Literature DB >> 21583194

5-Dimethyl-amino-N,N-dimethyl-2-nitro-benzamide.

Hoong-Kun Fun, Samuel Robinson Jebas, B Chandrakantha, Vijaya Padmar, Arun M Isloor.   

Abstract

In the title compound, C(11)H(15)N(3)O(3), one of the methyl groups attached to the benzamide unit is slightly twisted with a C-N-C-C torsion angle of 4.04 (13)°. The crystal packing is stabilized by weak intermolecular C-H⋯O hydrogen bonds together with a weak C-H⋯π inter-action.

Entities:  

Year:  2009        PMID: 21583194      PMCID: PMC2969681          DOI: 10.1107/S1600536809018017

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For nitro­aniline mustards, see: Brian et al. (1992 ▶); Rauth, (1984 ▶). For N-[(N,N-dimethyl­amino)eth­yl]carboxamide derivatives, see: Alston et al. (1983 ▶); Denny & Wilson (1986 ▶); Palmer et al. (1990 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C11H15N3O3 M = 237.26 Monoclinic, a = 7.8581 (2) Å b = 7.2921 (2) Å c = 10.5183 (3) Å β = 104.663 (1)° V = 583.09 (3) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.52 × 0.45 × 0.33 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.949, T max = 0.965 16075 measured reflections 3233 independent reflections 3002 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.103 S = 1.08 3233 reflections 158 parameters 1 restraint H-atom parameters constrained Δρmax = 0.64 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809018017/dn2453sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018017/dn2453Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H15N3O3F(000) = 252
Mr = 237.26Dx = 1.351 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 9204 reflections
a = 7.8581 (2) Åθ = 2.7–40.5°
b = 7.2921 (2) ŵ = 0.10 mm1
c = 10.5183 (3) ÅT = 100 K
β = 104.663 (1)°Block, yellow
V = 583.09 (3) Å30.52 × 0.45 × 0.33 mm
Z = 2
Bruker SMART APEXII CCD area-detector diffractometer3233 independent reflections
Radiation source: fine-focus sealed tube3002 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 37.5°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −13→13
Tmin = 0.949, Tmax = 0.965k = −12→12
16075 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0716P)2 + 0.0071P] where P = (Fo2 + 2Fc2)/3
3233 reflections(Δ/σ)max < 0.001
158 parametersΔρmax = 0.64 e Å3
1 restraintΔρmin = −0.19 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.42663 (10)1.04274 (10)0.31204 (7)0.01969 (13)
O20.81992 (10)0.62755 (17)0.20077 (10)0.0334 (2)
O30.71314 (10)0.76718 (13)0.34531 (8)0.02322 (15)
N10.32548 (10)0.78907 (13)0.39646 (8)0.01811 (14)
N20.03825 (10)0.70383 (12)−0.13123 (8)0.01594 (13)
N30.69532 (10)0.69824 (13)0.23538 (9)0.01899 (15)
C10.21826 (10)0.78067 (12)0.08485 (8)0.01443 (13)
H1A0.12100.83090.10720.017*
C20.19805 (10)0.70835 (12)−0.04364 (9)0.01396 (13)
C30.35014 (11)0.63797 (13)−0.07614 (9)0.01687 (15)
H3A0.34270.5950−0.16060.020*
C40.50889 (12)0.63311 (14)0.01717 (10)0.01789 (16)
H4A0.60700.5837−0.00450.021*
C50.52463 (11)0.70133 (13)0.14373 (9)0.01538 (14)
C60.37880 (10)0.77846 (12)0.17780 (8)0.01392 (13)
C70.38381 (11)0.87931 (13)0.30423 (8)0.01530 (14)
C80.30516 (14)0.88622 (18)0.51258 (10)0.02438 (19)
H8A0.34091.01160.50880.037*
H8B0.37700.82900.58990.037*
H8C0.18420.88220.51560.037*
C90.26858 (13)0.59813 (16)0.38621 (11)0.02241 (18)
H9A0.31490.53680.32150.034*
H9B0.14240.59300.36060.034*
H9C0.31090.53890.46980.034*
C10−0.11334 (12)0.79019 (15)−0.10016 (10)0.02084 (17)
H10A−0.12200.7503−0.01510.031*
H10B−0.21830.7562−0.16500.031*
H10C−0.09970.9210−0.09990.031*
C110.02302 (13)0.65472 (17)−0.26808 (10)0.02261 (18)
H11A0.06640.5324−0.27240.034*
H11B0.09080.7388−0.30560.034*
H11C−0.09820.6607−0.31630.034*
U11U22U33U12U13U23
O10.0221 (3)0.0166 (3)0.0198 (3)−0.0026 (2)0.0044 (2)−0.0016 (2)
O20.0152 (3)0.0482 (6)0.0356 (4)0.0109 (3)0.0039 (3)−0.0048 (4)
O30.0180 (3)0.0286 (4)0.0212 (3)−0.0001 (3)0.0016 (2)0.0009 (3)
N10.0175 (3)0.0211 (4)0.0163 (3)−0.0025 (3)0.0053 (2)0.0010 (3)
N20.0142 (3)0.0169 (3)0.0162 (3)0.0002 (2)0.0029 (2)−0.0020 (3)
N30.0132 (3)0.0199 (3)0.0232 (3)0.0010 (3)0.0033 (2)0.0028 (3)
C10.0119 (3)0.0156 (3)0.0163 (3)0.0001 (2)0.0045 (2)−0.0015 (3)
C20.0134 (3)0.0125 (3)0.0162 (3)−0.0006 (2)0.0042 (2)−0.0005 (3)
C30.0154 (3)0.0165 (3)0.0198 (4)0.0002 (3)0.0065 (3)−0.0033 (3)
C40.0142 (3)0.0175 (4)0.0230 (4)0.0013 (3)0.0065 (3)−0.0022 (3)
C50.0117 (3)0.0151 (3)0.0191 (3)0.0008 (3)0.0036 (2)0.0010 (3)
C60.0128 (3)0.0134 (3)0.0159 (3)−0.0007 (2)0.0043 (2)0.0011 (3)
C70.0131 (3)0.0175 (3)0.0150 (3)−0.0004 (3)0.0029 (2)0.0003 (3)
C80.0253 (4)0.0322 (5)0.0174 (4)0.0020 (4)0.0086 (3)0.0002 (4)
C90.0205 (4)0.0228 (4)0.0232 (4)−0.0045 (3)0.0041 (3)0.0059 (3)
C100.0145 (3)0.0253 (4)0.0214 (4)0.0033 (3)0.0020 (3)−0.0045 (4)
C110.0208 (4)0.0303 (5)0.0164 (3)−0.0019 (3)0.0040 (3)−0.0045 (3)
O1—C71.2354 (12)C4—C51.3969 (13)
O2—N31.2400 (12)C4—H4A0.9300
O3—N31.2358 (12)C5—C61.4021 (11)
N1—C71.3450 (12)C6—C71.5115 (13)
N1—C81.4553 (13)C8—H8A0.9600
N1—C91.4580 (14)C8—H8B0.9600
N2—C21.3569 (11)C8—H8C0.9600
N2—C101.4558 (12)C9—H9A0.9600
N2—C111.4585 (12)C9—H9B0.9600
N3—C51.4403 (12)C9—H9C0.9600
C1—C61.3868 (11)C10—H10A0.9600
C1—C21.4216 (12)C10—H10B0.9600
C1—H1A0.9300C10—H10C0.9600
C2—C31.4197 (11)C11—H11A0.9600
C3—C41.3787 (12)C11—H11B0.9600
C3—H3A0.9300C11—H11C0.9600
C7—N1—C8119.80 (9)O1—C7—N1124.11 (9)
C7—N1—C9124.61 (8)O1—C7—C6118.29 (8)
C8—N1—C9115.48 (8)N1—C7—C6117.31 (8)
C2—N2—C10120.41 (7)N1—C8—H8A109.5
C2—N2—C11120.45 (7)N1—C8—H8B109.5
C10—N2—C11117.41 (8)H8A—C8—H8B109.5
O3—N3—O2122.21 (9)N1—C8—H8C109.5
O3—N3—C5119.06 (8)H8A—C8—H8C109.5
O2—N3—C5118.74 (9)H8B—C8—H8C109.5
C6—C1—C2121.92 (7)N1—C9—H9A109.5
C6—C1—H1A119.0N1—C9—H9B109.5
C2—C1—H1A119.0H9A—C9—H9B109.5
N2—C2—C3121.23 (8)N1—C9—H9C109.5
N2—C2—C1121.07 (7)H9A—C9—H9C109.5
C3—C2—C1117.69 (7)H9B—C9—H9C109.5
C4—C3—C2120.20 (8)N2—C10—H10A109.5
C4—C3—H3A119.9N2—C10—H10B109.5
C2—C3—H3A119.9H10A—C10—H10B109.5
C3—C4—C5121.00 (8)N2—C10—H10C109.5
C3—C4—H4A119.5H10A—C10—H10C109.5
C5—C4—H4A119.5H10B—C10—H10C109.5
C4—C5—C6120.36 (8)N2—C11—H11A109.5
C4—C5—N3118.37 (7)N2—C11—H11B109.5
C6—C5—N3121.20 (8)H11A—C11—H11B109.5
C1—C6—C5118.75 (8)N2—C11—H11C109.5
C1—C6—C7115.54 (7)H11A—C11—H11C109.5
C5—C6—C7125.39 (7)H11B—C11—H11C109.5
C10—N2—C2—C3−174.89 (9)C2—C1—C6—C5−0.44 (13)
C11—N2—C2—C3−10.25 (14)C2—C1—C6—C7173.36 (8)
C10—N2—C2—C16.32 (14)C4—C5—C6—C11.86 (13)
C11—N2—C2—C1170.96 (9)N3—C5—C6—C1178.85 (8)
C6—C1—C2—N2176.85 (9)C4—C5—C6—C7−171.28 (9)
C6—C1—C2—C3−1.98 (13)N3—C5—C6—C75.71 (14)
N2—C2—C3—C4−175.78 (9)C8—N1—C7—O11.74 (14)
C1—C2—C3—C43.05 (13)C9—N1—C7—O1177.67 (9)
C2—C3—C4—C5−1.73 (15)C8—N1—C7—C6−171.90 (8)
C3—C4—C5—C6−0.79 (15)C9—N1—C7—C64.04 (13)
C3—C4—C5—N3−177.86 (9)C1—C6—C7—O1−91.10 (10)
O3—N3—C5—C4176.11 (9)C5—C6—C7—O182.24 (12)
O2—N3—C5—C4−3.35 (14)C1—C6—C7—N182.91 (10)
O3—N3—C5—C6−0.94 (14)C5—C6—C7—N1−103.75 (10)
O2—N3—C5—C6179.61 (10)
D—H···AD—HH···AD···AD—H···A
C8—H8A···O3i0.962.523.1751 (16)126
C10—H10A···O2ii0.962.593.5413 (14)173
C10—H10B···O1iii0.962.493.3920 (13)156
C4—H4A···Cg1iv0.932.813.3991 (11)122
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8A⋯O3i0.962.523.1751 (16)126
C10—H10A⋯O2ii0.962.593.5413 (14)173
C10—H10B⋯O1iii0.962.493.3920 (13)156
C4—H4ACg1iv0.932.813.3991 (11)122

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg1 is the centroid of the C1–C6 ring.

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Considerations for the design of nitrophenyl mustards as agents with selective toxicity for hypoxic tumor cells.

Authors:  W A Denny; W R Wilson
Journal:  J Med Chem       Date:  1986-06       Impact factor: 7.446

3.  Pharmacology and toxicology of sensitizers: mechanism studies.

Authors:  A M Rauth
Journal:  Int J Radiat Oncol Biol Phys       Date:  1984-08       Impact factor: 7.038

4.  Hypoxia-selective antitumor agents. 3. Relationships between structure and cytotoxicity against cultured tumor cells for substituted N,N-bis(2-chloroethyl)anilines.

Authors:  B D Palmer; W R Wilson; S M Pullen; W A Denny
Journal:  J Med Chem       Date:  1990-01       Impact factor: 7.446

5.  Hypoxia-selective antitumor agents. 5. Synthesis of water-soluble nitroaniline mustards with selective cytotoxicity for hypoxic mammalian cells.

Authors:  B D Palmer; W R Wilson; S Cliffe; W A Denny
Journal:  J Med Chem       Date:  1992-08-21       Impact factor: 7.446

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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