Literature DB >> 21583218

(7R,8S,8aS)-8-Hydr-oxy-7-phenyl-perhydro-indolizin-3-one.

Lubomír Svorc, Viktor Vrábel, Stefan Marchalín, Peter Safář, Jozef Kožíšek.   

Abstract

In the title compound, C(14)H(17)NO(2), the six-membered ring of the indolizine system adopts a chair conformation. In the crystal, mol-ecules form chains parallel to the b axis via inter-molecular O-H⋯O hydrogen bonds. The absolute mol-ecular configuration was assigned from the synthesis.

Entities:  

Year:  2009        PMID: 21583218      PMCID: PMC2969627          DOI: 10.1107/S1600536809018455

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For industrial uses of indolizines, see: Jaung & Jung (2003 ▶); Rotaru et al. (2005 ▶); Delattre et al. (2005 ▶); Kelin et al. (2001 ▶). For biological uses, see: Nash et al. (1988 ▶); Molyneux & James (1982 ▶); Harrell (1970 ▶); Ruprecht et al. (1989 ▶); Liu et al. (2007 ▶); Smith et al. (2007 ▶); Gupta et al. (2003 ▶); Rosseels et al. (1982 ▶); Oslund et al. (2008 ▶); Ostby et al. (2000 ▶). For synthesis of indolizines, see: Chuprakov & Gevorgyan (2007 ▶); Yan & Liu (2007 ▶). For the synthesis methods used, see: Šafář et al. (2009 ▶). For structures related to the title compound, see: Švorc et al. (2009 ▶). For comparison of mol­ecular parameters, see: Camus et al. (2003 ▶); Lokaj et al. (1999 ▶); Brown & Corbridge (1954 ▶); Pedersen (1967 ▶). For a general analysis of puckering, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C14H17NO2 M = 231.29 Orthorhombic, a = 11.4164 (3) Å b = 6.6372 (2) Å c = 15.5118 (4) Å V = 1175.38 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.60 × 0.56 × 0.13 mm

Data collection

Oxford Diffraction Gemini R CCD diffractometer Absorption correction: analytical (Clark & Reid, 1995 ▶) T min = 0.901, T max = 0.989 26298 measured reflections 1632 independent reflections 1128 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.101 S = 1.03 1632 reflections 157 parameters 1 restraint H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.12 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2001 ▶); software used to prepare material for publication: enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809018455/bg2260sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018455/bg2260Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H17NO2F(000) = 496
Mr = 231.29Dx = 1.307 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 13180 reflections
a = 11.4164 (3) Åθ = 3.3–29.4°
b = 6.6372 (2) ŵ = 0.09 mm1
c = 15.5118 (4) ÅT = 298 K
V = 1175.38 (6) Å3Block, white
Z = 40.60 × 0.56 × 0.13 mm
Oxford Diffraction Gemini R CCD diffractometer1632 independent reflections
Radiation source: fine-focus sealed tube1128 reflections with I > 2σ(I)
graphiteRint = 0.023
Detector resolution: 10.4340 pixels mm-1θmax = 29.4°, θmin = 3.6°
Rotation method data acquisition using ω and φ scansh = −15→15
Absorption correction: analytical (Clark & Reid, 1995)k = −9→9
Tmin = 0.901, Tmax = 0.989l = −20→21
26298 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.101w = 1/[σ2(Fo2) + (0.0644P)2 + 0.0334P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
1632 reflectionsΔρmax = 0.17 e Å3
157 parametersΔρmin = −0.12 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.014 (4)
Experimental. face-indexed (CrysAlis RED; Oxford Diffraction, 2006)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.2640 (2)−0.3204 (3)0.32882 (13)0.0425 (5)
C30.21718 (19)−0.1773 (3)0.26133 (17)0.0490 (5)
H3A0.1398−0.12960.27730.059*
H3B0.2121−0.24380.20580.059*
C40.3027 (2)−0.0043 (4)0.25750 (16)0.0590 (6)
H4A0.26260.12270.26700.071*
H4B0.34090.00030.20170.071*
C50.3932 (2)−0.0428 (3)0.32948 (15)0.0466 (5)
H50.4708−0.05780.30330.056*
C60.40010 (17)0.1156 (3)0.40092 (13)0.0400 (4)
H60.43400.23930.37710.048*
C70.47970 (18)0.0382 (3)0.47386 (13)0.0421 (5)
H70.55580.00750.44780.051*
C80.4309 (2)−0.1608 (3)0.50890 (16)0.0514 (6)
H8A0.4814−0.21000.55450.062*
H8B0.3537−0.13780.53320.062*
C90.4226 (2)−0.3184 (3)0.43821 (15)0.0557 (6)
H9A0.5006−0.35690.41970.067*
H9B0.3832−0.43750.46000.067*
C100.50152 (16)0.1935 (3)0.54318 (14)0.0407 (5)
C110.42606 (19)0.2235 (4)0.61193 (16)0.0507 (5)
H110.35820.14640.61590.061*
C120.4494 (2)0.3654 (4)0.67466 (16)0.0580 (6)
H120.39760.38330.72030.070*
C130.5498 (2)0.4808 (4)0.66972 (17)0.0599 (7)
H130.56620.57540.71220.072*
C140.6248 (2)0.4553 (4)0.60216 (17)0.0623 (7)
H140.69190.53430.59820.075*
C150.60156 (19)0.3120 (4)0.53928 (16)0.0501 (5)
H150.65380.29510.49380.060*
N10.35736 (17)−0.2359 (3)0.36550 (12)0.0473 (4)
O10.22237 (14)−0.4869 (2)0.34724 (11)0.0545 (5)
O20.28771 (12)0.1598 (2)0.43433 (11)0.0496 (4)
H20.26470.26730.41460.074*
U11U22U33U12U13U23
C20.0503 (12)0.0381 (10)0.0391 (11)0.0064 (9)0.0004 (9)−0.0066 (9)
C30.0507 (13)0.0483 (11)0.0480 (12)0.0040 (9)−0.0032 (10)0.0014 (10)
C40.0858 (18)0.0477 (12)0.0436 (12)−0.0088 (11)−0.0148 (13)0.0042 (10)
C50.0585 (13)0.0404 (10)0.0408 (10)−0.0013 (9)−0.0015 (10)0.0023 (9)
C60.0488 (11)0.0331 (10)0.0382 (10)−0.0015 (8)0.0012 (9)0.0038 (8)
C70.0395 (10)0.0449 (12)0.0419 (11)0.0035 (8)−0.0023 (9)−0.0003 (9)
C80.0681 (15)0.0384 (11)0.0478 (11)0.0032 (10)−0.0163 (11)0.0054 (9)
C90.0736 (15)0.0366 (11)0.0570 (14)0.0078 (9)−0.0211 (12)0.0039 (10)
C100.0405 (10)0.0417 (11)0.0397 (10)0.0017 (8)−0.0059 (9)0.0024 (8)
C110.0523 (11)0.0496 (12)0.0501 (12)0.0022 (9)0.0080 (11)−0.0004 (10)
C120.0783 (16)0.0509 (12)0.0447 (12)0.0132 (12)0.0045 (12)−0.0045 (11)
C130.0818 (17)0.0480 (12)0.0500 (13)0.0058 (11)−0.0209 (13)−0.0055 (11)
C140.0621 (14)0.0556 (14)0.0693 (16)−0.0098 (11)−0.0195 (14)0.0004 (12)
C150.0453 (11)0.0587 (13)0.0464 (12)−0.0024 (10)−0.0031 (10)0.0035 (10)
N10.0593 (11)0.0359 (9)0.0465 (9)0.0005 (8)−0.0100 (8)0.0014 (8)
O10.0640 (11)0.0413 (8)0.0582 (11)−0.0047 (6)−0.0065 (8)0.0027 (7)
O20.0456 (8)0.0486 (8)0.0546 (9)0.0083 (6)0.0023 (7)0.0085 (7)
C2—O11.237 (2)C8—C91.518 (3)
C2—N11.332 (3)C8—H8A0.9700
C2—C31.511 (3)C8—H8B0.9700
C3—C41.508 (3)C9—N11.458 (3)
C3—H3A0.9700C9—H9A0.9700
C3—H3B0.9700C9—H9B0.9700
C4—C51.542 (3)C10—C111.385 (3)
C4—H4A0.9700C10—C151.388 (3)
C4—H4B0.9700C11—C121.380 (3)
C5—N11.457 (3)C11—H110.9300
C5—C61.530 (3)C12—C131.380 (4)
C5—H50.9800C12—H120.9300
C6—O21.414 (2)C13—C141.364 (4)
C6—C71.540 (3)C13—H130.9300
C6—H60.9800C14—C151.388 (3)
C7—C101.510 (3)C14—H140.9300
C7—C81.533 (3)C15—H150.9300
C7—H70.9800O2—H20.8200
O1—C2—N1125.78 (19)C9—C8—H8A109.4
O1—C2—C3125.9 (2)C7—C8—H8A109.4
N1—C2—C3108.33 (17)C9—C8—H8B109.4
C2—C3—C4106.09 (18)C7—C8—H8B109.4
C2—C3—H3A110.5H8A—C8—H8B108.0
C4—C3—H3A110.5N1—C9—C8109.40 (16)
C2—C3—H3B110.5N1—C9—H9A109.8
C4—C3—H3B110.5C8—C9—H9A109.8
H3A—C3—H3B108.7N1—C9—H9B109.8
C3—C4—C5106.18 (18)C8—C9—H9B109.8
C3—C4—H4A110.5H9A—C9—H9B108.2
C5—C4—H4A110.5C11—C10—C15117.7 (2)
C3—C4—H4B110.5C11—C10—C7122.92 (19)
C5—C4—H4B110.5C15—C10—C7119.4 (2)
H4A—C4—H4B108.7C10—C11—C12121.4 (2)
N1—C5—C6109.98 (17)C10—C11—H11119.3
N1—C5—C4103.63 (18)C12—C11—H11119.3
C6—C5—C4116.45 (19)C13—C12—C11120.0 (2)
N1—C5—H5108.8C13—C12—H12120.0
C6—C5—H5108.8C11—C12—H12120.0
C4—C5—H5108.8C14—C13—C12119.7 (2)
O2—C6—C5111.15 (17)C14—C13—H13120.2
O2—C6—C7109.59 (16)C12—C13—H13120.2
C5—C6—C7109.49 (16)C13—C14—C15120.3 (2)
O2—C6—H6108.9C13—C14—H14119.9
C5—C6—H6108.9C15—C14—H14119.9
C7—C6—H6108.9C10—C15—C14121.0 (2)
C10—C7—C6113.12 (15)C10—C15—H15119.5
C10—C7—C8113.31 (18)C14—C15—H15119.5
C6—C7—C8109.48 (17)C2—N1—C5115.52 (17)
C10—C7—H7106.8C2—N1—C9125.54 (18)
C6—C7—H7106.8C5—N1—C9118.92 (18)
C8—C7—H7106.8C6—O2—H2109.5
C9—C8—C7111.1 (2)
O1—C2—C3—C4−175.3 (2)C8—C7—C10—C15139.5 (2)
N1—C2—C3—C45.1 (2)C15—C10—C11—C12−0.3 (3)
C2—C3—C4—C5−4.7 (2)C7—C10—C11—C12179.3 (2)
C3—C4—C5—N12.8 (2)C10—C11—C12—C13−0.1 (4)
C3—C4—C5—C6−118.0 (2)C11—C12—C13—C140.7 (4)
N1—C5—C6—O2−67.5 (2)C12—C13—C14—C15−1.0 (4)
C4—C5—C6—O250.0 (2)C11—C10—C15—C140.0 (3)
N1—C5—C6—C753.7 (2)C7—C10—C15—C14−179.6 (2)
C4—C5—C6—C7171.18 (18)C13—C14—C15—C100.6 (3)
O2—C6—C7—C10−63.7 (2)O1—C2—N1—C5176.9 (2)
C5—C6—C7—C10174.18 (17)C3—C2—N1—C5−3.5 (2)
O2—C6—C7—C863.7 (2)O1—C2—N1—C9−4.6 (3)
C5—C6—C7—C8−58.4 (2)C3—C2—N1—C9175.0 (2)
C10—C7—C8—C9−174.06 (18)C6—C5—N1—C2125.53 (19)
C6—C7—C8—C958.6 (2)C4—C5—N1—C20.4 (2)
C7—C8—C9—N1−52.9 (3)C6—C5—N1—C9−53.1 (3)
C6—C7—C10—C1185.3 (2)C4—C5—N1—C9−178.2 (2)
C8—C7—C10—C11−40.0 (3)C8—C9—N1—C2−126.4 (2)
C6—C7—C10—C15−95.1 (2)C8—C9—N1—C552.1 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2···O1i0.822.002.807 (2)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O1i0.822.002.807 (2)170

Symmetry code: (i) .

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10.  (7R,8R,8aS)-8-Hydr-oxy-7-phenyl-per-hydro-indolizin-3-one.

Authors:  Lubomír Svorc; Viktor Vrábel; Jozefína Zúžiová; Mária Bobošíková; Jozef Kožíšek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28
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