Literature DB >> 21583172

2-(4-{3-[1-(3-Bromo-prop-yl)-3,3-dimethyl-2,3-dihydro-1H-indol-2-yl-idene]prop-1-en-yl}-3-cyano-5,5-dimethyl-2,5-dihydro-furan-2-yl-idene)malononitrile.

Graeme J Gainsford1, M Delower H Bhuiyan, Andrew J Kay.   

Abstract

The backbone of the title mol-ecule, C(26)H(25)BrN(4)O, is approximately planar: the dihedral angle between the planes of the indoline ring system and the furan ring is 7.68 (14)°. In the crystal, layers lying parallel to (10) occur, with the mol-ecules inter-acting via weak C-H⋯N(cyano) and C-H⋯Br bonds and short N(cyano)⋯Br contacts [3.345 (4) Å].

Entities:  

Year:  2009        PMID: 21583172      PMCID: PMC2969784          DOI: 10.1107/S1600536809017747

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to zwitterionic dyes and their applications, see: Dalton (2002 ▶); Gainsford et al. (2007 ▶, 2008 ▶); Kay et al. (2004 ▶). For related structures, see: Li et al. (2005 ▶); Marder et al. (1993 ▶); Mushkalo & Sogulayaev (1986 ▶); Wang et al. (2007 ▶). For a description of the Cambridge Stuctural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C26H25BrN4O M = 489.41 Monoclinic, a = 10.2349 (4) Å b = 9.4017 (4) Å c = 24.4524 (10) Å β = 96.175 (2)° V = 2339.29 (17) Å3 Z = 4 Mo Kα radiation μ = 1.78 mm−1 T = 122 K 0.85 × 0.36 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.549, T max = 0.746 (expected range = 0.616–0.837) 56895 measured reflections 6791 independent reflections 5482 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.156 S = 1.19 6791 reflections 293 parameters H-atom parameters constrained Δρmax = 3.08 e Å−3 Δρmin = −0.60 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT and SADABS (Bruker, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶), PLATON (Spek, 2009 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97 and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809017747/hb2973sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017747/hb2973Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H25BrN4OF(000) = 1008
Mr = 489.41Dx = 1.390 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9973 reflections
a = 10.2349 (4) Åθ = 2.3–29.3°
b = 9.4017 (4) ŵ = 1.78 mm1
c = 24.4524 (10) ÅT = 122 K
β = 96.175 (2)°Block, red
V = 2339.29 (17) Å30.85 × 0.36 × 0.10 mm
Z = 4
Bruker APEXII CCD diffractometer6791 independent reflections
Radiation source: fine-focus sealed tube5482 reflections with I > 2σ(I)
graphiteRint = 0.044
Detector resolution: 8.333 pixels mm-1θmax = 30.0°, θmin = 2.5°
φ and ω scansh = −14→14
Absorption correction: multi-scan (Blessing, 1995)k = −13→13
Tmin = 0.549, Tmax = 0.746l = −34→34
56895 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H-atom parameters constrained
S = 1.19w = 1/[σ2(Fo2) + (0.0596P)2 + 4.5665P] where P = (Fo2 + 2Fc2)/3
6791 reflections(Δ/σ)max = 0.001
293 parametersΔρmax = 3.08 e Å3
0 restraintsΔρmin = −0.60 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br11.04264 (4)−0.19667 (4)0.464951 (13)0.03123 (11)
O10.4789 (2)0.4651 (2)0.11618 (9)0.0259 (5)
N10.5733 (4)0.9332 (3)0.18253 (17)0.0487 (9)
N20.3317 (4)0.7471 (5)0.04014 (15)0.0487 (9)
N30.7924 (3)0.6919 (3)0.24466 (12)0.0302 (6)
N41.0399 (2)0.1410 (3)0.36430 (10)0.0183 (4)
C10.5374 (4)0.8345 (4)0.15816 (16)0.0330 (7)
C20.4909 (3)0.7121 (3)0.12784 (14)0.0258 (6)
C30.4020 (3)0.7300 (4)0.07938 (15)0.0317 (7)
C40.6310 (3)0.3831 (3)0.18773 (11)0.0186 (5)
C50.5308 (3)0.3319 (3)0.14217 (12)0.0210 (6)
C60.5325 (3)0.5769 (3)0.14380 (12)0.0210 (5)
C70.6286 (3)0.5313 (3)0.18679 (12)0.0195 (5)
C80.5913 (3)0.2449 (4)0.09903 (13)0.0263 (6)
H8A0.52380.22250.06880.040*
H8B0.62740.15640.11560.040*
H8C0.66190.29970.08490.040*
C90.4168 (3)0.2573 (4)0.16424 (16)0.0308 (7)
H9A0.37570.32150.18900.046*
H9B0.44860.17200.18450.046*
H9C0.35200.23000.13360.046*
C100.7165 (3)0.6235 (3)0.21904 (12)0.0213 (5)
C110.7057 (3)0.2857 (3)0.22079 (12)0.0208 (5)
H110.69350.18770.21230.025*
C120.7964 (3)0.3200 (3)0.26505 (12)0.0213 (6)
H120.80670.41700.27550.026*
C130.8724 (3)0.2188 (3)0.29458 (12)0.0209 (5)
H130.85880.12240.28380.025*
C140.9674 (3)0.2454 (3)0.33870 (11)0.0182 (5)
C151.1325 (3)0.1961 (3)0.40603 (11)0.0201 (5)
C161.2270 (3)0.1236 (3)0.43992 (12)0.0214 (5)
H161.23630.02330.43770.026*
C171.3078 (3)0.2043 (4)0.47734 (13)0.0280 (6)
H171.37400.15830.50120.034*
C181.2933 (3)0.3511 (4)0.48045 (14)0.0293 (7)
H181.35000.40400.50630.035*
C191.1968 (3)0.4214 (4)0.44613 (13)0.0267 (6)
H191.18600.52150.44850.032*
C201.1171 (3)0.3418 (3)0.40854 (12)0.0203 (5)
C211.0071 (3)0.3868 (3)0.36571 (11)0.0193 (5)
C221.0602 (3)0.4925 (3)0.32554 (14)0.0272 (6)
H22A1.12780.44590.30640.041*
H22B1.09840.57480.34600.041*
H22C0.98820.52410.29860.041*
C230.8931 (3)0.4525 (4)0.39357 (13)0.0263 (6)
H23A0.82240.48060.36540.039*
H23B0.92480.53630.41480.039*
H23C0.85960.38230.41820.039*
C241.0321 (3)−0.0092 (3)0.34754 (12)0.0206 (5)
H24A1.1117−0.05920.36430.025*
H24B1.0317−0.01470.30710.025*
C250.9108 (3)−0.0860 (3)0.36403 (12)0.0237 (6)
H25A0.8316−0.03890.34550.028*
H25B0.9116−0.18490.35020.028*
C260.8990 (3)−0.0903 (4)0.42482 (13)0.0281 (6)
H26A0.8143−0.13490.43110.034*
H26B0.89900.00820.43920.034*
U11U22U33U12U13U23
Br10.0428 (2)0.02650 (17)0.02325 (16)−0.00417 (14)−0.00169 (12)0.00277 (13)
O10.0256 (10)0.0217 (10)0.0283 (11)0.0037 (8)−0.0076 (8)0.0013 (9)
N10.061 (2)0.0208 (15)0.061 (2)0.0085 (15)−0.0063 (18)−0.0004 (15)
N20.0389 (18)0.065 (2)0.0400 (19)0.0197 (17)−0.0053 (15)0.0059 (17)
N30.0309 (14)0.0266 (14)0.0326 (14)0.0013 (11)0.0015 (11)−0.0061 (12)
N40.0171 (10)0.0198 (11)0.0173 (11)−0.0004 (9)−0.0010 (8)0.0007 (9)
C10.0345 (17)0.0250 (16)0.0390 (19)0.0095 (13)0.0019 (14)0.0068 (14)
C20.0247 (14)0.0243 (15)0.0280 (15)0.0087 (12)0.0012 (11)0.0049 (12)
C30.0285 (16)0.0319 (18)0.0348 (18)0.0122 (13)0.0032 (13)0.0056 (14)
C40.0176 (12)0.0212 (13)0.0169 (12)0.0015 (10)0.0013 (9)−0.0016 (10)
C50.0188 (12)0.0187 (13)0.0242 (14)0.0030 (10)−0.0044 (10)0.0021 (10)
C60.0196 (12)0.0221 (14)0.0210 (13)0.0046 (10)0.0017 (10)0.0015 (11)
C70.0198 (12)0.0193 (13)0.0193 (13)0.0032 (10)0.0012 (10)−0.0007 (10)
C80.0299 (16)0.0261 (15)0.0221 (14)0.0014 (12)−0.0016 (12)−0.0022 (12)
C90.0172 (13)0.0291 (16)0.046 (2)0.0003 (12)0.0014 (13)0.0062 (14)
C100.0228 (13)0.0179 (13)0.0232 (14)0.0042 (10)0.0034 (10)−0.0013 (11)
C110.0215 (13)0.0190 (13)0.0212 (13)0.0018 (10)−0.0016 (10)0.0005 (10)
C120.0209 (13)0.0216 (14)0.0210 (13)0.0000 (10)0.0004 (10)−0.0001 (10)
C130.0226 (13)0.0192 (13)0.0200 (13)−0.0012 (10)−0.0021 (10)0.0001 (10)
C140.0178 (12)0.0204 (13)0.0165 (12)0.0000 (10)0.0018 (10)0.0025 (10)
C150.0159 (11)0.0288 (14)0.0155 (12)−0.0019 (11)0.0017 (9)0.0028 (11)
C160.0188 (12)0.0238 (14)0.0212 (13)−0.0010 (10)0.0002 (10)0.0026 (11)
C170.0198 (13)0.0391 (18)0.0237 (14)−0.0021 (13)−0.0043 (11)0.0043 (13)
C180.0241 (14)0.0344 (17)0.0271 (15)−0.0080 (13)−0.0074 (12)−0.0015 (13)
C190.0272 (14)0.0232 (15)0.0283 (15)−0.0074 (12)−0.0040 (12)0.0001 (12)
C200.0194 (12)0.0221 (13)0.0188 (13)−0.0042 (10)−0.0008 (10)0.0024 (10)
C210.0201 (12)0.0191 (13)0.0179 (12)−0.0038 (10)−0.0011 (10)0.0024 (10)
C220.0296 (15)0.0215 (14)0.0296 (15)−0.0067 (12)−0.0014 (12)0.0065 (12)
C230.0253 (14)0.0252 (15)0.0278 (15)−0.0004 (12)0.0009 (11)−0.0057 (12)
C240.0237 (13)0.0194 (13)0.0184 (13)0.0011 (10)0.0012 (10)−0.0014 (10)
C250.0253 (14)0.0222 (14)0.0227 (14)−0.0060 (11)−0.0021 (11)−0.0002 (11)
C260.0278 (15)0.0312 (17)0.0261 (15)−0.0029 (13)0.0061 (12)0.0006 (13)
Br1—C261.953 (3)C13—H130.9500
O1—C61.336 (4)C14—C211.520 (4)
O1—C51.476 (3)C15—C201.382 (4)
N1—C11.142 (5)C15—C161.383 (4)
N2—C31.147 (5)C16—C171.390 (4)
N3—C101.142 (4)C16—H160.9500
N4—C141.344 (4)C17—C181.392 (5)
N4—C151.414 (4)C17—H170.9500
N4—C241.470 (4)C18—C191.393 (4)
C1—C21.423 (5)C18—H180.9500
C2—C61.383 (4)C19—C201.382 (4)
C2—C31.424 (5)C19—H190.9500
C4—C71.394 (4)C20—C211.513 (4)
C4—C111.395 (4)C21—C221.537 (4)
C4—C51.510 (4)C21—C231.542 (4)
C5—C91.510 (4)C22—H22A0.9800
C5—C81.519 (4)C22—H22B0.9800
C6—C71.426 (4)C22—H22C0.9800
C7—C101.424 (4)C23—H23A0.9800
C8—H8A0.9800C23—H23B0.9800
C8—H8B0.9800C23—H23C0.9800
C8—H8C0.9800C24—C251.528 (4)
C9—H9A0.9800C24—H24A0.9900
C9—H9B0.9800C24—H24B0.9900
C9—H9C0.9800C25—C261.505 (4)
C11—C121.386 (4)C25—H25A0.9900
C11—H110.9500C25—H25B0.9900
C12—C131.383 (4)C26—H26A0.9900
C12—H120.9500C26—H26B0.9900
C13—C141.395 (4)
C6—O1—C5109.9 (2)C15—C16—C17117.0 (3)
C14—N4—C15111.2 (2)C15—C16—H16121.5
C14—N4—C24124.2 (2)C17—C16—H16121.5
C15—N4—C24124.4 (2)C16—C17—C18121.2 (3)
N1—C1—C2179.2 (4)C16—C17—H17119.4
C6—C2—C1121.4 (3)C18—C17—H17119.4
C6—C2—C3119.5 (3)C17—C18—C19120.7 (3)
C1—C2—C3119.1 (3)C17—C18—H18119.7
N2—C3—C2178.6 (4)C19—C18—H18119.7
C7—C4—C11132.4 (3)C20—C19—C18118.3 (3)
C7—C4—C5107.3 (2)C20—C19—H19120.9
C11—C4—C5120.3 (3)C18—C19—H19120.9
O1—C5—C4103.4 (2)C15—C20—C19120.3 (3)
O1—C5—C9107.0 (2)C15—C20—C21109.1 (2)
C4—C5—C9112.0 (3)C19—C20—C21130.6 (3)
O1—C5—C8108.2 (2)C20—C21—C14101.6 (2)
C4—C5—C8112.9 (2)C20—C21—C22109.6 (2)
C9—C5—C8112.7 (3)C14—C21—C22112.6 (2)
O1—C6—C2118.9 (3)C20—C21—C23110.4 (2)
O1—C6—C7110.4 (2)C14—C21—C23111.2 (2)
C2—C6—C7130.6 (3)C22—C21—C23111.1 (3)
C4—C7—C10126.2 (3)C21—C22—H22A109.5
C4—C7—C6108.8 (3)C21—C22—H22B109.5
C10—C7—C6124.7 (3)H22A—C22—H22B109.5
C5—C8—H8A109.5C21—C22—H22C109.5
C5—C8—H8B109.5H22A—C22—H22C109.5
H8A—C8—H8B109.5H22B—C22—H22C109.5
C5—C8—H8C109.5C21—C23—H23A109.5
H8A—C8—H8C109.5C21—C23—H23B109.5
H8B—C8—H8C109.5H23A—C23—H23B109.5
C5—C9—H9A109.5C21—C23—H23C109.5
C5—C9—H9B109.5H23A—C23—H23C109.5
H9A—C9—H9B109.5H23B—C23—H23C109.5
C5—C9—H9C109.5N4—C24—C25113.6 (2)
H9A—C9—H9C109.5N4—C24—H24A108.8
H9B—C9—H9C109.5C25—C24—H24A108.8
N3—C10—C7176.1 (3)N4—C24—H24B108.8
C12—C11—C4125.4 (3)C25—C24—H24B108.8
C12—C11—H11117.3H24A—C24—H24B107.7
C4—C11—H11117.3C26—C25—C24115.3 (2)
C13—C12—C11122.7 (3)C26—C25—H25A108.5
C13—C12—H12118.7C24—C25—H25A108.5
C11—C12—H12118.7C26—C25—H25B108.5
C12—C13—C14125.9 (3)C24—C25—H25B108.5
C12—C13—H13117.0H25A—C25—H25B107.5
C14—C13—H13117.0C25—C26—Br1112.0 (2)
N4—C14—C13122.2 (3)C25—C26—H26A109.2
N4—C14—C21109.2 (2)Br1—C26—H26A109.2
C13—C14—C21128.6 (3)C25—C26—H26B109.2
C20—C15—C16122.5 (3)Br1—C26—H26B109.2
C20—C15—N4108.9 (2)H26A—C26—H26B107.9
C16—C15—N4128.5 (3)
C6—O1—C5—C4−3.6 (3)C12—C13—C14—C212.0 (5)
C6—O1—C5—C9114.8 (3)C14—N4—C15—C201.6 (3)
C6—O1—C5—C8−123.5 (3)C24—N4—C15—C20176.2 (2)
C7—C4—C5—O11.8 (3)C14—N4—C15—C16−177.6 (3)
C11—C4—C5—O1−177.6 (3)C24—N4—C15—C16−3.0 (4)
C7—C4—C5—C9−113.0 (3)C20—C15—C16—C17−0.1 (4)
C11—C4—C5—C967.6 (3)N4—C15—C16—C17179.0 (3)
C7—C4—C5—C8118.5 (3)C15—C16—C17—C180.2 (5)
C11—C4—C5—C8−60.9 (4)C16—C17—C18—C190.3 (5)
C5—O1—C6—C2−176.3 (3)C17—C18—C19—C20−0.8 (5)
C5—O1—C6—C74.1 (3)C16—C15—C20—C19−0.5 (4)
C1—C2—C6—O1175.3 (3)N4—C15—C20—C19−179.7 (3)
C3—C2—C6—O1−6.1 (5)C16—C15—C20—C21179.2 (3)
C1—C2—C6—C7−5.1 (5)N4—C15—C20—C210.0 (3)
C3—C2—C6—C7173.4 (3)C18—C19—C20—C150.9 (5)
C11—C4—C7—C106.0 (5)C18—C19—C20—C21−178.7 (3)
C5—C4—C7—C10−173.3 (3)C15—C20—C21—C14−1.4 (3)
C11—C4—C7—C6179.7 (3)C19—C20—C21—C14178.3 (3)
C5—C4—C7—C60.5 (3)C15—C20—C21—C22−120.6 (3)
O1—C6—C7—C4−2.9 (3)C19—C20—C21—C2259.1 (4)
C2—C6—C7—C4177.6 (3)C15—C20—C21—C23116.7 (3)
O1—C6—C7—C10171.0 (3)C19—C20—C21—C23−63.6 (4)
C2—C6—C7—C10−8.6 (5)N4—C14—C21—C202.3 (3)
C7—C4—C11—C123.6 (5)C13—C14—C21—C20−177.8 (3)
C5—C4—C11—C12−177.2 (3)N4—C14—C21—C22119.4 (3)
C4—C11—C12—C13−176.6 (3)C13—C14—C21—C22−60.7 (4)
C11—C12—C13—C14178.5 (3)N4—C14—C21—C23−115.1 (3)
C15—N4—C14—C13177.6 (3)C13—C14—C21—C2364.8 (4)
C24—N4—C14—C132.9 (4)C14—N4—C24—C25−76.2 (3)
C15—N4—C14—C21−2.5 (3)C15—N4—C24—C25109.9 (3)
C24—N4—C14—C21−177.1 (2)N4—C24—C25—C26−60.1 (4)
C12—C13—C14—N4−178.1 (3)C24—C25—C26—Br1−63.5 (3)
D—H···AD—HH···AD···AD—H···A
C9—H9B···N1i0.982.593.449 (5)147
C23—H23B···Br1ii0.982.993.962 (4)171
C26—H26B···Br1iii0.992.953.815 (4)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9B⋯N1i0.982.593.449 (5)147
C23—H23B⋯Br1ii0.982.993.962 (4)171
C26—H26B⋯Br1iii0.992.953.815 (4)147

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Geometry and bond-length alternation in nonlinear optical materials. I. Standard parameters in two precursors.

Authors:  Graeme J Gainsford; M Delower H Bhuiyan; Andrew J Kay
Journal:  Acta Crystallogr C       Date:  2007-10-13       Impact factor: 1.172

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Geometry and bond-length alternation in nonlinear optical materials. III. Structural parameters of two chromophores containing aromatizable donorsPart II: Gainsford, Bhuiyan & Kay (2008a).

Authors:  Graeme J Gainsford; M Delower H Bhuiyan; Andrew J Kay
Journal:  Acta Crystallogr C       Date:  2008-10-25       Impact factor: 1.172

5.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  1 in total

1.  2-(3-Cyano-4-{7-[1-(2-hy-droxy-eth-yl)-3,3-dimethyl-indolin-2-yl-idene]hepta-1,3,5-trien-yl}-5,5-dimethyl-2,5-dihydro-furan-2-yl-idene)malononitrile.

Authors:  Graeme J Gainsford; M Delower H Bhuiyan; Andrew J Kay
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22
  1 in total

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