Literature DB >> 21583201

4-(2H-Tetra-zol-5-yl)pyridinium perchlorate.

Jing Dai1.   

Abstract

In the cation of the title compound, C(6)H(6)N(5) (+)·ClO(4) (-), the pyridinium and tetra-zole rings form a dihedral angle of 23.6 (1)°. In the crystal structure, weak inter-molecular N-H⋯O and N-H⋯N hydrogen bonds link cations and anions into chains extending along the b axis.

Entities:  

Year:  2009        PMID: 21583201      PMCID: PMC2969801          DOI: 10.1107/S1600536809018200

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of tetra­zole derivatives in coordination chemistry, see: Xiong et al. (2002 ▶); Wang et al. (2005 ▶). For related structures, see: Dai & Fu (2008 ▶); Wen (2008 ▶).

Experimental

Crystal data

C6H6N5ClO4 M = 247.61 Monoclinic, a = 5.2033 (10) Å b = 14.764 (3) Å c = 12.244 (2) Å β = 101.78 (3)° V = 920.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.43 mm−1 T = 298 K 0.30 × 0.25 × 0.20 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.872, T max = 1.000 (expected range = 0.801–0.919) 9546 measured reflections 2108 independent reflections 1849 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.093 S = 1.09 2108 reflections 146 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.37 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809018200/cv2545sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018200/cv2545Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6N5+·ClO4F(000) = 504
Mr = 247.61Dx = 1.786 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2108 reflections
a = 5.2033 (10) Åθ = 3.2–27.5°
b = 14.764 (3) ŵ = 0.43 mm1
c = 12.244 (2) ÅT = 298 K
β = 101.78 (3)°Block, colourless
V = 920.8 (3) Å30.30 × 0.25 × 0.20 mm
Z = 4
Rigaku Mercury2 diffractometer2108 independent reflections
Radiation source: fine-focus sealed tube1849 reflections with I > 2σ(I)
graphiteRint = 0.036
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.2°
CCD profile fitting scansh = −6→6
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −19→19
Tmin = 0.872, Tmax = 1.000l = −15→15
9546 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.093w = 1/[σ2(Fo2) + (0.0391P)2 + 0.4636P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
2108 reflectionsΔρmax = 0.29 e Å3
146 parametersΔρmin = −0.37 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.032 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.54774 (8)0.68556 (3)0.60933 (3)0.02861 (15)
O40.6154 (3)0.76134 (10)0.54624 (12)0.0425 (4)
O30.2704 (3)0.68626 (10)0.60633 (13)0.0433 (4)
O20.6150 (3)0.60331 (10)0.55912 (15)0.0524 (4)
N10.3679 (3)0.59831 (10)0.88383 (13)0.0307 (3)
N50.0708 (3)0.33991 (11)0.61681 (12)0.0317 (3)
H5A−0.01010.30290.56730.038*
N40.7318 (3)0.51759 (10)0.89177 (13)0.0325 (4)
C30.3301 (3)0.45759 (11)0.77061 (13)0.0247 (3)
C60.4761 (3)0.52315 (11)0.85006 (13)0.0246 (3)
N20.5614 (3)0.64262 (10)0.94760 (13)0.0327 (4)
C50.2877 (4)0.31159 (12)0.68590 (16)0.0337 (4)
H50.34710.25260.68100.040*
N30.7722 (3)0.59329 (10)0.95023 (13)0.0325 (4)
H3A0.92460.60900.98710.039*
O10.6915 (3)0.69193 (12)0.72169 (12)0.0516 (4)
C20.0996 (3)0.48426 (12)0.69840 (15)0.0298 (4)
H20.03270.54230.70260.036*
C40.4234 (4)0.37000 (12)0.76447 (15)0.0308 (4)
H40.57560.35110.81290.037*
C1−0.0268 (4)0.42336 (13)0.62097 (15)0.0334 (4)
H1−0.17990.44010.57160.040*
U11U22U33U12U13U23
Cl10.0264 (2)0.0283 (2)0.0283 (2)−0.00122 (15)−0.00104 (16)0.00377 (16)
O40.0439 (8)0.0389 (8)0.0435 (8)−0.0015 (6)0.0060 (6)0.0151 (6)
O30.0268 (7)0.0536 (9)0.0482 (8)−0.0018 (6)0.0044 (6)−0.0002 (7)
O20.0510 (9)0.0366 (8)0.0687 (11)0.0080 (7)0.0098 (8)−0.0074 (7)
N10.0302 (8)0.0249 (8)0.0349 (8)−0.0011 (6)0.0013 (6)−0.0052 (6)
N50.0349 (8)0.0290 (8)0.0287 (8)−0.0066 (6)0.0006 (6)−0.0077 (6)
N40.0284 (8)0.0285 (8)0.0371 (8)0.0002 (6)−0.0016 (6)−0.0049 (6)
C30.0260 (8)0.0227 (8)0.0247 (8)−0.0023 (6)0.0036 (6)−0.0002 (6)
C60.0262 (8)0.0215 (8)0.0244 (8)0.0000 (6)0.0012 (6)0.0007 (6)
N20.0346 (8)0.0266 (8)0.0344 (8)−0.0041 (6)0.0014 (6)−0.0049 (6)
C50.0423 (11)0.0224 (9)0.0348 (10)0.0007 (7)0.0037 (8)−0.0026 (7)
N30.0289 (8)0.0293 (8)0.0348 (8)−0.0038 (6)−0.0038 (6)−0.0047 (6)
O10.0471 (9)0.0699 (11)0.0306 (8)−0.0147 (7)−0.0092 (6)0.0103 (7)
C20.0291 (9)0.0249 (9)0.0328 (9)0.0015 (7)0.0003 (7)−0.0014 (7)
C40.0331 (9)0.0247 (9)0.0304 (9)0.0024 (7)−0.0030 (7)−0.0009 (7)
C10.0294 (9)0.0345 (10)0.0325 (9)−0.0008 (7)−0.0027 (7)−0.0011 (8)
Cl1—O11.4285 (15)C3—C41.389 (2)
Cl1—O21.4363 (15)C3—C21.394 (2)
Cl1—O31.4363 (15)C3—C61.469 (2)
Cl1—O41.4433 (14)N2—N31.312 (2)
N1—N21.315 (2)C5—C41.375 (2)
N1—C61.347 (2)C5—H50.9300
N5—C51.332 (2)N3—H3A0.8600
N5—C11.338 (2)C2—C11.373 (2)
N5—H5A0.8600C2—H20.9300
N4—N31.321 (2)C4—H40.9300
N4—C61.327 (2)C1—H10.9300
O1—Cl1—O2110.02 (11)N3—N2—N1105.86 (15)
O1—Cl1—O3110.48 (10)N5—C5—C4119.66 (17)
O2—Cl1—O3109.06 (9)N5—C5—H5120.2
O1—Cl1—O4109.12 (9)C4—C5—H5120.2
O2—Cl1—O4108.60 (10)N2—N3—N4114.64 (14)
O3—Cl1—O4109.53 (9)N2—N3—H3A122.7
N2—N1—C6105.96 (15)N4—N3—H3A122.7
C5—N5—C1122.96 (15)C1—C2—C3118.82 (16)
C5—N5—H5A118.5C1—C2—H2120.6
C1—N5—H5A118.5C3—C2—H2120.6
N3—N4—C6101.09 (14)C5—C4—C3119.14 (16)
C4—C3—C2119.59 (15)C5—C4—H4120.4
C4—C3—C6120.69 (15)C3—C4—H4120.4
C2—C3—C6119.70 (15)N5—C1—C2119.82 (16)
N4—C6—N1112.45 (15)N5—C1—H1120.1
N4—C6—C3123.79 (15)C2—C1—H1120.1
N1—C6—C3123.66 (15)
D—H···AD—HH···AD···AD—H···A
N5—H5A···O3i0.862.282.964 (2)136
N5—H5A···N2ii0.862.383.059 (2)136
N3—H3A···O4iii0.862.212.884 (2)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H5A⋯O3i0.862.282.964 (2)136
N5—H5A⋯N2ii0.862.383.059 (2)136
N3—H3A⋯O4iii0.862.212.884 (2)135

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  Novel, acentric metal-organic coordination polymers from hydrothermal reactions involving in situ ligand synthesis.

Authors:  Ren-Gen Xiong; Xiang Xue; Hong Zhao; Xiao-Zeng You; Brendan F Abrahams; Ziling Xue
Journal:  Angew Chem Int Ed Engl       Date:  2002-10-18       Impact factor: 15.336

2.  A short history of SHELX.

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3.  Syntheses, crystal structures, and luminescent properties of three novel zinc coordination polymers with tetrazolyl ligands.

Authors:  Xi-Sen Wang; Yun-Zhi Tang; Xue-Feng Huang; Zhi-Rong Qu; Chi-Ming Che; Philip Wai Hong Chan; Ren-Gen Xiong
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4.  2-{4-[5-(3-Pyrid-yl)-2H-tetra-zol-2-ylmeth-yl]phen-yl}benzonitrile.

Authors:  Wei Dai; Da-Wei Fu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-09

5.  Diaqua-[5-(2-pyrid-yl)tetra-zolato-κN,N]manganese(II).

Authors:  Xiao-Chun Wen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03
  5 in total

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