Literature DB >> 21583085

2,10-Dihydr-oxy-13-methyl-13-aza-tetra-cyclo-[9.3.1.0.0]penta-deca-3(8),4,6-triene-9,15-dione.

J Suresh, U C Nithya, R Suresh Kumar, S Perumal, P L Nilantha Lakshman.   

Abstract

In the title compound, C(15)H(15)NO(4), the n-methyl-piperidone ring adopts a chair conformation and both five-membered rings adopt a twist conformation. An intra-molecular O-H⋯O hydrogen bond is observed. Inversion-related mol-ecules are linked into R(2) (2)(10) dimers by pairs of O-H⋯O hydrogen bonds. The crystal structure is further stabilized by C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583085      PMCID: PMC2969762          DOI: 10.1107/S1600536809015785

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of piperidine compounds, see: Watson et al. (2000 ▶). For ring conformation details, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C15H15NO4 M = 273.28 Triclinic, a = 7.5616 (7) Å b = 8.9033 (8) Å c = 10.8091 (11) Å α = 72.764 (11)° β = 80.486 (12)° γ = 72.369 (11)° V = 660.09 (11) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.18 × 0.15 × 0.11 mm

Data collection

Nonius MACH-3 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.982, T max = 0.989 2890 measured reflections 2316 independent reflections 2025 reflections with I > 2σ(I) R int = 0.010 2 standard reflections frequency: 60 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.097 S = 1.11 2316 reflections 184 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1996 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809015785/ci2789sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015785/ci2789Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H15NO4Z = 2
Mr = 273.28F(000) = 288
Triclinic, P1Dx = 1.375 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.5616 (7) ÅCell parameters from 25 reflections
b = 8.9033 (8) Åθ = 2–25°
c = 10.8091 (11) ŵ = 0.10 mm1
α = 72.764 (11)°T = 293 K
β = 80.486 (12)°Block, colourless
γ = 72.369 (11)°0.18 × 0.15 × 0.11 mm
V = 660.09 (11) Å3
Nonius MACH-3 diffractometer2025 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.010
graphiteθmax = 25.0°, θmin = 2.5°
ω–2θ scansh = −1→8
Absorption correction: ψ scan (North et al., 1968)k = −10→10
Tmin = 0.982, Tmax = 0.989l = −12→12
2890 measured reflections2 standard reflections every 60 min
2316 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0454P)2 + 0.1839P] where P = (Fo2 + 2Fc2)/3
2316 reflections(Δ/σ)max = 0.001
184 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.29809 (15)0.41843 (13)0.00498 (10)0.0446 (3)
O2−0.04087 (14)0.29519 (13)0.08496 (10)0.0421 (3)
H2−0.11390.38460.05810.063*
O3−0.02584 (16)0.06248 (14)0.30007 (11)0.0499 (3)
H3−0.07240.08520.23130.075*
N10.29935 (17)0.38335 (15)0.28995 (12)0.0388 (3)
O4−0.19177 (16)0.40313 (16)0.45054 (11)0.0538 (3)
C80.2679 (2)0.30815 (17)0.09849 (13)0.0353 (3)
C40.2670 (2)0.26334 (19)0.41090 (14)0.0403 (3)
H4A0.24450.31210.48320.048*
H4B0.37680.17120.42520.048*
C100.3067 (2)0.04870 (17)0.24458 (14)0.0372 (3)
C70.07412 (19)0.30768 (16)0.17048 (13)0.0322 (3)
C50.0984 (2)0.20371 (18)0.40485 (13)0.0375 (3)
H50.07300.12290.48470.045*
C60.1144 (2)0.14491 (16)0.28236 (13)0.0348 (3)
C90.3957 (2)0.14516 (17)0.14346 (14)0.0372 (3)
C1−0.0622 (2)0.35556 (19)0.37706 (14)0.0383 (3)
C30.1375 (2)0.52059 (18)0.25385 (15)0.0406 (3)
H3A0.16610.59590.17280.049*
H3B0.09690.57880.32090.049*
C2−0.0144 (2)0.44610 (17)0.23864 (13)0.0362 (3)
H2A−0.12200.52750.19700.043*
C140.5784 (2)0.0851 (2)0.09741 (16)0.0486 (4)
H140.63750.15030.03010.058*
C110.3986 (2)−0.11196 (19)0.30063 (17)0.0496 (4)
H110.3394−0.17770.36740.059*
C120.5804 (3)−0.1720 (2)0.25488 (18)0.0565 (5)
H120.6442−0.27940.29170.068*
C130.6699 (2)−0.0751 (2)0.15496 (19)0.0572 (5)
H130.7927−0.11830.12630.069*
C180.4702 (3)0.4293 (3)0.2839 (2)0.0624 (5)
H18A0.48810.50360.20100.094*
H18B0.57370.33340.29490.094*
H18C0.46150.48110.35170.094*
U11U22U33U12U13U23
O10.0438 (6)0.0456 (6)0.0332 (5)−0.0098 (5)0.0005 (4)0.0021 (5)
O20.0419 (6)0.0433 (6)0.0416 (6)−0.0060 (5)−0.0146 (5)−0.0116 (5)
O30.0522 (7)0.0488 (6)0.0518 (7)−0.0269 (5)−0.0081 (5)−0.0022 (5)
N10.0360 (7)0.0438 (7)0.0393 (7)−0.0155 (5)0.0001 (5)−0.0116 (5)
O40.0413 (6)0.0706 (8)0.0475 (7)−0.0118 (6)0.0104 (5)−0.0234 (6)
C80.0365 (8)0.0379 (7)0.0285 (7)−0.0084 (6)−0.0037 (6)−0.0053 (6)
C40.0413 (8)0.0455 (8)0.0329 (7)−0.0085 (6)−0.0075 (6)−0.0095 (6)
C100.0422 (8)0.0343 (7)0.0341 (7)−0.0068 (6)−0.0073 (6)−0.0090 (6)
C70.0320 (7)0.0335 (7)0.0289 (7)−0.0067 (6)−0.0057 (5)−0.0053 (6)
C50.0396 (8)0.0413 (8)0.0268 (7)−0.0130 (6)0.0003 (6)−0.0013 (6)
C60.0369 (8)0.0322 (7)0.0338 (7)−0.0120 (6)−0.0039 (6)−0.0030 (6)
C90.0378 (8)0.0387 (8)0.0326 (7)−0.0050 (6)−0.0052 (6)−0.0101 (6)
C10.0350 (8)0.0468 (8)0.0360 (8)−0.0141 (6)0.0002 (6)−0.0135 (6)
C30.0491 (9)0.0361 (8)0.0370 (8)−0.0128 (7)−0.0008 (6)−0.0100 (6)
C20.0349 (7)0.0354 (7)0.0339 (7)−0.0028 (6)−0.0053 (6)−0.0080 (6)
C140.0396 (8)0.0557 (10)0.0453 (9)−0.0037 (7)−0.0015 (7)−0.0160 (8)
C110.0600 (10)0.0342 (8)0.0482 (9)−0.0044 (7)−0.0111 (8)−0.0064 (7)
C120.0617 (11)0.0404 (9)0.0592 (11)0.0085 (8)−0.0191 (9)−0.0161 (8)
C130.0442 (9)0.0592 (11)0.0625 (11)0.0096 (8)−0.0102 (8)−0.0286 (9)
C180.0456 (10)0.0723 (12)0.0787 (13)−0.0281 (9)0.0013 (9)−0.0244 (10)
O1—C81.2285 (17)C5—C11.509 (2)
O2—C71.4171 (16)C5—C61.537 (2)
O2—H20.82C5—H50.98
O3—C61.4219 (17)C9—C141.387 (2)
O3—H30.82C1—C21.517 (2)
N1—C31.453 (2)C3—C21.541 (2)
N1—C181.455 (2)C3—H3A0.97
N1—C41.4613 (19)C3—H3B0.97
O4—C11.2088 (18)C2—H2A0.98
C8—C91.471 (2)C14—C131.385 (3)
C8—C71.5419 (19)C14—H140.93
C4—C51.539 (2)C11—C121.381 (3)
C4—H4A0.97C11—H110.93
C4—H4B0.97C12—C131.388 (3)
C10—C111.386 (2)C12—H120.93
C10—C91.391 (2)C13—H130.93
C10—C61.507 (2)C18—H18A0.96
C7—C21.5443 (19)C18—H18B0.96
C7—C61.5720 (18)C18—H18C0.96
C7—O2—H2109.5C14—C9—C8128.62 (14)
C6—O3—H3109.5C10—C9—C8109.95 (13)
C3—N1—C18114.32 (13)O4—C1—C5128.54 (14)
C3—N1—C4113.97 (12)O4—C1—C2126.94 (14)
C18—N1—C4112.86 (13)C5—C1—C2104.23 (11)
O1—C8—C9126.53 (13)N1—C3—C2105.67 (11)
O1—C8—C7124.00 (12)N1—C3—H3A110.6
C9—C8—C7108.44 (12)C2—C3—H3A110.6
N1—C4—C5110.50 (11)N1—C3—H3B110.6
N1—C4—H4A109.6C2—C3—H3B110.6
C5—C4—H4A109.6H3A—C3—H3B108.7
N1—C4—H4B109.6C1—C2—C3103.05 (11)
C5—C4—H4B109.6C1—C2—C7103.33 (11)
H4A—C4—H4B108.1C3—C2—C7109.41 (11)
C11—C10—C9120.35 (15)C1—C2—H2A113.4
C11—C10—C6128.39 (14)C3—C2—H2A113.4
C9—C10—C6111.20 (12)C7—C2—H2A113.4
O2—C7—C8108.50 (11)C13—C14—C9117.82 (16)
O2—C7—C2114.39 (11)C13—C14—H14121.1
C8—C7—C2115.40 (12)C9—C14—H14121.1
O2—C7—C6108.69 (11)C12—C11—C10118.30 (16)
C8—C7—C6103.21 (11)C12—C11—H11120.8
C2—C7—C6105.84 (11)C10—C11—H11120.8
C1—C5—C6100.91 (11)C11—C12—C13121.32 (15)
C1—C5—C4105.49 (12)C11—C12—H12119.3
C6—C5—C4112.08 (11)C13—C12—H12119.3
C1—C5—H5112.5C14—C13—C12120.77 (16)
C6—C5—H5112.5C14—C13—H13119.6
C4—C5—H5112.5C12—C13—H13119.6
O3—C6—C10114.30 (12)N1—C18—H18A109.5
O3—C6—C5106.98 (11)N1—C18—H18B109.5
C10—C6—C5114.94 (12)H18A—C18—H18B109.5
O3—C6—C7111.58 (11)N1—C18—H18C109.5
C10—C6—C7104.97 (11)H18A—C18—H18C109.5
C5—C6—C7103.62 (11)H18B—C18—H18C109.5
C14—C9—C10121.43 (14)
C3—N1—C4—C554.45 (16)C6—C10—C9—C14176.26 (14)
C18—N1—C4—C5−172.98 (13)C11—C10—C9—C8178.38 (14)
O1—C8—C7—O266.57 (17)C6—C10—C9—C8−4.31 (17)
C9—C8—C7—O2−102.49 (12)O1—C8—C9—C144.9 (3)
O1—C8—C7—C2−63.28 (18)C7—C8—C9—C14173.60 (15)
C9—C8—C7—C2127.66 (12)O1—C8—C9—C10−174.49 (14)
O1—C8—C7—C6−178.24 (13)C7—C8—C9—C10−5.78 (16)
C9—C8—C7—C612.70 (14)C6—C5—C1—O4138.05 (16)
N1—C4—C5—C1−56.97 (15)C4—C5—C1—O4−105.16 (17)
N1—C4—C5—C651.96 (16)C6—C5—C1—C2−47.81 (13)
C11—C10—C6—O3−48.1 (2)C4—C5—C1—C268.98 (13)
C9—C10—C6—O3134.84 (13)C18—N1—C3—C2168.31 (13)
C11—C10—C6—C576.15 (19)C4—N1—C3—C2−59.82 (15)
C9—C10—C6—C5−100.88 (14)O4—C1—C2—C398.33 (17)
C11—C10—C6—C7−170.70 (15)C5—C1—C2—C3−75.95 (13)
C9—C10—C6—C712.27 (15)O4—C1—C2—C7−147.76 (15)
C1—C5—C6—O3−80.03 (13)C5—C1—C2—C737.97 (14)
C4—C5—C6—O3168.14 (11)N1—C3—C2—C169.03 (14)
C1—C5—C6—C10151.91 (12)N1—C3—C2—C7−40.39 (14)
C4—C5—C6—C1040.09 (16)O2—C7—C2—C1106.41 (13)
C1—C5—C6—C737.97 (13)C8—C7—C2—C1−126.65 (12)
C4—C5—C6—C7−73.85 (14)C6—C7—C2—C1−13.22 (14)
O2—C7—C6—O3−23.90 (15)O2—C7—C2—C3−144.35 (12)
C8—C7—C6—O3−138.96 (12)C8—C7—C2—C3−17.42 (15)
C2—C7—C6—O399.41 (13)C6—C7—C2—C396.02 (13)
O2—C7—C6—C10100.42 (12)C10—C9—C14—C130.3 (2)
C8—C7—C6—C10−14.64 (14)C8—C9—C14—C13−178.97 (15)
C2—C7—C6—C10−136.28 (11)C9—C10—C11—C121.0 (2)
O2—C7—C6—C5−138.66 (11)C6—C10—C11—C12−175.81 (15)
C8—C7—C6—C5106.28 (12)C10—C11—C12—C13−0.3 (3)
C2—C7—C6—C5−15.36 (14)C9—C14—C13—C120.4 (3)
C11—C10—C9—C14−1.1 (2)C11—C12—C13—C14−0.4 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3···O20.822.112.6080 (15)119
O2—H2···O1i0.821.902.7168 (15)175
C2—H2A···O1i0.982.593.3778 (18)137
C18—H18A···O1ii0.962.573.432 (2)149
C5—H5···O3iii0.982.463.4381 (18)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O20.822.112.6080 (15)119
O2—H2⋯O1i0.821.902.7168 (15)175
C2—H2A⋯O1i0.982.593.3778 (18)137
C18—H18A⋯O1ii0.962.573.432 (2)149
C5—H5⋯O3iii0.982.463.4381 (18)173

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A diastereoselective synthesis of 2,4-disubstituted piperidines: scaffolds for drug discovery.

Authors:  P S Watson; B Jiang; B Scott
Journal:  Org Lett       Date:  2000-11-16       Impact factor: 6.005

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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