Literature DB >> 21583167

Oxonium 2-carb-oxy-3-(2-fur-yl)acrylate.

Wen-Xian Liang1, Gang Wang, Zhi-Rong Qu.   

Abstract

In the title compound, H(3)O(+)·C(8)H(5)O(5) (-), neighbouring cations and anions are linked by O-H⋯O hydrogen bonds, forming a one-dimensional chain framework along [001]. The crystal structure is further stabilized by π-π inter-actions, with centroid-centroid distances of 3.734 (3) Å.

Entities:  

Year:  2009        PMID: 21583167      PMCID: PMC2969612          DOI: 10.1107/S1600536809017760

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of β-amino­acids as precursors of novel biologically active compounds, see: O’Callaghan, et al. (1998 ▶); Cohen et al. (2002 ▶); Zeller et al. (1965 ▶).

Experimental

Crystal data

H3OC8H5O5 M = 200.14 Monoclinic, a = 13.664 (3) Å b = 8.7518 (18) Å c = 7.4664 (15) Å β = 99.13 (3)° V = 881.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.50 × 0.45 × 0.15 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.935, T max = 0.980 7954 measured reflections 1727 independent reflections 1406 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.218 S = 1.06 1727 reflections 128 parameters H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −0.75 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: PRPKAPPA (Ferguson, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809017760/rz2321sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017760/rz2321Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
H3O+·C8H5O5F(000) = 416
Mr = 200.14Dx = 1.508 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1406 reflections
a = 13.664 (3) Åθ = 3.1–27.4°
b = 8.7518 (18) ŵ = 0.13 mm1
c = 7.4664 (15) ÅT = 293 K
β = 99.13 (3)°Prism, colourless
V = 881.5 (3) Å30.50 × 0.45 × 0.15 mm
Z = 4
Rigaku SCXmini diffractometer1727 independent reflections
Radiation source: fine-focus sealed tube1406 reflections with I > 2σ(I)
graphiteRint = 0.030
Detector resolution: 13.6612 pixels mm-1θmax = 26.0°, θmin = 3.0°
CCD profile fitting scansh = −16→16
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −10→10
Tmin = 0.935, Tmax = 0.980l = −9→9
7954 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.071H-atom parameters constrained
wR(F2) = 0.218w = 1/[σ2(Fo2) + (0.1228P)2 + 1.0867P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1727 reflectionsΔρmax = 0.46 e Å3
128 parametersΔρmin = −0.74 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008)
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0014 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6364 (2)0.3648 (4)0.3879 (4)0.0326 (7)
C20.6705 (3)0.2258 (4)0.3518 (5)0.0471 (9)
H20.73340.20210.32750.057*
C30.5905 (3)0.1220 (4)0.3582 (6)0.0552 (10)
H30.59180.01680.34080.066*
C40.5149 (3)0.2026 (5)0.3932 (6)0.0548 (10)
H40.45300.16260.40320.066*
C50.6780 (2)0.5157 (3)0.4112 (4)0.0316 (7)
H50.63930.58940.45620.038*
C60.7666 (2)0.5621 (3)0.3751 (4)0.0294 (7)
C70.8392 (2)0.4604 (3)0.3007 (4)0.0281 (7)
C80.8008 (2)0.7221 (3)0.4080 (4)0.0299 (7)
O10.53944 (18)0.3521 (3)0.4129 (4)0.0502 (7)
O20.73994 (16)0.8126 (3)0.4760 (3)0.0389 (6)
H2A0.76940.89020.51530.058*
O30.88184 (17)0.7637 (3)0.3750 (3)0.0436 (7)
O40.84296 (16)0.4683 (2)0.1332 (3)0.0354 (6)
O50.89313 (18)0.3763 (3)0.4078 (3)0.0431 (6)
O1W0.9457 (2)0.4115 (3)0.7823 (4)0.0579 (8)
H1WC0.94630.41300.89630.087*
H1WA0.97970.33620.75490.087*
H1WB0.97030.49410.74950.087*
U11U22U33U12U13U23
C10.0310 (16)0.0324 (16)0.0356 (16)−0.0014 (12)0.0094 (12)0.0014 (12)
C20.0446 (19)0.0367 (19)0.059 (2)0.0089 (15)0.0065 (16)−0.0065 (16)
C30.068 (3)0.0307 (18)0.064 (2)−0.0096 (18)0.001 (2)−0.0026 (17)
C40.050 (2)0.048 (2)0.067 (3)−0.0196 (18)0.0112 (18)−0.0031 (19)
C50.0362 (17)0.0269 (15)0.0333 (15)0.0027 (12)0.0106 (12)−0.0005 (12)
C60.0336 (16)0.0230 (14)0.0319 (15)0.0023 (12)0.0062 (12)−0.0003 (11)
C70.0301 (15)0.0205 (13)0.0344 (16)−0.0016 (11)0.0074 (12)0.0002 (11)
C80.0331 (16)0.0250 (14)0.0318 (15)0.0008 (12)0.0061 (12)−0.0013 (12)
O10.0416 (14)0.0451 (15)0.0675 (17)−0.0090 (11)0.0199 (12)−0.0047 (12)
O20.0382 (12)0.0280 (11)0.0521 (14)0.0001 (9)0.0120 (10)−0.0121 (10)
O30.0409 (13)0.0333 (12)0.0602 (16)−0.0059 (10)0.0195 (11)−0.0077 (11)
O40.0447 (13)0.0290 (12)0.0352 (12)0.0061 (9)0.0149 (9)0.0025 (9)
O50.0481 (14)0.0401 (13)0.0397 (12)0.0148 (11)0.0030 (10)0.0027 (10)
O1W0.0586 (17)0.0583 (17)0.0589 (17)−0.0026 (14)0.0162 (13)0.0010 (13)
C1—C21.345 (5)C6—C81.485 (4)
C1—O11.372 (4)C6—C71.503 (4)
C1—C51.437 (4)C7—O51.240 (4)
C2—C31.428 (6)C7—O41.262 (4)
C2—H20.9300C8—O31.226 (4)
C3—C41.311 (6)C8—O21.308 (4)
C3—H30.9300O2—H2A0.8200
C4—O11.352 (5)O1W—H1WC0.8500
C4—H40.9300O1W—H1WA0.8500
C5—C61.344 (4)O1W—H1WB0.8500
C5—H50.9300
C2—C1—O1109.0 (3)C5—C6—C8121.5 (3)
C2—C1—C5135.4 (3)C5—C6—C7124.3 (3)
O1—C1—C5115.5 (3)C8—C6—C7114.3 (2)
C1—C2—C3106.1 (3)O5—C7—O4123.9 (3)
C1—C2—H2126.9O5—C7—C6118.2 (3)
C3—C2—H2126.9O4—C7—C6117.8 (3)
C4—C3—C2107.2 (3)O3—C8—O2123.2 (3)
C4—C3—H3126.4O3—C8—C6121.1 (3)
C2—C3—H3126.4O2—C8—C6115.6 (3)
C3—C4—O1110.7 (3)C4—O1—C1107.0 (3)
C3—C4—H4124.7C8—O2—H2A109.5
O1—C4—H4124.7H1WC—O1W—H1WA109.5
C6—C5—C1127.2 (3)H1WC—O1W—H1WB109.5
C6—C5—H5116.4H1WA—O1W—H1WB109.5
C1—C5—H5116.4
D—H···AD—HH···AD···AD—H···A
O1W—H1WB···O4i0.852.583.044 (4)115
O1W—H1WA···O3i0.852.423.188 (4)150
O1W—H1WC···O4ii0.852.483.201 (4)143
O2—H2A···O4iii0.821.742.552 (3)169
Group 1Group 2α /°DCC /Åτ /°
Cg1Cg1i16.423.734 (3)19.96
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WB⋯O4i0.852.583.044 (4)115
O1W—H1WA⋯O3i0.852.423.188 (4)150
O1W—H1WC⋯O4ii0.852.483.201 (4)143
O2—H2A⋯O4iii0.821.742.552 (3)169

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  OPHIDIAN L-AMINO ACID OXIDASE. THE NATURE OF THE ENZYME-SUBSTRATE COMPLEXES.

Authors:  E A ZELLER; G RAMACHANDER; G A FLEISHER; T ISHIMARU; V ZELLER
Journal:  Biochem J       Date:  1965-04       Impact factor: 3.857

  2 in total

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