5—C1 | 111.8 (3) | N4—C14—H14C | 109.5 |
| C12—C5—C1 | 112.9 (3) | H14A—C14—H14C | 109.5 |
| C7—C6—C9 | 119.0 (3) | H14B—C14—H14C | 109.5 |
| C7—C6—C5 | 109.3 (3) | N5—C15—H15A | 109.5 |
| C9—C6—C5 | 130.4 (3) | N5—C15—H15B | 109.5 |
| C6—C7—O4 | 116.3 (3) | H15A—C15—H15B | 109.5 |
| C6—C7—N5 | 126.4 (3) | N5—C15—H15C | 109.5 |
| O4—C7—N5 | 117.3 (3) | H15A—C15—H15C | 109.5 |
| O6—C8—N4 | 123.1 (3) | H15B—C15—H15C | 109.5 |
| C7—O4—C1—C2 | −99.4 (3) | C4—C1—C5—C13 | −22.4 (4) |
| C7—O4—C1—C4 | 139.5 (3) | O4—C1—C5—C12 | −141.8 (3) |
| C7—O4—C1—C5 | 19.7 (3) | C2—C1—C5—C12 | −26.1 (4) |
| C3—N1—C2—O1 | −166.1 (3) | C4—C1—C5—C12 | 101.2 (3) |
| C10—N1—C2—O1 | −0.8 (5) | C13—C5—C6—C7 | −101.6 (3) |
| C3—N1—C2—C1 | 19.0 (5) | C12—C5—C6—C7 | 134.8 (3) |
| C10—N1—C2—C1 | −175.7 (3) | C1—C5—C6—C7 | 15.1 (4) |
| O4—C1—C2—O1 | 35.2 (4) | C13—C5—C6—C9 | 64.9 (5) |
| C4—C1—C2—O1 | 152.8 (3) | C12—C5—C6—C9 | −58.7 (5) |
| C5—C1—C2—O1 | −80.6 (4) | C1—C5—C6—C9 | −178.4 (4) |
| O4—C1—C2—N1 | −149.9 (3) | C9—C6—C7—O4 | −172.6 (3) |
| C4—C1—C2—N1 | −32.3 (4) | C5—C6—C7—O4 | −4.3 (4) |
| C5—C1—C2—N1 | 94.4 (3) | C9—C6—C7—N5 | 4.8 (5) |
| C4—N2—C3—O2 | −168.0 (3) | C5—C6—C7—N5 | 173.1 (3) |
| C11—N2—C3—O2 | −4.5 (5) | C1—O4—C7—C6 | −10.5 (4) |
| C4—N2—C3—N1 | 11.2 (5) | C1—O4—C7—N5 | 171.8 (3) |
| C11—N2—C3—N1 | 174.8 (3) | C8—N5—C7—C6 | −2.2 (5) |
| C2—N1—C3—O2 | 172.2 (3) | C15—N5—C7—C6 | 171.9 (3) |
| C10—N1—C3—O2 | 6.9 (5) | C8—N5—C7—O4 | 175.2 (3) |
| C2—N1—C3—N2 | −7.0 (5) | C15—N5—C7—O4 | −10.7 (5) |
| C10—N1—C3—N2 | −172.3 (3) | C9—N4—C8—O6 | −179.9 (3) |
| C3—N2—C4—O3 | 158.8 (3) | C14—N4—C8—O6 | −2.3 (5) |
| C11—N2—C4—O3 | −4.9 (5) | C9—N4—C8—N5 | 1.2 (5) |
| C3—N2—C4—C1 | −26.5 (5) | C14—N4—C8—N5 | 178.7 (3) |
| C11—N2—C4—C1 | 169.9 (3) | C7—N5—C8—O6 | −179.8 (3) |
| O4—C1—C4—O3 | −32.7 (4) | C15—N5—C8—O6 | 5.9 (5) |
| C2—C1—C4—O3 | −149.7 (3) | C7—N5—C8—N4 | −0.9 (5) |
| C5—C1—C4—O3 | 83.7 (4) | C15—N5—C8—N4 | −175.1 (3) |
| O4—C1—C4—N2 | 152.5 (3) | C8—N4—C9—O5 | −179.0 (3) |
| C2—C1—C4—N2 | 35.5 (4) | C14—N4—C9—O5 | 3.5 (5) |
| C5—C1—C4—N2 | −91.1 (3) | C8—N4—C9—C6 | 1.3 (5) |
| O4—C1—C5—C6 | −20.8 (3) | C14—N4—C9—C6 | −176.3 (3) |
| C2—C1—C5—C6 | 94.9 (3) | C7—C6—C9—O5 | 176.2 (3) |
| C4—C1—C5—C6 | −137.8 (3) | C5—C6—C9—O5 | 10.8 (6) |
| O4—C1—C5—C13 | 94.6 (3) | C7—C6—C9—N4 | −4.1 (5) |
| C2—C1—C5—C13 | −149.7 (3) | C5—C6—C9—N4 | −169.5 (3) |
Selected interatomic distances (Å)
| C8⋯O2i | 2.835 (4) |
| C3⋯O5ii | 2.868 (4) |
Symmetry codes: (i) ; (ii) .