Literature DB >> 21583155

2-{4-[(2,2-Dimethyl-4,6-dioxo-1,3-dioxan-5-yl-idene)methyl-amino]phen-yl}acetonitrile.

Rui Li, Zhen-Yu Ding, Yu-Quan Wei, Jian Ding.   

Abstract

The title compound, C(15)H(14)N(2)O(4), is approximately planar, with a dihedral angle of 6.48 (4)° between the amino-methyl-ene unit and the planar five-atom part of the dioxane ring, and a dihedral angle of 2.40 (4)° between amino-methyl-ene unit and the phenyl-ene ring. The dioxane ring is envelope shaped, with the dimethyl-substituted C atom that represents the flap 0.535 (8) Å out of the plane. The mol-ecule has an intra-molecular N-H⋯O hydrogen bond.

Entities:  

Year:  2009        PMID: 21583155      PMCID: PMC2969579          DOI: 10.1107/S1600536809017437

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of related compounds, see: Cassis et al. (1985 ▶). For the synthesis of related anti­tumor precursors, see: Ruchelman et al. (2003 ▶). For the crystal structure of a related compound, see: da Silva et al. (2006 ▶). For Meldrum’s acid, see: Meldrum (1908 ▶).

Experimental

Crystal data

C15H14N2O4 M = 286.28 Triclinic, a = 5.204 (3) Å b = 11.239 (3) Å c = 12.209 (4) Å α = 85.51 (3)° β = 82.30 (3)° γ = 84.54 (2)° V = 702.9 (5) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 292 K 0.52 × 0.48 × 0.23 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 3217 measured reflections 2609 independent reflections 1610 reflections with I > 2σ(I) R int = 0.003 3 standard reflections every 150 reflections intensity decay: 1.3%

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.150 S = 1.09 2609 reflections 196 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.20 e Å−3 Data collection: DIFRAC (Gabe & White, 1993 ▶); cell refinement: DIFRAC; data reduction: NRCVAX (Gabe et al., 1989 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, New_Global_Publ_Block. DOI: 10.1107/S1600536809017437/ng2579sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017437/ng2579Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14N2O4Z = 2
Mr = 286.28F(000) = 300
Triclinic, P1Dx = 1.353 Mg m3
a = 5.204 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 11.239 (3) ÅCell parameters from 26 reflections
c = 12.209 (4) Åθ = 5.5–9.7°
α = 85.51 (3)°µ = 0.10 mm1
β = 82.30 (3)°T = 292 K
γ = 84.54 (2)°Block, colourless
V = 702.9 (5) Å30.52 × 0.48 × 0.23 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.003
Radiation source: fine-focus sealed tubeθmax = 25.5°, θmin = 1.7°
graphiteh = −6→6
ω/2–θ scansk = −2→13
3217 measured reflectionsl = −14→14
2609 independent reflections3 standard reflections every 150 reflections
1610 reflections with I > 2σ(I) intensity decay: 1.3%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: mixed
wR(F2) = 0.150H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0853P)2] where P = (Fo2 + 2Fc2)/3
2609 reflections(Δ/σ)max < 0.001
196 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5677 (3)0.03464 (12)0.29695 (11)0.0620 (4)
O20.8342 (3)0.19500 (12)0.26775 (11)0.0573 (4)
O30.2465 (3)0.02806 (12)0.43304 (11)0.0639 (4)
O40.7647 (3)0.35124 (12)0.36881 (12)0.0634 (4)
N10.1001 (3)0.22676 (14)0.54592 (13)0.0498 (4)
H1N0.074 (5)0.145 (2)0.5335 (18)0.091 (8)*
N2−0.9365 (5)0.3352 (2)0.9847 (2)0.1123 (9)
C10.9231 (5)0.0301 (2)0.1573 (2)0.0831 (8)
H1A1.01960.07540.09840.125*
H1B0.8480−0.03290.12710.125*
H1C1.0377−0.00400.20900.125*
C20.5317 (5)0.1765 (2)0.13934 (18)0.0744 (7)
H2A0.39120.22030.18230.112*
H2B0.46290.11980.09860.112*
H2C0.62680.23110.08860.112*
C30.7107 (4)0.11099 (19)0.21537 (16)0.0573 (6)
C40.4120 (4)0.08606 (17)0.38115 (16)0.0519 (5)
C50.4624 (4)0.20480 (16)0.40360 (15)0.0471 (5)
C60.6901 (4)0.25836 (17)0.34787 (15)0.0477 (5)
C70.3046 (4)0.26618 (16)0.48329 (15)0.0493 (5)
H70.34590.34280.49410.059*
C8−0.0785 (4)0.29056 (16)0.62235 (15)0.0472 (5)
C9−0.2817 (4)0.23184 (17)0.67757 (17)0.0568 (6)
H9−0.29710.15280.66380.068*
C10−0.4632 (4)0.28879 (18)0.75328 (16)0.0573 (6)
H10−0.59970.24760.79010.069*
C11−0.4454 (4)0.40591 (18)0.77514 (16)0.0507 (5)
C12−0.2402 (4)0.46434 (17)0.71855 (16)0.0535 (5)
H12−0.22530.54350.73210.064*
C13−0.0575 (4)0.40860 (17)0.64268 (16)0.0541 (5)
H130.07860.44970.60550.065*
C14−0.6446 (4)0.47201 (19)0.85500 (16)0.0608 (6)
H14A−0.55480.51840.89940.073*
H14B−0.75410.52780.81300.073*
C15−0.8082 (5)0.3952 (2)0.92822 (19)0.0722 (7)
U11U22U33U12U13U23
O10.0652 (9)0.0508 (8)0.0660 (9)−0.0175 (7)0.0196 (7)−0.0113 (7)
O20.0452 (8)0.0627 (8)0.0639 (9)−0.0173 (7)0.0036 (7)−0.0054 (7)
O30.0655 (9)0.0509 (8)0.0712 (9)−0.0237 (7)0.0208 (7)−0.0066 (7)
O40.0655 (10)0.0527 (8)0.0744 (9)−0.0237 (7)−0.0061 (8)−0.0008 (7)
N10.0521 (10)0.0400 (9)0.0560 (9)−0.0069 (8)0.0003 (8)−0.0045 (7)
N20.112 (2)0.0951 (17)0.1082 (18)−0.0057 (15)0.0499 (16)0.0130 (14)
C10.0696 (17)0.0865 (18)0.0876 (17)−0.0170 (15)0.0277 (14)−0.0232 (15)
C20.0662 (15)0.0952 (18)0.0641 (14)−0.0285 (14)−0.0041 (12)−0.0003 (13)
C30.0520 (12)0.0619 (12)0.0571 (12)−0.0221 (11)0.0108 (10)−0.0073 (10)
C40.0511 (12)0.0481 (11)0.0539 (11)−0.0108 (10)0.0060 (10)−0.0019 (9)
C50.0457 (11)0.0442 (10)0.0507 (11)−0.0097 (9)−0.0017 (9)0.0007 (9)
C60.0449 (11)0.0456 (10)0.0523 (11)−0.0087 (9)−0.0041 (9)0.0016 (9)
C70.0522 (12)0.0413 (10)0.0537 (11)−0.0080 (9)−0.0031 (10)0.0001 (9)
C80.0477 (11)0.0442 (10)0.0489 (11)−0.0069 (9)−0.0019 (9)−0.0016 (8)
C90.0632 (14)0.0410 (11)0.0657 (13)−0.0151 (10)0.0017 (11)−0.0055 (10)
C100.0567 (13)0.0499 (11)0.0631 (13)−0.0166 (10)0.0086 (10)−0.0036 (10)
C110.0506 (12)0.0497 (11)0.0501 (11)−0.0044 (9)−0.0022 (9)0.0003 (9)
C120.0563 (13)0.0397 (10)0.0630 (12)−0.0061 (9)0.0018 (10)−0.0068 (9)
C130.0505 (12)0.0472 (11)0.0628 (12)−0.0106 (10)0.0037 (10)−0.0029 (9)
C140.0619 (14)0.0592 (12)0.0572 (12)−0.0039 (11)0.0071 (11)−0.0049 (10)
C150.0707 (16)0.0721 (15)0.0639 (14)0.0053 (13)0.0158 (12)0.0019 (12)
O1—C41.352 (2)C4—C51.438 (2)
O1—C31.439 (2)C5—C71.371 (3)
O2—C61.356 (2)C5—C61.444 (3)
O2—C31.426 (2)C7—H70.9300
O3—C41.210 (2)C8—C91.371 (3)
O4—C61.205 (2)C8—C131.386 (3)
N1—C71.316 (2)C9—C101.379 (3)
N1—C81.412 (2)C9—H90.9300
N1—H1n0.96 (2)C10—C111.378 (3)
N2—C151.125 (3)C10—H100.9300
C1—C31.500 (3)C11—C121.383 (3)
C1—H1A0.9600C11—C141.508 (3)
C1—H1B0.9600C12—C131.377 (3)
C1—H1C0.9600C12—H120.9300
C2—C31.505 (3)C13—H130.9300
C2—H2A0.9600C14—C151.444 (3)
C2—H2B0.9600C14—H14A0.9700
C2—H2C0.9600C14—H14B0.9700
C4—O1—C3118.27 (15)O4—C6—C5125.76 (19)
C6—O2—C3118.41 (15)O2—C6—C5115.95 (15)
C7—N1—C8127.60 (16)N1—C7—C5126.03 (17)
C7—N1—H1N112.8 (15)N1—C7—H7117.0
C8—N1—H1N119.5 (15)C5—C7—H7117.0
C3—C1—H1A109.5C9—C8—C13119.39 (18)
C3—C1—H1B109.5C9—C8—N1117.65 (16)
H1A—C1—H1B109.5C13—C8—N1122.96 (17)
C3—C1—H1C109.5C8—C9—C10120.69 (17)
H1A—C1—H1C109.5C8—C9—H9119.7
H1B—C1—H1C109.5C10—C9—H9119.7
C3—C2—H2A109.5C11—C10—C9120.89 (19)
C3—C2—H2B109.5C11—C10—H10119.6
H2A—C2—H2B109.5C9—C10—H10119.6
C3—C2—H2C109.5C10—C11—C12117.88 (19)
H2A—C2—H2C109.5C10—C11—C14122.30 (19)
H2B—C2—H2C109.5C12—C11—C14119.80 (17)
O2—C3—O1110.49 (15)C13—C12—C11121.86 (17)
O2—C3—C1106.90 (17)C13—C12—H12119.1
O1—C3—C1105.58 (18)C11—C12—H12119.1
O2—C3—C2109.82 (18)C12—C13—C8119.30 (18)
O1—C3—C2110.28 (17)C12—C13—H13120.4
C1—C3—C2113.65 (19)C8—C13—H13120.4
O3—C4—O1117.85 (16)C15—C14—C11114.09 (18)
O3—C4—C5125.29 (18)C15—C14—H14A108.7
O1—C4—C5116.83 (16)C11—C14—H14A108.7
C7—C5—C4120.65 (17)C15—C14—H14B108.7
C7—C5—C6118.69 (16)C11—C14—H14B108.7
C4—C5—C6120.53 (17)H14A—C14—H14B107.6
O4—C6—O2118.25 (17)N2—C15—C14179.5 (3)
C6—O2—C3—O1−49.2 (2)C8—N1—C7—C5−174.51 (18)
C6—O2—C3—C1−163.65 (17)C4—C5—C7—N10.3 (3)
C6—O2—C3—C272.6 (2)C6—C5—C7—N1−175.62 (18)
C4—O1—C3—O246.8 (2)C7—N1—C8—C9178.79 (18)
C4—O1—C3—C1162.08 (18)C7—N1—C8—C13−0.7 (3)
C4—O1—C3—C2−74.8 (2)C13—C8—C9—C10−0.4 (3)
C3—O1—C4—O3162.19 (19)N1—C8—C9—C10−179.96 (18)
C3—O1—C4—C5−19.5 (3)C8—C9—C10—C110.1 (3)
O3—C4—C5—C7−5.6 (3)C9—C10—C11—C120.2 (3)
O1—C4—C5—C7176.25 (17)C9—C10—C11—C14178.25 (19)
O3—C4—C5—C6170.2 (2)C10—C11—C12—C13−0.1 (3)
O1—C4—C5—C6−7.9 (3)C14—C11—C12—C13−178.27 (19)
C3—O2—C6—O4−158.33 (18)C11—C12—C13—C8−0.2 (3)
C3—O2—C6—C523.8 (2)C9—C8—C13—C120.4 (3)
C7—C5—C6—O44.2 (3)N1—C8—C13—C12179.96 (18)
C4—C5—C6—O4−171.73 (19)C10—C11—C14—C1516.7 (3)
C7—C5—C6—O2−178.17 (16)C12—C11—C14—C15−165.3 (2)
C4—C5—C6—O25.9 (3)C11—C14—C15—N2−69 (31)
D—H···AD—HH···AD···AD—H···A
N1—H1n···O30.97 (2)1.94 (2)2.710 (3)135 (2)
C7—H7···O40.932.492.816 (3)100
C9—H9···O3i0.932.413.292 (3)159
C13—H13···O4ii0.932.513.208 (3)132
C14—H14B···O4iii0.972.513.343 (3)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯O30.97 (2)1.94 (2)2.710 (3)135 (2)
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1.  2-(2-Nitro-phen-yl)-1,3-dioxan-5-ol.

Authors:  Jin Chen; Xukang Ren; Zhaobo Li; Xiaohua Du
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-12

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-15

4.  2,2-Dimethyl-5-(2-naphthyl-amino-methyl-ene)-1,3-dioxane-4,6-dione.

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