Literature DB >> 21583261

Diethyl 2-[(5-meth-oxy-2-methyl-1-phenyl-sulfonyl-1H-indol-3-yl)methyl-ene]malonate.

T Kavitha, M Thenmozhi, V Dhayalan, A K Mohanakrishnan, M N Ponnuswamy.   

Abstract

In the title compound, C(24)H(25)NO(7)S, the sulfonyl-bound phenyl ring is approximately perpendicular to the indole ring system [dihedral angle = 87.72 (5)°]. The methyl group of one of the ester units is disordered over two positions with occupancies of 0.527 (13) and 0.473 (13). An intra-molecular C-H⋯O hydrogen bond is observed. In the crystal structure, mol-ecules are linked into a ribbon structure running along the c axis by inter-molecular C-H⋯O hydrogen bonds and C-H⋯π inter-actions involving the pyrrole ring.

Entities:  

Year:  2009        PMID: 21583261      PMCID: PMC2969626          DOI: 10.1107/S1600536809019369

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background on indoles, see: El-Sayed et al. (1986 ▶); Farhanullah et al. (2004 ▶); Okabe & Adachi (1998 ▶); Schollmeyer et al. (1995 ▶). For the Thorpe–Ingold effect, see: Bassindale (1984 ▶). For hybridization, see: Beddoes et al. (1986 ▶). For a related structure, see: Chakkaravarthi et al. (2008 ▶).

Experimental

Crystal data

C24H25NO7S M = 471.51 Triclinic, a = 8.7597 (2) Å b = 10.9029 (2) Å c = 12.5186 (3) Å α = 88.402 (1)° β = 79.723 (1)° γ = 83.635 (2)° V = 1169.13 (4) Å3 Z = 2 Mo Kα radiation μ = 0.18 mm−1 T = 293 K 0.22 × 0.18 × 0.15 mm

Data collection

Bruker Kappa APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.964, T max = 0.971 27454 measured reflections 6218 independent reflections 4628 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.176 S = 1.07 6218 reflections 309 parameters 16 restraints H-atom parameters constrained Δρmax = 0.66 e Å−3 Δρmin = −0.45 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809019369/ci2774sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809019369/ci2774Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H25NO7SZ = 2
Mr = 471.51F(000) = 496
Triclinic, P1Dx = 1.339 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.7597 (2) ÅCell parameters from 6218 reflections
b = 10.9029 (2) Åθ = 1.6–29.1°
c = 12.5186 (3) ŵ = 0.18 mm1
α = 88.402 (1)°T = 293 K
β = 79.723 (1)°Block, yellow
γ = 83.635 (2)°0.22 × 0.18 × 0.15 mm
V = 1169.13 (4) Å3
Bruker Kappa-APEXII area-detector diffractometer6218 independent reflections
Radiation source: fine-focus sealed tube4628 reflections with I > 2σ(I)
graphiteRint = 0.023
ω and φ scansθmax = 29.1°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −11→11
Tmin = 0.964, Tmax = 0.971k = −14→14
27454 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.176H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.09P)2 + 0.3748P] where P = (Fo2 + 2Fc2)/3
6218 reflections(Δ/σ)max = 0.001
309 parametersΔρmax = 0.66 e Å3
16 restraintsΔρmin = −0.45 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C20.1929 (2)0.26604 (18)0.44185 (16)0.0459 (4)
C30.2837 (2)0.35252 (17)0.39343 (15)0.0423 (4)
C40.2631 (2)0.45572 (17)0.46608 (14)0.0390 (4)
C50.1556 (2)0.43026 (17)0.55745 (15)0.0399 (4)
C60.1105 (2)0.51428 (18)0.64167 (15)0.0462 (4)
H60.03720.49790.70230.055*
C70.1787 (2)0.62274 (19)0.63165 (16)0.0482 (4)
H70.15230.67970.68760.058*
C80.2861 (2)0.64990 (18)0.54028 (16)0.0442 (4)
C90.3283 (2)0.56763 (18)0.45571 (15)0.0427 (4)
H90.39790.58610.39370.051*
C100.1592 (2)0.15262 (18)0.70459 (16)0.0461 (4)
C110.2091 (3)0.0301 (2)0.68271 (18)0.0550 (5)
H110.1655−0.01220.63420.066*
C120.3239 (3)−0.0290 (2)0.7332 (2)0.0682 (6)
H120.3584−0.11170.71900.082*
C130.3875 (3)0.0341 (3)0.8045 (2)0.0745 (7)
H130.4654−0.00610.83840.089*
C140.3377 (4)0.1551 (3)0.8262 (2)0.0756 (7)
H140.38180.19680.87490.091*
C150.2218 (3)0.2167 (2)0.77638 (19)0.0611 (6)
H150.18730.29930.79110.073*
C160.1853 (4)0.1390 (2)0.4038 (2)0.0672 (6)
H16A0.08830.13540.37900.101*
H16B0.19240.08130.46250.101*
H16C0.27040.11830.34520.101*
C170.3945 (2)0.34685 (18)0.29260 (16)0.0465 (4)
H170.48660.38080.29520.056*
C180.3860 (2)0.30077 (18)0.19641 (16)0.0470 (4)
C190.2432 (2)0.2538 (2)0.17047 (16)0.0506 (5)
C200.1390 (3)0.0829 (3)0.1115 (3)0.0788 (8)
H20A0.11120.11960.04520.095*
H20B0.04940.09750.16930.095*
C210.1827 (5)−0.0488 (3)0.0973 (3)0.1081 (12)
H21A0.0969−0.08650.07890.162*
H21B0.2087−0.08460.16360.162*
H21C0.2714−0.06250.04000.162*
C220.5148 (3)0.3041 (2)0.10308 (19)0.0587 (5)
C230.7754 (4)0.3516 (4)0.0435 (3)0.1053 (13)
H23A0.79170.2818−0.00510.126*
H23B0.86860.35370.07480.126*
C240.7462 (13)0.4658 (8)−0.0169 (9)0.136 (4)0.527 (13)
H24A0.83450.4753−0.07300.204*0.527 (13)
H24B0.72990.53460.03150.204*0.527 (13)
H24C0.65510.4626−0.04910.204*0.527 (13)
C24'0.8132 (13)0.4810 (6)0.0454 (10)0.125 (4)0.473 (13)
H24D0.90140.4925−0.01020.187*0.473 (13)
H24E0.83750.49770.11500.187*0.473 (13)
H24F0.72510.53640.03260.187*0.473 (13)
C250.4367 (3)0.8015 (2)0.4473 (2)0.0655 (6)
H25A0.46780.88090.45930.098*
H25B0.37890.80730.38870.098*
H25C0.52770.74330.42910.098*
N10.10926 (19)0.31258 (15)0.54194 (13)0.0450 (4)
O1−0.07993 (18)0.31630 (15)0.71397 (14)0.0640 (4)
O2−0.05720 (19)0.14123 (16)0.59054 (15)0.0668 (5)
O30.11914 (19)0.31388 (18)0.17716 (15)0.0703 (5)
O40.27014 (18)0.13750 (15)0.13834 (14)0.0620 (4)
O50.5020 (3)0.2806 (3)0.01285 (16)0.1019 (8)
O60.6431 (2)0.3383 (2)0.12855 (16)0.0883 (7)
O70.34224 (19)0.76187 (14)0.54229 (13)0.0588 (4)
S10.01286 (6)0.23002 (5)0.64069 (4)0.04951 (16)
U11U22U33U12U13U23
C20.0544 (10)0.0432 (10)0.0434 (9)−0.0068 (8)−0.0163 (8)0.0002 (8)
C30.0455 (9)0.0434 (9)0.0398 (9)−0.0034 (7)−0.0130 (7)−0.0031 (7)
C40.0372 (8)0.0437 (9)0.0376 (8)−0.0026 (7)−0.0115 (7)−0.0017 (7)
C50.0388 (8)0.0407 (9)0.0412 (9)−0.0036 (7)−0.0111 (7)0.0038 (7)
C60.0467 (10)0.0499 (10)0.0397 (9)−0.0027 (8)−0.0031 (7)0.0012 (8)
C70.0522 (10)0.0478 (10)0.0436 (10)−0.0023 (8)−0.0064 (8)−0.0076 (8)
C80.0439 (9)0.0434 (10)0.0473 (10)−0.0062 (7)−0.0128 (8)−0.0022 (8)
C90.0397 (8)0.0478 (10)0.0414 (9)−0.0075 (7)−0.0079 (7)−0.0001 (7)
C100.0471 (9)0.0492 (10)0.0428 (9)−0.0094 (8)−0.0088 (8)0.0095 (8)
C110.0635 (12)0.0507 (11)0.0528 (11)−0.0101 (9)−0.0147 (10)0.0068 (9)
C120.0740 (15)0.0624 (14)0.0659 (15)0.0076 (12)−0.0171 (12)0.0075 (12)
C130.0711 (15)0.0868 (14)0.0675 (15)0.0054 (13)−0.0279 (13)0.0119 (13)
C140.0849 (18)0.0880 (15)0.0622 (14)−0.0091 (14)−0.0347 (14)−0.0049 (13)
C150.0748 (15)0.0584 (13)0.0537 (12)−0.0061 (11)−0.0216 (11)−0.0009 (10)
C160.1018 (19)0.0461 (11)0.0566 (13)−0.0175 (12)−0.0155 (13)−0.0015 (10)
C170.0470 (10)0.0458 (10)0.0471 (10)−0.0044 (8)−0.0089 (8)−0.0051 (8)
C180.0461 (10)0.0489 (10)0.0460 (10)−0.0036 (8)−0.0078 (8)−0.0071 (8)
C190.0474 (10)0.0630 (12)0.0409 (9)−0.0042 (9)−0.0062 (8)−0.0079 (9)
C200.0690 (16)0.093 (2)0.0817 (18)−0.0299 (14)−0.0183 (13)−0.0193 (15)
C210.112 (3)0.092 (2)0.126 (3)−0.050 (2)−0.008 (2)−0.026 (2)
C220.0522 (11)0.0685 (14)0.0543 (12)−0.0114 (10)−0.0009 (9)−0.0172 (10)
C230.0772 (19)0.128 (3)0.105 (2)−0.044 (2)0.0246 (15)−0.035 (2)
C240.135 (4)0.136 (4)0.136 (4)−0.0144 (11)−0.0234 (12)0.0001 (10)
C24'0.125 (4)0.125 (4)0.125 (4)−0.0152 (11)−0.0213 (12)0.0003 (10)
C250.0642 (14)0.0622 (14)0.0728 (15)−0.0255 (11)−0.0089 (11)0.0043 (11)
N10.0512 (9)0.0430 (8)0.0429 (8)−0.0096 (7)−0.0122 (7)0.0052 (6)
O10.0498 (8)0.0646 (10)0.0700 (10)−0.0029 (7)0.0056 (7)0.0129 (8)
O20.0590 (9)0.0645 (10)0.0867 (12)−0.0265 (8)−0.0296 (8)0.0149 (9)
O30.0480 (8)0.0871 (12)0.0744 (11)0.0051 (8)−0.0117 (8)−0.0208 (9)
O40.0545 (8)0.0616 (9)0.0736 (10)−0.0097 (7)−0.0169 (7)−0.0169 (8)
O50.0799 (13)0.169 (2)0.0583 (11)−0.0429 (14)0.0093 (9)−0.0447 (13)
O60.0620 (11)0.1307 (18)0.0742 (12)−0.0402 (11)0.0049 (8)−0.0285 (12)
O70.0675 (9)0.0513 (8)0.0599 (9)−0.0203 (7)−0.0080 (7)−0.0071 (7)
S10.0422 (3)0.0513 (3)0.0567 (3)−0.0116 (2)−0.0114 (2)0.0123 (2)
C2—C31.360 (3)C17—H170.93
C2—N11.411 (3)C18—C221.475 (3)
C2—C161.490 (3)C18—C191.493 (3)
C3—C41.442 (2)C19—O31.196 (3)
C3—C171.447 (3)C19—O41.324 (3)
C4—C51.388 (3)C20—O41.445 (3)
C4—C91.396 (3)C20—C211.452 (5)
C5—C61.390 (3)C20—H20A0.97
C5—N11.416 (2)C20—H20B0.97
C6—C71.376 (3)C21—H21A0.96
C6—H60.93C21—H21B0.96
C7—C81.393 (3)C21—H21C0.96
C7—H70.93C22—O51.193 (3)
C8—O71.368 (2)C22—O61.316 (3)
C8—C91.379 (3)C23—O61.445 (3)
C9—H90.93C23—C241.461 (5)
C10—C151.376 (3)C23—C24'1.486 (5)
C10—C111.378 (3)C23—H23A0.97
C10—S11.756 (2)C23—H23B0.97
C11—C121.373 (3)C24—H24A0.96
C11—H110.93C24—H24B0.96
C12—C131.370 (4)C24—H24C0.96
C12—H120.93C24'—H24D0.96
C13—C141.362 (4)C24'—H24E0.96
C13—H130.93C24'—H24F0.96
C14—C151.386 (3)C25—O71.409 (3)
C14—H140.93C25—H25A0.96
C15—H150.93C25—H25B0.96
C16—H16A0.96C25—H25C0.96
C16—H16B0.96N1—S11.6690 (16)
C16—H16C0.96O1—S11.4141 (17)
C17—C181.335 (3)O2—S11.4181 (17)
C3—C2—N1108.67 (16)O4—C19—C18111.98 (17)
C3—C2—C16128.0 (2)O4—C20—C21108.4 (3)
N1—C2—C16123.20 (19)O4—C20—H20A110.0
C2—C3—C4107.82 (17)C21—C20—H20A110.0
C2—C3—C17129.75 (18)O4—C20—H20B110.0
C4—C3—C17122.24 (17)C21—C20—H20B110.0
C5—C4—C9120.75 (17)H20A—C20—H20B108.4
C5—C4—C3108.18 (16)C20—C21—H21A109.5
C9—C4—C3131.05 (17)C20—C21—H21B109.5
C4—C5—C6121.34 (17)H21A—C21—H21B109.5
C4—C5—N1106.95 (16)C20—C21—H21C109.5
C6—C5—N1131.70 (17)H21A—C21—H21C109.5
C7—C6—C5117.28 (18)H21B—C21—H21C109.5
C7—C6—H6121.4O5—C22—O6123.5 (2)
C5—C6—H6121.4O5—C22—C18122.8 (2)
C6—C7—C8122.06 (18)O6—C22—C18113.66 (19)
C6—C7—H7119.0O6—C23—C24109.3 (5)
C8—C7—H7119.0O6—C23—C24'107.6 (5)
O7—C8—C9124.44 (18)O6—C23—H23A109.8
O7—C8—C7114.95 (17)C24—C23—H23A109.8
C9—C8—C7120.60 (18)C24'—C23—H23A140.2
C8—C9—C4117.94 (17)O6—C23—H23B109.8
C8—C9—H9121.0C24—C23—H23B109.8
C4—C9—H9121.0C24'—C23—H23B70.5
C15—C10—C11121.2 (2)H23A—C23—H23B108.3
C15—C10—S1118.66 (17)C23—C24—H24A109.5
C11—C10—S1120.13 (16)C23—C24—H24B109.5
C12—C11—C10119.4 (2)H24A—C24—H24B109.5
C12—C11—H11120.3C23—C24—H24C109.5
C10—C11—H11120.3H24A—C24—H24C109.5
C13—C12—C11119.9 (2)H24B—C24—H24C109.5
C13—C12—H12120.1C23—C24'—H24D109.5
C11—C12—H12120.1C23—C24'—H24E109.5
C14—C13—C12120.7 (2)H24D—C24'—H24E109.5
C14—C13—H13119.7C23—C24'—H24F109.5
C12—C13—H13119.7H24D—C24'—H24F109.5
C13—C14—C15120.5 (2)H24E—C24'—H24F109.5
C13—C14—H14119.7O7—C25—H25A109.5
C15—C14—H14119.7O7—C25—H25B109.5
C10—C15—C14118.3 (2)H25A—C25—H25B109.5
C10—C15—H15120.8O7—C25—H25C109.5
C14—C15—H15120.8H25A—C25—H25C109.5
C2—C16—H16A109.5H25B—C25—H25C109.5
C2—C16—H16B109.5C2—N1—C5108.32 (15)
H16A—C16—H16B109.5C2—N1—S1125.65 (13)
C2—C16—H16C109.5C5—N1—S1123.91 (13)
H16A—C16—H16C109.5C19—O4—C20116.42 (19)
H16B—C16—H16C109.5C22—O6—C23119.1 (2)
C18—C17—C3130.42 (19)C8—O7—C25117.79 (17)
C18—C17—H17114.8O1—S1—O2120.42 (11)
C3—C17—H17114.8O1—S1—N1106.20 (9)
C17—C18—C22121.49 (19)O2—S1—N1107.38 (10)
C17—C18—C19123.87 (18)O1—S1—C10108.77 (10)
C22—C18—C19114.37 (17)O2—S1—C10108.50 (10)
O3—C19—O4123.8 (2)N1—S1—C10104.43 (9)
O3—C19—C18124.2 (2)
N1—C2—C3—C42.4 (2)C17—C18—C19—O4−122.7 (2)
C16—C2—C3—C4−173.8 (2)C22—C18—C19—O463.2 (2)
N1—C2—C3—C17177.27 (18)C17—C18—C22—O5−168.7 (3)
C16—C2—C3—C171.0 (3)C19—C18—C22—O55.6 (4)
C2—C3—C4—C5−1.4 (2)C17—C18—C22—O69.7 (3)
C17—C3—C4—C5−176.76 (16)C19—C18—C22—O6−176.0 (2)
C2—C3—C4—C9−179.75 (18)C3—C2—N1—C5−2.5 (2)
C17—C3—C4—C94.9 (3)C16—C2—N1—C5173.94 (19)
C9—C4—C5—C6−0.6 (3)C3—C2—N1—S1−166.42 (13)
C3—C4—C5—C6−179.14 (16)C16—C2—N1—S110.0 (3)
C9—C4—C5—N1178.41 (15)C4—C5—N1—C21.58 (19)
C3—C4—C5—N1−0.13 (19)C6—C5—N1—C2−179.56 (19)
C4—C5—C6—C7−1.1 (3)C4—C5—N1—S1165.83 (13)
N1—C5—C6—C7−179.83 (18)C6—C5—N1—S1−15.3 (3)
C5—C6—C7—C81.4 (3)O3—C19—O4—C20−0.6 (3)
C6—C7—C8—O7179.45 (18)C18—C19—O4—C20179.8 (2)
C6—C7—C8—C90.0 (3)C21—C20—O4—C19−169.9 (3)
O7—C8—C9—C4178.90 (17)O5—C22—O6—C231.6 (5)
C7—C8—C9—C4−1.7 (3)C18—C22—O6—C23−176.8 (3)
C5—C4—C9—C82.0 (3)C24—C23—O6—C2275.7 (6)
C3—C4—C9—C8−179.87 (18)C24'—C23—O6—C22121.2 (6)
C15—C10—C11—C12−0.2 (3)C9—C8—O7—C256.9 (3)
S1—C10—C11—C12179.85 (18)C7—C8—O7—C25−172.56 (19)
C10—C11—C12—C130.0 (4)C2—N1—S1—O1−167.59 (16)
C11—C12—C13—C140.2 (4)C5—N1—S1—O130.90 (18)
C12—C13—C14—C15−0.1 (5)C2—N1—S1—O2−37.54 (18)
C11—C10—C15—C140.3 (4)C5—N1—S1—O2160.94 (15)
S1—C10—C15—C14−179.8 (2)C2—N1—S1—C1077.54 (17)
C13—C14—C15—C10−0.1 (4)C5—N1—S1—C10−83.98 (16)
C2—C3—C17—C1841.7 (3)C15—C10—S1—O1−34.6 (2)
C4—C3—C17—C18−144.1 (2)C11—C10—S1—O1145.35 (17)
C3—C17—C18—C22−179.7 (2)C15—C10—S1—O2−167.21 (18)
C3—C17—C18—C196.6 (4)C11—C10—S1—O212.7 (2)
C17—C18—C19—O357.7 (3)C15—C10—S1—N178.50 (19)
C22—C18—C19—O3−116.4 (2)C11—C10—S1—N1−101.59 (18)
D—H···AD—HH···AD···AD—H···A
C6—H6···O10.932.322.901 (3)120
C14—H14···O5i0.932.423.349 (3)173
C25—H25C···Cg1ii0.962.923.515 (3)140
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1/C2–C5 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O10.932.322.901 (3)120
C14—H14⋯O5i0.932.423.349 (3)173
C25—H25CCg1ii0.962.923.515 (3)140

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethyl 2-[(N-meth-oxy-N-methyl-carbamo-yl)meth-yl]-1-(phenyl-sulfon-yl)-1H-indole-3-carboxyl-ate.

Authors:  G Chakkaravarthi; V Dhayalan; A K Mohanakrishnan; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-21

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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