Literature DB >> 21202648

Ethyl 2-[(N-meth-oxy-N-methyl-carbamo-yl)meth-yl]-1-(phenyl-sulfon-yl)-1H-indole-3-carboxyl-ate.

G Chakkaravarthi, V Dhayalan, A K Mohanakrishnan, V Manivannan.   

Abstract

In the title compound, C(21)H(22)N(2)O(6)S, the phenyl ring forms a dihedral angle of 83.17 (7)° with the indole ring system. The methyl group of the ester unit is disordered over two positions with site occupancies of 0.635 (6) and 0.365 (6). In the crystal structure, weak intra-molecular C-H⋯O inter-actions and inter-molecular C-H⋯O, C-H⋯N and C-H⋯π inter-actions are observed.

Entities:  

Year:  2008        PMID: 21202648      PMCID: PMC2961377          DOI: 10.1107/S1600536808014979

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activity, see: Merck (1973 ▶, 1974 ▶); Hendi & Basangoudar (1981 ▶); Kolocouris et al. (1994 ▶); Uchida et al. (1989 ▶); Shaaban et al. (1977 ▶). For the structures of closely related compounds, see: Chakkaravarthi et al. (2007 ▶, 2008 ▶).

Experimental

Crystal data

C21H22N2O6S M = 430.47 Monoclinic, a = 8.5827 (3) Å b = 11.0783 (5) Å c = 21.7433 (8) Å β = 97.091 (2)° V = 2051.58 (14) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 295 (2) K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEX2 diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.914, T max = 0.961 29808 measured reflections 7666 independent reflections 3947 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.238 S = 1.04 7666 reflections 285 parameters 20 restraints H-atom parameters constrained Δρmax = 0.82 e Å−3 Δρmin = −0.62 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808014979/is2294sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808014979/is2294Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H22N2O6SF000 = 904
Mr = 430.47Dx = 1.394 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8381 reflections
a = 8.5827 (3) Åθ = 2.4–29.8º
b = 11.0783 (5) ŵ = 0.20 mm1
c = 21.7433 (8) ÅT = 295 (2) K
β = 97.091 (2)ºBlock, colourless
V = 2051.58 (14) Å30.30 × 0.20 × 0.20 mm
Z = 4
Bruker KappaAPEX2 diffractometer7666 independent reflections
Radiation source: fine-focus sealed tube3947 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.029
T = 295(2) Kθmax = 32.9º
ω and φ scansθmin = 1.9º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −13→12
Tmin = 0.914, Tmax = 0.961k = −16→16
29808 measured reflectionsl = −33→32
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.064H-atom parameters constrained
wR(F2) = 0.238  w = 1/[σ2(Fo2) + (0.1138P)2 + 0.5762P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
7666 reflectionsΔρmax = 0.82 e Å3
285 parametersΔρmin = −0.62 e Å3
20 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
xyzUiso*/UeqOcc. (<1)
S10.67495 (6)0.03757 (6)0.79732 (2)0.05333 (19)
O10.5718 (2)0.1330 (2)0.77694 (8)0.0696 (5)
O20.6406 (2)−0.08033 (19)0.77500 (8)0.0702 (5)
O30.7525 (2)0.34032 (17)0.89517 (10)0.0685 (5)
O40.36103 (19)0.42442 (18)0.88546 (8)0.0636 (5)
O50.5791 (3)0.2410 (2)1.02766 (10)0.0887 (7)
N10.6850 (2)0.03196 (17)0.87461 (8)0.0500 (4)
N20.5241 (2)0.4359 (2)0.89484 (10)0.0581 (5)
C10.8659 (2)0.0746 (2)0.78344 (10)0.0515 (5)
C20.9197 (3)0.0215 (3)0.73297 (13)0.0733 (8)
H20.8590−0.03520.70930.088*
C31.0668 (4)0.0543 (4)0.71811 (17)0.0957 (11)
H31.10610.01880.68450.115*
C41.1538 (3)0.1389 (3)0.75290 (16)0.0841 (9)
H41.25200.16060.74260.101*
C51.0981 (3)0.1920 (3)0.80265 (15)0.0694 (7)
H51.15880.24940.82580.083*
C60.9522 (3)0.1609 (2)0.81871 (12)0.0602 (6)
H60.91330.19710.85230.072*
C70.6276 (2)0.1142 (2)0.91567 (10)0.0484 (5)
C80.6784 (3)0.0778 (2)0.97433 (10)0.0508 (5)
C90.7702 (3)−0.0301 (2)0.97205 (10)0.0500 (5)
C100.8521 (3)−0.1040 (3)1.01676 (12)0.0647 (7)
H100.8514−0.08821.05870.078*
C110.9338 (4)−0.2009 (3)0.99756 (16)0.0754 (8)
H110.9901−0.25041.02690.090*
C120.9333 (4)−0.2257 (3)0.93565 (16)0.0764 (8)
H120.9885−0.29260.92420.092*
C130.8548 (3)−0.1556 (2)0.89043 (14)0.0668 (7)
H130.8556−0.17280.84860.080*
C140.7736 (3)−0.0572 (2)0.90994 (11)0.0515 (5)
C150.5211 (3)0.2171 (2)0.89660 (11)0.0553 (5)
H15A0.44370.22430.92530.066*
H15B0.46590.20110.85580.066*
C160.6103 (3)0.3346 (2)0.89525 (10)0.0524 (5)
C170.5823 (4)0.5537 (3)0.88116 (14)0.0696 (7)
H17A0.69360.55700.89360.104*
H17B0.53120.61390.90340.104*
H17C0.56100.56890.83750.104*
C180.2965 (4)0.4541 (3)0.94111 (15)0.0785 (8)
H18A0.33490.39830.97320.118*
H18B0.18410.44950.93380.118*
H18C0.32730.53460.95370.118*
C190.6408 (3)0.1433 (3)1.02879 (12)0.0629 (6)
O60.6834 (2)0.0827 (2)1.08088 (8)0.0821 (6)
C200.6451 (4)0.1324 (5)1.13690 (14)0.1112 (13)
H20A0.62240.06771.16450.133*0.635 (6)
H20B0.55150.18161.12840.133*0.635 (6)
H20C0.54090.10421.14260.133*0.365 (6)
H20D0.63840.21931.13160.133*0.365 (6)
C210.7741 (6)0.2069 (7)1.1677 (3)0.1115 (15)0.635 (6)
H21A0.86660.15821.17670.167*0.635 (6)
H21B0.74450.23891.20560.167*0.635 (6)
H21C0.79520.27221.14090.167*0.635 (6)
C21A0.7493 (10)0.1083 (14)1.1950 (3)0.1106 (15)0.365 (6)
H21D0.72710.02961.21020.166*0.365 (6)
H21E0.73150.16801.22540.166*0.365 (6)
H21F0.85680.11181.18720.166*0.365 (6)
U11U22U33U12U13U23
S10.0435 (3)0.0740 (4)0.0426 (3)−0.0057 (2)0.0057 (2)−0.0026 (2)
O10.0498 (9)0.1027 (14)0.0557 (9)0.0104 (9)0.0048 (7)0.0120 (9)
O20.0692 (11)0.0873 (13)0.0553 (10)−0.0237 (10)0.0127 (8)−0.0188 (9)
O30.0493 (9)0.0661 (11)0.0919 (13)0.0024 (8)0.0161 (8)−0.0005 (10)
O40.0513 (9)0.0826 (12)0.0564 (9)0.0145 (8)0.0052 (7)−0.0038 (8)
O50.1006 (16)0.0973 (17)0.0711 (13)0.0049 (13)0.0215 (11)−0.0281 (12)
N10.0524 (10)0.0554 (11)0.0425 (9)0.0009 (8)0.0065 (7)−0.0044 (8)
N20.0512 (10)0.0622 (12)0.0624 (12)0.0070 (9)0.0126 (9)0.0021 (9)
C10.0411 (10)0.0663 (14)0.0475 (11)−0.0022 (9)0.0073 (8)0.0010 (10)
C20.0582 (14)0.100 (2)0.0646 (15)−0.0152 (14)0.0181 (12)−0.0212 (15)
C30.0676 (18)0.140 (3)0.086 (2)−0.015 (2)0.0361 (16)−0.026 (2)
C40.0518 (14)0.110 (3)0.093 (2)−0.0117 (15)0.0209 (14)0.0050 (19)
C50.0463 (12)0.0724 (17)0.0877 (19)−0.0074 (11)0.0009 (12)−0.0014 (14)
C60.0494 (12)0.0692 (15)0.0617 (14)−0.0006 (10)0.0059 (10)−0.0083 (11)
C70.0442 (10)0.0533 (12)0.0487 (11)−0.0063 (9)0.0099 (8)−0.0046 (9)
C80.0495 (11)0.0593 (13)0.0441 (10)−0.0119 (9)0.0079 (8)−0.0049 (9)
C90.0477 (10)0.0534 (12)0.0486 (11)−0.0140 (9)0.0045 (8)0.0002 (9)
C100.0635 (14)0.0711 (16)0.0574 (13)−0.0178 (12)−0.0003 (11)0.0120 (12)
C110.0720 (17)0.0644 (17)0.086 (2)−0.0079 (13)−0.0068 (14)0.0207 (15)
C120.0746 (18)0.0573 (15)0.096 (2)0.0052 (13)0.0070 (15)0.0031 (15)
C130.0689 (15)0.0629 (15)0.0688 (16)0.0048 (12)0.0093 (12)−0.0071 (12)
C140.0495 (11)0.0527 (12)0.0522 (12)−0.0051 (9)0.0052 (9)0.0000 (9)
C150.0435 (10)0.0647 (14)0.0580 (13)0.0024 (10)0.0067 (9)−0.0059 (11)
C160.0504 (11)0.0612 (13)0.0462 (11)0.0039 (10)0.0080 (8)−0.0028 (10)
C170.0807 (18)0.0645 (16)0.0678 (16)0.0088 (13)0.0265 (13)0.0075 (12)
C180.0718 (17)0.091 (2)0.0787 (19)0.0057 (15)0.0315 (14)−0.0056 (16)
C190.0539 (13)0.0821 (18)0.0542 (13)−0.0131 (12)0.0123 (10)−0.0155 (12)
O60.0712 (12)0.1331 (19)0.0432 (9)−0.0085 (12)0.0115 (8)−0.0107 (10)
C200.0693 (16)0.209 (4)0.0573 (15)0.010 (2)0.0169 (12)−0.032 (2)
C210.0722 (19)0.205 (4)0.0585 (18)0.007 (2)0.0138 (15)−0.036 (2)
C21A0.071 (2)0.206 (4)0.057 (2)0.008 (2)0.0164 (17)−0.034 (2)
S1—O21.412 (2)C10—H100.9300
S1—O11.415 (2)C11—C121.373 (5)
S1—N11.6732 (19)C11—H110.9300
S1—C11.751 (2)C12—C131.364 (4)
O3—C161.222 (3)C12—H120.9300
O4—N21.395 (3)C13—C141.388 (4)
O4—C181.430 (3)C13—H130.9300
O5—C191.204 (4)C15—C161.513 (3)
N1—C71.407 (3)C15—H15A0.9700
N1—C141.414 (3)C15—H15B0.9700
N2—C161.343 (3)C17—H17A0.9600
N2—C171.442 (4)C17—H17B0.9600
C1—C21.374 (4)C17—H17C0.9600
C1—C61.383 (3)C18—H18A0.9600
C2—C31.390 (4)C18—H18B0.9600
C2—H20.9300C18—H18C0.9600
C3—C41.366 (5)C19—O61.328 (4)
C3—H30.9300O6—C201.412 (3)
C4—C51.368 (5)C20—C211.474 (3)
C4—H40.9300C20—C21A1.479 (3)
C5—C61.385 (4)C20—H20A0.9700
C5—H50.9300C20—H20B0.9700
C6—H60.9300C20—H20C0.9700
C7—C81.358 (3)C20—H20D0.9700
C7—C151.487 (3)C21—H21A0.9600
C8—C91.435 (3)C21—H21B0.9600
C8—C191.458 (3)C21—H21C0.9600
C9—C141.387 (3)C21A—H21D0.9600
C9—C101.393 (3)C21A—H21E0.9600
C10—C111.375 (5)C21A—H21F0.9600
O2—S1—O1119.21 (13)C14—C13—H13121.7
O2—S1—N1107.07 (11)C9—C14—C13122.6 (2)
O1—S1—N1107.15 (10)C9—C14—N1107.6 (2)
O2—S1—C1108.50 (12)C13—C14—N1129.7 (2)
O1—S1—C1109.49 (12)C7—C15—C16111.70 (18)
N1—S1—C1104.39 (10)C7—C15—H15A109.3
N2—O4—C18110.0 (2)C16—C15—H15A109.3
C7—N1—C14108.36 (18)C7—C15—H15B109.3
C7—N1—S1129.40 (16)C16—C15—H15B109.3
C14—N1—S1121.93 (15)H15A—C15—H15B107.9
C16—N2—O4117.8 (2)O3—C16—N2120.4 (2)
C16—N2—C17123.6 (2)O3—C16—C15123.5 (2)
O4—N2—C17114.8 (2)N2—C16—C15116.1 (2)
C2—C1—C6121.9 (2)N2—C17—H17A109.5
C2—C1—S1116.83 (19)N2—C17—H17B109.5
C6—C1—S1121.00 (18)H17A—C17—H17B109.5
C1—C2—C3118.6 (3)N2—C17—H17C109.5
C1—C2—H2120.7H17A—C17—H17C109.5
C3—C2—H2120.7H17B—C17—H17C109.5
C4—C3—C2120.0 (3)O4—C18—H18A109.5
C4—C3—H3120.0O4—C18—H18B109.5
C2—C3—H3120.0H18A—C18—H18B109.5
C3—C4—C5120.8 (3)O4—C18—H18C109.5
C3—C4—H4119.6H18A—C18—H18C109.5
C5—C4—H4119.6H18B—C18—H18C109.5
C4—C5—C6120.5 (3)O5—C19—O6123.1 (3)
C4—C5—H5119.8O5—C19—C8124.9 (3)
C6—C5—H5119.8O6—C19—C8112.1 (3)
C1—C6—C5118.1 (2)C19—O6—C20118.0 (3)
C1—C6—H6120.9O6—C20—C21111.7 (3)
C5—C6—H6120.9O6—C20—C21A119.1 (5)
C8—C7—N1107.8 (2)C21—C20—C21A51.1 (6)
C8—C7—C15127.3 (2)O6—C20—H20A109.3
N1—C7—C15124.8 (2)C21—C20—H20A109.3
C7—C8—C9109.2 (2)O6—C20—H20B109.3
C7—C8—C19122.5 (2)C21—C20—H20B109.3
C9—C8—C19128.3 (2)H20A—C20—H20B108.0
C14—C9—C10118.8 (2)O6—C20—H20C107.5
C14—C9—C8106.96 (19)C21A—C20—H20C107.5
C10—C9—C8134.2 (2)O6—C20—H20D107.5
C11—C10—C9118.7 (3)C21A—C20—H20D107.5
C11—C10—H10120.7H20C—C20—H20D107.0
C9—C10—H10120.7C20—C21—H21A109.5
C12—C11—C10120.9 (3)C20—C21—H21B109.5
C12—C11—H11119.6C20—C21—H21C109.5
C10—C11—H11119.6C20—C21A—H21D109.5
C13—C12—C11122.3 (3)C20—C21A—H21E109.5
C13—C12—H12118.9H21D—C21A—H21E109.5
C11—C12—H12118.9C20—C21A—H21F109.5
C12—C13—C14116.7 (3)H21D—C21A—H21F109.5
C12—C13—H13121.7H21E—C21A—H21F109.5
O2—S1—N1—C7−138.9 (2)C19—C8—C9—C10−1.3 (4)
O1—S1—N1—C7−9.9 (2)C14—C9—C10—C110.3 (3)
C1—S1—N1—C7106.2 (2)C8—C9—C10—C11−177.9 (2)
O2—S1—N1—C1448.3 (2)C9—C10—C11—C12−0.9 (4)
O1—S1—N1—C14177.31 (18)C10—C11—C12—C130.9 (5)
C1—S1—N1—C14−66.6 (2)C11—C12—C13—C14−0.3 (4)
C18—O4—N2—C16111.0 (3)C10—C9—C14—C130.3 (3)
C18—O4—N2—C17−90.2 (3)C8—C9—C14—C13178.9 (2)
O2—S1—C1—C229.4 (3)C10—C9—C14—N1−178.86 (19)
O1—S1—C1—C2−102.2 (2)C8—C9—C14—N1−0.3 (2)
N1—S1—C1—C2143.3 (2)C12—C13—C14—C9−0.3 (4)
O2—S1—C1—C6−155.9 (2)C12—C13—C14—N1178.7 (3)
O1—S1—C1—C672.4 (2)C7—N1—C14—C90.2 (2)
N1—S1—C1—C6−42.0 (2)S1—N1—C14—C9174.29 (15)
C6—C1—C2—C31.4 (5)C7—N1—C14—C13−178.9 (2)
S1—C1—C2—C3176.0 (3)S1—N1—C14—C13−4.8 (3)
C1—C2—C3—C4−0.8 (6)C8—C7—C15—C1685.8 (3)
C2—C3—C4—C50.2 (6)N1—C7—C15—C16−98.8 (2)
C3—C4—C5—C60.0 (5)O4—N2—C16—O3170.5 (2)
C2—C1—C6—C5−1.2 (4)C17—N2—C16—O313.6 (4)
S1—C1—C6—C5−175.6 (2)O4—N2—C16—C15−10.3 (3)
C4—C5—C6—C10.5 (4)C17—N2—C16—C15−167.1 (2)
C14—N1—C7—C80.0 (2)C7—C15—C16—O316.2 (3)
S1—N1—C7—C8−173.54 (16)C7—C15—C16—N2−163.0 (2)
C14—N1—C7—C15−176.2 (2)C7—C8—C19—O5−9.2 (4)
S1—N1—C7—C1510.3 (3)C9—C8—C19—O5170.6 (3)
N1—C7—C8—C9−0.2 (2)C7—C8—C19—O6171.1 (2)
C15—C7—C8—C9175.9 (2)C9—C8—C19—O6−9.1 (3)
N1—C7—C8—C19179.7 (2)O5—C19—O6—C204.1 (4)
C15—C7—C8—C19−4.3 (4)C8—C19—O6—C20−176.2 (2)
C7—C8—C9—C140.3 (2)C19—O6—C20—C21−93.0 (5)
C19—C8—C9—C14−179.6 (2)C19—O6—C20—C21A−149.5 (7)
C7—C8—C9—C10178.6 (2)
D—H···AD—HH···AD···AD—H···A
C2—H2···O20.932.542.896 (3)103
C6—H6···O30.932.373.218 (3)152
C10—H10···O60.932.462.969 (4)114
C13—H13···O20.932.513.039 (4)117
C15—H15A···O50.972.392.844 (3)108
C15—H15B···O10.972.172.847 (3)126
C17—H17B···O5i0.962.473.420 (3)173
C20—H20C···N1ii0.972.453.351 (4)155
C20—H20C···O2ii0.972.533.343 (4)142
C21A—H21F···Cgiii0.962.803.196 (13)105
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O20.932.542.896 (3)103
C6—H6⋯O30.932.373.218 (3)152
C10—H10⋯O60.932.462.969 (4)114
C13—H13⋯O20.932.513.039 (4)117
C15—H15A⋯O50.972.392.844 (3)108
C15—H15B⋯O10.972.172.847 (3)126
C17—H17B⋯O5i0.962.473.420 (3)173
C20—H20C⋯N1ii0.972.453.351 (4)155
C20—H20C⋯O2ii0.972.533.343 (4)142
C21A—H21FCgiii0.962.803.196 (13)105

Symmetry codes: (i) ; (ii) ; (iii) . Cg is the centroid of the C1–C6 phenyl ring.

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Studies on proton pump inhibitors. II. Synthesis and antiulcer activity of 8-[(2-benzimidazolyl)sulfinylmethyl]-1,2,3,4-tetrahydroquinolines and related compounds.

Authors:  M Uchida; M Chihiro; S Morita; T Kanbe; H Yamashita; K Yamasaki; Y Yabuuchi; K Nakagawa
Journal:  Chem Pharm Bull (Tokyo)       Date:  1989-08       Impact factor: 1.645

3.  Synthesis and antiviral activity evaluation of some aminoadamantane derivatives.

Authors:  N Kolocouris; G B Foscolos; A Kolocouris; P Marakos; N Pouli; G Fytas; S Ikeda; E De Clercq
Journal:  J Med Chem       Date:  1994-09-02       Impact factor: 7.446

4.  Synthesis of certain 4-oxo-1.2.3.4-tetrahydroquinoline and benzazocine derivatives likely to possess analgesic activity.

Authors:  M A Shaaban; K M Ghoneim; M Khalifa
Journal:  Pharmazie       Date:  1977-02       Impact factor: 1.267

5.  Ethyl 2-[(phenyl-sulfan-yl)meth-yl]-1-(phenyl-sulfon-yl)-1H-indole-3-carboxyl-ate.

Authors:  G Chakkaravarthi; V Dhayalan; A K Mohanakrishnan; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-09
  5 in total
  1 in total

1.  Diethyl 2-[(5-meth-oxy-2-methyl-1-phenyl-sulfonyl-1H-indol-3-yl)methyl-ene]malonate.

Authors:  T Kavitha; M Thenmozhi; V Dhayalan; A K Mohanakrishnan; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29
  1 in total

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