Literature DB >> 21583175

2-(2H-Tetra-zol-5-yl)pyridinium nitrate.

Li-Jing Cui1, Miao-Jia Yu.   

Abstract

In the cation of the title compound, C(6)H(6)N(5) (+)·NO(3) (-), the dihedral angle between the pyridinium and tetra-zole rings is 8.2 (2)°. The constituent ions of the compound are linked via N-H⋯O hydrogen bonds, forming helical chains running along the b axis. C-H⋯N and C-H⋯O hydrogen bonds are also observed.

Entities:  

Year:  2009        PMID: 21583175      PMCID: PMC2969575          DOI: 10.1107/S1600536809018078

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of tetra­zole derivatives in coordination chemistry, see: Xiong et al. (2002 ▶); Fu et al. (2008 ▶); Wang et al. (2005 ▶). For the crystal structures of related compounds, see: Dai & Fu (2008 ▶); Wen (2008 ▶).

Experimental

Crystal data

C6H6N5NO3 M = 210.17 Monoclinic, a = 20.400 (4) Å b = 4.8981 (10) Å c = 19.135 (4) Å β = 114.77 (3)° V = 1736.1 (7) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 298 K 0.20 × 0.15 × 0.15 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear, Rigaku, 2005 ▶) T min = 0.976, T max = 0.980 8427 measured reflections 1999 independent reflections 1033 reflections with I > 2σ(I) R int = 0.123

Refinement

R[F 2 > 2σ(F 2)] = 0.081 wR(F 2) = 0.209 S = 1.04 1999 reflections 136 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.36 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809018078/ci2780sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018078/ci2780Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6N5+·NO3F(000) = 864
Mr = 210.17Dx = 1.608 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1999 reflections
a = 20.400 (4) Åθ = 3.8–27.5°
b = 4.8981 (10) ŵ = 0.13 mm1
c = 19.135 (4) ÅT = 298 K
β = 114.77 (3)°Block, colourless
V = 1736.1 (7) Å30.20 × 0.15 × 0.15 mm
Z = 8
Rigaku Mercury2 diffractometer1999 independent reflections
Radiation source: fine-focus sealed tube1033 reflections with I > 2σ(I)
graphiteRint = 0.123
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.8°
ω scansh = −26→26
Absorption correction: multi-scan (CrystalClear, Rigaku, 2005)k = −6→6
Tmin = 0.976, Tmax = 0.980l = −24→24
8427 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.081Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.209H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0838P)2] where P = (Fo2 + 2Fc2)/3
1999 reflections(Δ/σ)max = 0.001
136 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.11658 (15)0.9420 (6)0.51774 (16)0.0383 (7)
H10.12391.00550.56230.046*
C60.21176 (18)0.6182 (7)0.58420 (19)0.0362 (8)
N20.24979 (17)0.3908 (6)0.58539 (17)0.0485 (8)
C10.15732 (18)0.7297 (7)0.51387 (19)0.0364 (8)
N50.23230 (16)0.7307 (6)0.65302 (17)0.0447 (8)
C30.0917 (2)0.7442 (8)0.3768 (2)0.0506 (10)
H30.08310.67710.32830.061*
N40.28398 (16)0.5624 (6)0.69580 (17)0.0463 (8)
H4A0.30820.58460.74450.056*
N30.29538 (17)0.3572 (7)0.65769 (18)0.0518 (9)
C40.0518 (2)0.9615 (9)0.3841 (2)0.0520 (11)
H40.01611.04110.34080.062*
C20.14442 (19)0.6270 (8)0.4418 (2)0.0436 (9)
H20.17110.47980.43710.052*
C50.0657 (2)1.0571 (8)0.4558 (2)0.0446 (9)
H50.03951.20390.46150.053*
N60.41263 (16)0.8821 (6)0.85439 (18)0.0434 (8)
O30.37035 (14)0.6773 (5)0.84530 (13)0.0533 (8)
O20.44457 (14)0.9758 (6)0.91958 (15)0.0570 (8)
O10.41958 (16)0.9759 (6)0.79835 (16)0.0672 (9)
U11U22U33U12U13U23
N10.0387 (17)0.0438 (18)0.0341 (16)−0.0043 (14)0.0169 (14)−0.0018 (14)
C60.0362 (19)0.037 (2)0.038 (2)−0.0036 (17)0.0179 (16)−0.0003 (16)
N20.0487 (19)0.054 (2)0.0364 (18)0.0079 (16)0.0115 (15)−0.0008 (15)
C10.0372 (19)0.039 (2)0.036 (2)−0.0052 (16)0.0181 (17)−0.0005 (16)
N50.0421 (18)0.0480 (19)0.0379 (18)0.0021 (15)0.0108 (14)−0.0026 (15)
C30.057 (3)0.058 (3)0.038 (2)−0.015 (2)0.020 (2)−0.0046 (19)
N40.0434 (18)0.0510 (19)0.0352 (17)−0.0010 (16)0.0073 (14)−0.0014 (16)
N30.047 (2)0.055 (2)0.049 (2)0.0072 (17)0.0154 (17)−0.0032 (16)
C40.041 (2)0.068 (3)0.038 (2)−0.009 (2)0.0078 (18)0.009 (2)
C20.042 (2)0.049 (2)0.043 (2)−0.0064 (18)0.0212 (18)−0.0027 (18)
C50.040 (2)0.046 (2)0.045 (2)−0.0021 (17)0.0155 (19)0.0074 (18)
N60.0382 (18)0.049 (2)0.0414 (19)0.0006 (15)0.0156 (15)−0.0023 (16)
O30.0543 (17)0.0578 (17)0.0413 (16)−0.0174 (14)0.0136 (13)−0.0034 (13)
O20.0527 (18)0.070 (2)0.0460 (17)−0.0192 (14)0.0180 (14)−0.0189 (14)
O10.077 (2)0.080 (2)0.0499 (17)−0.0107 (17)0.0314 (16)0.0090 (16)
N1—C51.329 (4)C3—H30.93
N1—C11.352 (4)N4—N31.318 (4)
N1—H10.86N4—H4A0.86
C6—N51.323 (4)C4—C51.363 (5)
C6—N21.352 (4)C4—H40.93
C6—C11.446 (5)C2—H20.93
N2—N31.314 (4)C5—H50.93
C1—C21.386 (5)N6—O11.228 (3)
N5—N41.318 (4)N6—O21.229 (4)
C3—C41.382 (5)N6—O31.286 (4)
C3—C21.383 (5)
C5—N1—C1123.0 (3)N5—N4—H4A122.8
C5—N1—H1118.5N3—N4—H4A122.8
C1—N1—H1118.5N2—N3—N4106.0 (3)
N5—C6—N2112.7 (3)C5—C4—C3118.9 (4)
N5—C6—C1124.7 (3)C5—C4—H4120.5
N2—C6—C1122.6 (3)C3—C4—H4120.5
N3—N2—C6105.6 (3)C3—C2—C1119.8 (4)
N1—C1—C2117.9 (3)C3—C2—H2120.1
N1—C1—C6119.3 (3)C1—C2—H2120.1
C2—C1—C6122.8 (3)N1—C5—C4120.5 (4)
N4—N5—C6101.3 (3)N1—C5—H5119.8
C4—C3—C2119.8 (4)C4—C5—H5119.8
C4—C3—H3120.1O1—N6—O2122.7 (3)
C2—C3—H3120.1O1—N6—O3119.3 (3)
N5—N4—N3114.4 (3)O2—N6—O3118.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O3i0.861.922.772 (4)172
N4—H4A···O30.861.872.717 (4)170
C2—H2···N2ii0.932.583.507 (5)173
C3—H3···O1iii0.932.523.435 (5)171
C5—H5···O2i0.932.543.218 (5)130
C5—H5···O2iv0.932.363.223 (5)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O3i0.861.922.772 (4)172
N4—H4A⋯O30.861.872.717 (4)170
C2—H2⋯N2ii0.932.583.507 (5)173
C3—H3⋯O1iii0.932.523.435 (5)171
C5—H5⋯O2i0.932.543.218 (5)130
C5—H5⋯O2iv0.932.363.223 (5)155

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  Novel, acentric metal-organic coordination polymers from hydrothermal reactions involving in situ ligand synthesis.

Authors:  Ren-Gen Xiong; Xiang Xue; Hong Zhao; Xiao-Zeng You; Brendan F Abrahams; Ziling Xue
Journal:  Angew Chem Int Ed Engl       Date:  2002-10-18       Impact factor: 15.336

2.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Syntheses, crystal structures, and luminescent properties of three novel zinc coordination polymers with tetrazolyl ligands.

Authors:  Xi-Sen Wang; Yun-Zhi Tang; Xue-Feng Huang; Zhi-Rong Qu; Chi-Ming Che; Philip Wai Hong Chan; Ren-Gen Xiong
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4.  2-{4-[5-(3-Pyrid-yl)-2H-tetra-zol-2-ylmeth-yl]phen-yl}benzonitrile.

Authors:  Wei Dai; Da-Wei Fu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-09

5.  Diaqua-[5-(2-pyrid-yl)tetra-zolato-κN,N]manganese(II).

Authors:  Xiao-Chun Wen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03
  5 in total

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