Literature DB >> 21578441

2-(2-Nitro-phen-yl)-1,3-dioxan-5-ol.

Jin Chen1, Xukang Ren, Zhaobo Li, Xiaohua Du.   

Abstract

In the title compound, C(10)H(11)NO(5), the six-membered 1,3-dioxane ring displays a chair conformation, with the hydr-oxy and 2-nitro-phenyl groups in equatorial positions, which minimizes steric hindrance. In the crystal, mol-ecules are linked into chains along the b axis by inter-molecular O-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21578441      PMCID: PMC2971292          DOI: 10.1107/S1600536809043402

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the condensation of glycerol with aldehydes and ketones to [1,3]dioxan-5-ols and [1,3]dioxolan-4-yl-methanols, see: Deutsch et al. (2007 ▶); Hill et al. (1928 ▶). Six-membered ring acetals are potential precursors for the production of the green platform chemicals, e.g. 1,3-dihydroxy­acetone and 1,3-propane­diol, see: Wang et al. (2003 ▶, 2009 ▶). For a related structure, see: Li et al. (2009 ▶).

Experimental

Crystal data

C10H11NO5 M = 225.20 Monoclinic, a = 8.0166 (4) Å b = 10.6499 (5) Å c = 12.4109 (6) Å β = 101.221 (1)° V = 1039.34 (9) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 296 K 0.35 × 0.19 × 0.12 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.960, T max = 0.986 9906 measured reflections 2346 independent reflections 1466 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.110 S = 1.00 2346 reflections 147 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.17 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809043402/pv2219sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809043402/pv2219Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H11NO5F(000) = 472
Mr = 225.20Dx = 1.439 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6214 reflections
a = 8.0166 (4) Åθ = 3.2–27.4°
b = 10.6499 (5) ŵ = 0.12 mm1
c = 12.4109 (6) ÅT = 296 K
β = 101.221 (1)°Chunk, colorless
V = 1039.34 (9) Å30.35 × 0.19 × 0.12 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer2346 independent reflections
Radiation source: rolling anode1466 reflections with I > 2σ(I)
graphiteRint = 0.025
Detector resolution: 10.00 pixels mm-1θmax = 27.4°, θmin = 3.2°
ω scansh = −9→10
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −13→13
Tmin = 0.960, Tmax = 0.986l = −16→15
9906 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.110w = 1/[σ2(Fo2) + (0.0372P)2 + 0.330P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
2346 reflectionsΔρmax = 0.18 e Å3
147 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0152 (19)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O30.65238 (15)0.68340 (10)0.28615 (9)0.0558 (3)
C50.78112 (19)0.53115 (14)0.41276 (12)0.0456 (4)
O20.70918 (18)0.73226 (11)0.47090 (10)0.0693 (4)
N10.89732 (19)0.48237 (15)0.24515 (13)0.0616 (4)
C90.8397 (2)0.31608 (16)0.36545 (16)0.0632 (5)
H90.87620.26000.31740.076*
C30.7680 (2)0.66933 (14)0.38712 (13)0.0485 (4)
H30.87970.70220.38040.058*
C100.83678 (19)0.44328 (15)0.34425 (13)0.0488 (4)
C60.7294 (2)0.48360 (17)0.50467 (14)0.0588 (5)
H60.69030.53860.55240.071*
C80.7884 (3)0.27296 (19)0.45772 (18)0.0716 (6)
H80.79050.18740.47300.086*
O40.9752 (2)0.57938 (16)0.24619 (14)0.0940 (5)
O10.6154 (2)1.02233 (13)0.3183 (2)0.1241 (8)
H1010.52921.04970.27870.149*
C20.7052 (3)0.86500 (18)0.45027 (19)0.0837 (7)
H2A0.81950.89490.45020.100*
H2B0.66280.90840.50820.100*
C10.5922 (3)0.89338 (17)0.3408 (2)0.0783 (7)
H10.47300.87750.34460.094*
C40.6432 (3)0.81319 (17)0.25365 (17)0.0706 (6)
H4A0.56100.82280.18560.085*
H4B0.75310.84030.24080.085*
C70.7342 (3)0.3565 (2)0.52745 (16)0.0700 (5)
H70.70040.32740.59050.084*
O50.8708 (2)0.41251 (17)0.16609 (13)0.1034 (6)
U11U22U33U12U13U23
O30.0629 (7)0.0404 (6)0.0568 (7)−0.0064 (5)−0.0067 (5)0.0055 (5)
C50.0449 (8)0.0405 (9)0.0484 (8)0.0015 (6)0.0018 (7)−0.0013 (7)
O20.0931 (9)0.0483 (7)0.0641 (8)0.0167 (6)0.0093 (7)−0.0112 (6)
N10.0601 (9)0.0607 (10)0.0658 (10)0.0037 (7)0.0165 (7)−0.0066 (8)
C90.0663 (11)0.0415 (10)0.0760 (12)0.0095 (8)−0.0007 (9)−0.0071 (9)
C30.0503 (9)0.0401 (9)0.0515 (9)0.0013 (7)0.0008 (7)−0.0043 (7)
C100.0465 (8)0.0448 (9)0.0529 (9)0.0027 (7)0.0044 (7)−0.0020 (7)
C60.0661 (11)0.0551 (11)0.0547 (10)0.0040 (8)0.0102 (8)0.0037 (8)
C80.0802 (13)0.0446 (11)0.0809 (13)−0.0019 (9)−0.0068 (11)0.0126 (10)
O40.1066 (12)0.0895 (12)0.0969 (11)−0.0285 (10)0.0472 (9)−0.0076 (9)
O10.0894 (11)0.0398 (9)0.214 (2)0.0013 (7)−0.0431 (13)0.0144 (10)
C20.0989 (16)0.0438 (11)0.0996 (16)0.0156 (10)−0.0026 (13)−0.0185 (10)
C10.0624 (11)0.0373 (10)0.1237 (18)0.0046 (8)−0.0106 (12)0.0036 (11)
C40.0676 (12)0.0457 (10)0.0879 (14)−0.0100 (8)−0.0114 (10)0.0209 (10)
C70.0750 (13)0.0679 (13)0.0638 (11)−0.0063 (10)0.0057 (10)0.0205 (10)
O50.1424 (15)0.1019 (13)0.0717 (9)−0.0136 (11)0.0352 (10)−0.0322 (9)
O3—C31.4142 (18)C6—C71.382 (3)
O3—C41.438 (2)C6—H60.9300
C5—C61.383 (2)C8—C71.369 (3)
C5—C101.395 (2)C8—H80.9300
C5—C31.505 (2)O1—C11.421 (2)
O2—C31.394 (2)O1—H1010.8200
O2—C21.436 (2)C2—C11.510 (3)
N1—O41.206 (2)C2—H2A0.9700
N1—O51.2167 (19)C2—H2B0.9700
N1—C101.468 (2)C1—C41.496 (3)
C9—C81.369 (3)C1—H10.9800
C9—C101.379 (2)C4—H4A0.9700
C9—H90.9300C4—H4B0.9700
C3—H30.9800C7—H70.9300
C3—O3—C4109.84 (12)C9—C8—H8120.2
C6—C5—C10116.10 (15)C7—C8—H8120.2
C6—C5—C3120.83 (15)C1—O1—H101109.5
C10—C5—C3123.00 (15)O2—C2—C1110.25 (16)
C3—O2—C2109.83 (15)O2—C2—H2A109.6
O4—N1—O5122.79 (18)C1—C2—H2A109.6
O4—N1—C10119.27 (15)O2—C2—H2B109.6
O5—N1—C10117.90 (16)C1—C2—H2B109.6
C8—C9—C10119.50 (18)H2A—C2—H2B108.1
C8—C9—H9120.3O1—C1—C4110.2 (2)
C10—C9—H9120.3O1—C1—C2106.94 (17)
O2—C3—O3110.58 (13)C4—C1—C2109.60 (16)
O2—C3—C5109.41 (14)O1—C1—H1110.0
O3—C3—C5107.32 (12)C4—C1—H1110.0
O2—C3—H3109.8C2—C1—H1110.0
O3—C3—H3109.8O3—C4—C1110.63 (17)
C5—C3—H3109.8O3—C4—H4A109.5
C9—C10—C5122.56 (16)C1—C4—H4A109.5
C9—C10—N1116.26 (16)O3—C4—H4B109.5
C5—C10—N1121.19 (15)C1—C4—H4B109.5
C7—C6—C5121.76 (18)H4A—C4—H4B108.1
C7—C6—H6119.1C8—C7—C6120.43 (19)
C5—C6—H6119.1C8—C7—H7119.8
C9—C8—C7119.65 (18)C6—C7—H7119.8
C2—O2—C3—O3−65.20 (18)O5—N1—C10—C933.6 (2)
C2—O2—C3—C5176.81 (14)O4—N1—C10—C535.4 (2)
C4—O3—C3—O264.54 (18)O5—N1—C10—C5−146.86 (17)
C4—O3—C3—C5−176.20 (14)C10—C5—C6—C70.5 (2)
C6—C5—C3—O23.4 (2)C3—C5—C6—C7177.47 (16)
C10—C5—C3—O2−179.88 (14)C10—C9—C8—C70.3 (3)
C6—C5—C3—O3−116.59 (16)C3—O2—C2—C158.5 (2)
C10—C5—C3—O360.11 (19)O2—C2—C1—O1−171.0 (2)
C8—C9—C10—C5−0.9 (3)O2—C2—C1—C4−51.6 (2)
C8—C9—C10—N1178.63 (16)C3—O3—C4—C1−57.32 (19)
C6—C5—C10—C90.4 (2)O1—C1—C4—O3168.64 (14)
C3—C5—C10—C9−176.42 (15)C2—C1—C4—O351.2 (2)
C6—C5—C10—N1−179.05 (14)C9—C8—C7—C60.6 (3)
C3—C5—C10—N14.1 (2)C5—C6—C7—C8−1.1 (3)
O4—N1—C10—C9−144.09 (18)
D—H···AD—HH···AD···AD—H···A
O1—H101···O3i0.822.082.8548 (18)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H101⋯O3i0.822.082.8548 (18)157

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-{4-[(2,2-Dimethyl-4,6-dioxo-1,3-dioxan-5-yl-idene)methyl-amino]phen-yl}acetonitrile.

Authors:  Rui Li; Zhen-Yu Ding; Yu-Quan Wei; Jian Ding
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-14
  2 in total

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