Literature DB >> 21583196

4-[3-(4-Fluoro-phen-yl)quinoxalin-2-yl]-N-isopropyl-pyridin-2-amine.

Pierre Koch, Dieter Schollmeyer, Stefan Laufer.   

Abstract

In the crystal structure of the title compound, C(22)H(19)FN(4), the quinoxaline system makes dihedral angles of 32.07 (13) and 69.64 (13)° with the 4-fluoro-phenyl and pyridine rings, respectively. The 4-fluoro-phenyl ring makes a dihedral angle of 71.77 (16)° with the pyridine ring. The crystal structure is stabilized by inter-molecular N-H⋯N hydrogen bonding.

Entities:  

Year:  2009        PMID: 21583196      PMCID: PMC2969533          DOI: 10.1107/S1600536809018285

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For chinoxaline derivatives and their biological activity, see: He et al. (2003 ▶); Kim et al. (2004 ▶).

Experimental

Crystal data

C22H19FN4 M = 358.41 Monoclinic, a = 17.230 (9) Å b = 5.386 (3) Å c = 19.123 (10) Å β = 96.114 (13)° V = 1764.4 (16) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 0.4 × 0.06 × 0.03 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: none 20392 measured reflections 4217 independent reflections 1201 reflections with I > 2σ(I) R int = 0.236

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.123 S = 0.74 4217 reflections 247 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809018285/bt2957sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018285/bt2957Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H19FN4F(000) = 752
Mr = 358.41Dx = 1.349 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 934 reflections
a = 17.230 (9) Åθ = 2.2–19.5°
b = 5.386 (3) ŵ = 0.09 mm1
c = 19.123 (10) ÅT = 173 K
β = 96.114 (13)°Needle, colourless
V = 1764.4 (16) Å30.4 × 0.06 × 0.03 mm
Z = 4
Bruker SMART CCD diffractometer1201 reflections with I > 2σ(I)
Radiation source: sealed TubeRint = 0.236
graphiteθmax = 28.0°, θmin = 1.5°
CCD scansh = −22→21
20392 measured reflectionsk = −7→6
4217 independent reflectionsl = −25→25
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.123w = 1/[σ2(Fo2) + (0.03P)2] where P = (Fo2 + 2Fc2)/3
S = 0.74(Δ/σ)max < 0.001
4217 reflectionsΔρmax = 0.23 e Å3
247 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0111 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.32320 (13)−0.2743 (4)0.12436 (11)0.0534 (7)
N10.64239 (16)0.7424 (5)0.21100 (13)0.0280 (7)
C20.5913 (2)0.5582 (6)0.20994 (17)0.0247 (9)
C30.5637 (2)0.4311 (6)0.14642 (17)0.0247 (9)
N40.59317 (17)0.4791 (5)0.08672 (14)0.0286 (8)
C50.6482 (2)0.6633 (6)0.08760 (18)0.0261 (9)
C60.6806 (2)0.7247 (7)0.02532 (18)0.0354 (9)
H60.66760.6298−0.01620.043*
C70.7308 (2)0.9216 (7)0.02466 (19)0.0391 (10)
H70.75230.9632−0.01760.047*
C80.7511 (2)1.0634 (7)0.08587 (19)0.0360 (10)
H80.78531.20100.08430.043*
C90.7220 (2)1.0048 (6)0.14717 (18)0.0320 (10)
H90.73621.09940.18850.038*
C100.6703 (2)0.8013 (6)0.14864 (18)0.0288 (9)
C110.5688 (2)0.4924 (6)0.28109 (17)0.0266 (9)
C120.5957 (2)0.2739 (6)0.31406 (17)0.0283 (9)
H120.62290.15310.28990.034*
C130.5814 (2)0.2386 (6)0.38249 (17)0.0299 (9)
H130.60230.09340.40560.036*
N140.54053 (16)0.3921 (5)0.41920 (13)0.0260 (7)
C150.50848 (19)0.5941 (6)0.38430 (17)0.0259 (9)
C160.5247 (2)0.6521 (6)0.31639 (17)0.0271 (9)
H160.50540.80160.29460.033*
N170.46189 (16)0.7389 (5)0.42120 (13)0.0289 (7)
H170.45660.66230.46850.035*
C180.4038 (2)0.9131 (6)0.38765 (17)0.0309 (9)
H180.43041.02660.35640.037*
C190.3386 (2)0.7750 (7)0.34280 (18)0.0419 (10)
H19A0.31280.65980.37260.063*
H19B0.36090.68180.30570.063*
H19C0.30040.89490.32140.063*
C200.3708 (2)1.0676 (6)0.44350 (17)0.0374 (10)
H20A0.34270.95960.47350.056*
H20B0.33471.19170.42100.056*
H20C0.41341.15160.47220.056*
C210.4997 (2)0.2437 (6)0.14209 (16)0.0255 (8)
C220.4995 (2)0.0513 (6)0.09329 (17)0.0301 (9)
H220.54020.04180.06360.036*
C230.4409 (2)−0.1263 (6)0.08723 (18)0.0356 (10)
H230.4414−0.25980.05480.043*
C240.3825 (2)−0.1020 (7)0.1296 (2)0.0360 (10)
C250.3785 (2)0.0856 (7)0.17772 (18)0.0347 (10)
H250.33650.09520.20600.042*
C260.4380 (2)0.2604 (7)0.18368 (17)0.0321 (9)
H260.43670.39280.21640.039*
U11U22U33U12U13U23
F10.0456 (16)0.0392 (14)0.0736 (16)−0.0154 (12)−0.0022 (12)0.0043 (13)
N10.0310 (19)0.0222 (16)0.0312 (17)0.0018 (16)0.0047 (14)0.0014 (15)
C20.025 (2)0.020 (2)0.030 (2)0.0058 (17)0.0039 (18)0.0025 (18)
C30.027 (2)0.022 (2)0.026 (2)0.0052 (17)0.0060 (18)−0.0013 (18)
N40.0292 (19)0.0244 (18)0.0325 (18)0.0068 (15)0.0053 (15)0.0005 (14)
C50.028 (2)0.024 (2)0.027 (2)0.0018 (17)0.0059 (18)0.0003 (17)
C60.037 (3)0.033 (2)0.037 (2)0.005 (2)0.0078 (19)−0.002 (2)
C70.038 (3)0.040 (3)0.040 (3)0.007 (2)0.012 (2)0.011 (2)
C80.031 (3)0.030 (2)0.047 (2)0.0018 (18)0.005 (2)0.004 (2)
C90.029 (2)0.029 (2)0.038 (2)0.0020 (18)0.0052 (19)0.0032 (18)
C100.028 (2)0.027 (2)0.032 (2)0.0022 (18)0.0067 (18)0.0028 (18)
C110.026 (2)0.025 (2)0.029 (2)−0.0075 (17)0.0027 (18)−0.0067 (18)
C120.033 (2)0.021 (2)0.030 (2)0.0001 (18)0.0025 (18)−0.0038 (18)
C130.032 (2)0.020 (2)0.039 (2)0.0047 (19)0.0096 (19)0.0011 (19)
N140.0308 (19)0.0169 (16)0.0307 (17)−0.0021 (15)0.0051 (15)−0.0004 (14)
C150.026 (2)0.022 (2)0.030 (2)−0.0021 (18)0.0031 (18)−0.0024 (18)
C160.035 (2)0.018 (2)0.028 (2)−0.0004 (16)0.0027 (19)−0.0013 (16)
N170.0362 (19)0.0258 (17)0.0254 (16)0.0099 (15)0.0060 (14)0.0040 (15)
C180.032 (2)0.025 (2)0.035 (2)−0.0007 (19)0.0040 (19)−0.0001 (18)
C190.037 (3)0.046 (3)0.042 (2)0.001 (2)0.001 (2)−0.002 (2)
C200.041 (3)0.029 (2)0.044 (2)0.0097 (19)0.014 (2)0.0001 (19)
C210.029 (2)0.0200 (19)0.0268 (19)0.0030 (19)0.0021 (17)0.0039 (18)
C220.033 (2)0.024 (2)0.033 (2)0.0069 (18)0.0013 (19)0.0042 (19)
C230.041 (3)0.021 (2)0.043 (2)0.0047 (19)−0.006 (2)−0.0029 (18)
C240.035 (3)0.026 (2)0.045 (2)−0.011 (2)−0.003 (2)0.009 (2)
C250.031 (3)0.037 (2)0.035 (2)0.003 (2)0.0031 (19)0.006 (2)
C260.031 (2)0.033 (2)0.032 (2)0.001 (2)0.0004 (18)−0.0017 (19)
F1—C241.376 (4)C15—N171.368 (4)
N1—C21.325 (4)C15—C161.393 (4)
N1—C101.370 (4)C16—H160.9500
C2—C31.431 (4)N17—C181.469 (4)
C2—C111.497 (4)N17—H171.0071
C3—N41.324 (4)C18—C201.512 (4)
C3—C211.491 (4)C18—C191.532 (4)
N4—C51.371 (4)C18—H181.0000
C5—C101.402 (4)C19—H19A0.9800
C5—C61.407 (4)C19—H19B0.9800
C6—C71.370 (5)C19—H19C0.9800
C6—H60.9500C20—H20A0.9800
C7—C81.410 (4)C20—H20B0.9800
C7—H70.9500C20—H20C0.9800
C8—C91.360 (4)C21—C221.394 (4)
C8—H80.9500C21—C261.397 (4)
C9—C101.414 (4)C22—C231.386 (5)
C9—H90.9500C22—H220.9500
C11—C161.372 (4)C23—C241.363 (4)
C11—C121.391 (4)C23—H230.9500
C12—C131.370 (4)C24—C251.373 (4)
C12—H120.9500C25—C261.387 (4)
C13—N141.334 (4)C25—H250.9500
C13—H130.9500C26—H260.9500
N14—C151.362 (4)
C2—N1—C10117.0 (3)C15—C16—H16120.2
N1—C2—C3122.1 (3)C15—N17—C18123.3 (3)
N1—C2—C11113.5 (3)C15—N17—H17110.1
C3—C2—C11124.3 (3)C18—N17—H17122.1
N4—C3—C2121.0 (3)N17—C18—C20109.5 (3)
N4—C3—C21115.7 (3)N17—C18—C19111.1 (3)
C2—C3—C21123.2 (3)C20—C18—C19110.7 (3)
C3—N4—C5117.3 (3)N17—C18—H18108.5
N4—C5—C10121.4 (3)C20—C18—H18108.5
N4—C5—C6119.7 (3)C19—C18—H18108.5
C10—C5—C6118.8 (3)C18—C19—H19A109.5
C7—C6—C5119.9 (3)C18—C19—H19B109.5
C7—C6—H6120.1H19A—C19—H19B109.5
C5—C6—H6120.1C18—C19—H19C109.5
C6—C7—C8120.8 (3)H19A—C19—H19C109.5
C6—C7—H7119.6H19B—C19—H19C109.5
C8—C7—H7119.6C18—C20—H20A109.5
C9—C8—C7120.6 (4)C18—C20—H20B109.5
C9—C8—H8119.7H20A—C20—H20B109.5
C7—C8—H8119.7C18—C20—H20C109.5
C8—C9—C10119.2 (4)H20A—C20—H20C109.5
C8—C9—H9120.4H20B—C20—H20C109.5
C10—C9—H9120.4C22—C21—C26118.8 (3)
N1—C10—C5120.8 (3)C22—C21—C3119.3 (3)
N1—C10—C9118.5 (3)C26—C21—C3121.9 (3)
C5—C10—C9120.7 (3)C23—C22—C21121.2 (3)
C16—C11—C12118.8 (3)C23—C22—H22119.4
C16—C11—C2120.6 (3)C21—C22—H22119.4
C12—C11—C2120.4 (3)C24—C23—C22117.4 (3)
C13—C12—C11117.7 (3)C24—C23—H23121.3
C13—C12—H12121.1C22—C23—H23121.3
C11—C12—H12121.1C23—C24—C25124.2 (4)
N14—C13—C12125.1 (3)C23—C24—F1118.8 (4)
N14—C13—H13117.4C25—C24—F1117.0 (4)
C12—C13—H13117.4C24—C25—C26117.7 (4)
C13—N14—C15116.5 (3)C24—C25—H25121.1
N14—C15—N17115.6 (3)C26—C25—H25121.1
N14—C15—C16121.6 (3)C25—C26—C21120.6 (4)
N17—C15—C16122.7 (3)C25—C26—H26119.7
C11—C16—C15119.7 (3)C21—C26—H26119.7
C11—C16—H16120.2
C10—N1—C2—C3−2.4 (5)C2—C11—C12—C13171.9 (3)
C10—N1—C2—C11175.3 (3)C11—C12—C13—N143.4 (5)
N1—C2—C3—N45.8 (5)C12—C13—N14—C152.5 (5)
C11—C2—C3—N4−171.7 (3)C13—N14—C15—N17175.2 (3)
N1—C2—C3—C21−172.7 (3)C13—N14—C15—C16−6.9 (5)
C11—C2—C3—C219.9 (5)C12—C11—C16—C150.6 (5)
C2—C3—N4—C5−3.1 (5)C2—C11—C16—C15−176.1 (3)
C21—C3—N4—C5175.4 (3)N14—C15—C16—C115.5 (5)
C3—N4—C5—C10−2.2 (5)N17—C15—C16—C11−176.8 (3)
C3—N4—C5—C6−179.0 (3)N14—C15—N17—C18−160.1 (3)
N4—C5—C6—C7174.8 (3)C16—C15—N17—C1822.0 (5)
C10—C5—C6—C7−2.1 (5)C15—N17—C18—C20−172.2 (3)
C5—C6—C7—C80.4 (5)C15—N17—C18—C1965.2 (4)
C6—C7—C8—C91.0 (6)N4—C3—C21—C2231.4 (5)
C7—C8—C9—C10−0.7 (5)C2—C3—C21—C22−150.1 (3)
C2—N1—C10—C5−2.9 (5)N4—C3—C21—C26−146.0 (3)
C2—N1—C10—C9177.0 (3)C2—C3—C21—C2632.5 (5)
N4—C5—C10—N15.5 (5)C26—C21—C22—C23−2.2 (5)
C6—C5—C10—N1−177.7 (3)C3—C21—C22—C23−179.7 (3)
N4—C5—C10—C9−174.4 (3)C21—C22—C23—C241.6 (5)
C6—C5—C10—C92.4 (5)C22—C23—C24—C25−0.3 (6)
C8—C9—C10—N1179.1 (3)C22—C23—C24—F1179.5 (3)
C8—C9—C10—C5−1.0 (5)C23—C24—C25—C26−0.3 (5)
N1—C2—C11—C1669.2 (4)F1—C24—C25—C26179.9 (3)
C3—C2—C11—C16−113.1 (4)C24—C25—C26—C21−0.3 (5)
N1—C2—C11—C12−107.4 (4)C22—C21—C26—C251.5 (5)
C3—C2—C11—C1270.3 (5)C3—C21—C26—C25178.9 (3)
C16—C11—C12—C13−4.8 (5)
D—H···AD—HH···AD···AD—H···A
N17—H17···N14i1.012.163.137 (4)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N17—H17⋯N14i1.012.163.137 (4)162

Symmetry code: (i) .

  4 in total

1.  Synthesis and biological activity of new quinoxaline antibiotics of echinomycin analogues.

Authors:  Yun Bong Kim; Yong Hae Kim; Ju Youn Park; Soo Kie Kim
Journal:  Bioorg Med Chem Lett       Date:  2004-01-19       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Potent quinoxaline-based inhibitors of PDGF receptor tyrosine kinase activity. Part 2: the synthesis and biological activities of RPR127963 an orally bioavailable inhibitor.

Authors:  Wei He; Michael R Myers; Barbara Hanney; Alfred P Spada; Glenda Bilder; Helen Galzcinski; Dilip Amin; Saul Needle; Ken Page; Zaid Jayyosi; Mark H Perrone
Journal:  Bioorg Med Chem Lett       Date:  2003-09-15       Impact factor: 2.823

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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