| Literature DB >> 21583060 |
Weijun Zhu, Yan Xiang, Songlei Zhu.
Abstract
In the mol-ecule of the title compound, C(25)H(16)N(4), the pyridine rings are oriented at a dihedral angle of 0.92 (3)°, while the dihedral angle between the benzene ring and the adjacent pyridine ring is 56.51 (3)°. In the crystal structure, inter-molecular N-H⋯N hydrogen bonds link the mol-ecules into centrosymmetric dimers, forming R(2) (2)(16) ring motifs. π-π contacts between the pyridine ring and the indole ring system and between the pyridine rings [centroid-centroid distances = 3.923 (2) and 3.724 (2) Å] may further stabilize the structure. Two weak C-H⋯π inter-actions are also present.Entities:
Year: 2009 PMID: 21583060 PMCID: PMC2969709 DOI: 10.1107/S1600536809016195
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C25H16N4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point = 567–568 K |
| Mo | |
| Cell parameters from 3008 reflections | |
| θ = 3.1–25.3° | |
| α = 73.121 (13)° | µ = 0.08 mm−1 |
| β = 86.008 (16)° | |
| γ = 63.853 (10)° | Block, yellow |
| 0.55 × 0.35 × 0.30 mm |
| Rigaku Mercury diffractometer | 3349 independent reflections |
| Radiation source: fine-focus sealed tube | 2614 reflections with |
| graphite | |
| Detector resolution: 7.31 pixels mm-1 | θmax = 25.3°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 8987 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3349 reflections | (Δ/σ)max < 0.001 |
| 263 parameters | Δρmax = 0.16 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| N1 | 0.94201 (16) | 0.20772 (17) | 0.54741 (13) | 0.0355 (4) | |
| N2 | 1.20413 (18) | 0.3774 (2) | 0.44026 (14) | 0.0455 (4) | |
| N3 | 0.5855 (2) | 0.1895 (2) | 0.28547 (16) | 0.0606 (5) | |
| N4 | 0.64100 (17) | −0.04598 (18) | 0.69177 (14) | 0.0422 (4) | |
| H4 | 0.5936 | −0.1043 | 0.7025 | 0.051* | |
| C1 | 1.01436 (19) | 0.2799 (2) | 0.46717 (16) | 0.0347 (4) | |
| C2 | 0.98275 (19) | 0.3310 (2) | 0.33960 (16) | 0.0371 (4) | |
| H2 | 1.0382 | 0.3776 | 0.2873 | 0.045* | |
| C3 | 0.86846 (19) | 0.3126 (2) | 0.28960 (16) | 0.0353 (4) | |
| C4 | 0.79281 (19) | 0.2362 (2) | 0.37308 (16) | 0.0348 (4) | |
| C5 | 0.83308 (19) | 0.1829 (2) | 0.50305 (16) | 0.0334 (4) | |
| C6 | 1.13427 (19) | 0.3032 (2) | 0.52184 (16) | 0.0354 (4) | |
| C7 | 1.1727 (2) | 0.2494 (2) | 0.64913 (18) | 0.0449 (5) | |
| H7 | 1.1226 | 0.1981 | 0.7039 | 0.054* | |
| C8 | 1.2862 (2) | 0.2731 (3) | 0.6929 (2) | 0.0519 (5) | |
| H8 | 1.3135 | 0.2383 | 0.7779 | 0.062* | |
| C9 | 1.3586 (2) | 0.3482 (2) | 0.6104 (2) | 0.0494 (5) | |
| H9 | 1.4361 | 0.3648 | 0.6378 | 0.059* | |
| C10 | 1.3136 (2) | 0.3981 (3) | 0.4861 (2) | 0.0521 (5) | |
| H10 | 1.3625 | 0.4497 | 0.4302 | 0.063* | |
| C11 | 0.8284 (2) | 0.3777 (2) | 0.15322 (16) | 0.0379 (4) | |
| C12 | 0.9407 (2) | 0.3356 (2) | 0.07066 (17) | 0.0445 (5) | |
| H12 | 1.0400 | 0.2617 | 0.1010 | 0.053* | |
| C13 | 0.9065 (3) | 0.4026 (3) | −0.05660 (18) | 0.0529 (6) | |
| H13 | 0.9823 | 0.3725 | −0.1114 | 0.063* | |
| C14 | 0.7602 (3) | 0.5140 (3) | −0.10229 (19) | 0.0555 (6) | |
| H14 | 0.7376 | 0.5599 | −0.1878 | 0.067* | |
| C15 | 0.6484 (3) | 0.5570 (3) | −0.02151 (19) | 0.0532 (6) | |
| H15 | 0.5498 | 0.6323 | −0.0525 | 0.064* | |
| C16 | 0.6809 (2) | 0.4891 (2) | 0.10587 (18) | 0.0460 (5) | |
| H16 | 0.6039 | 0.5181 | 0.1600 | 0.055* | |
| C17 | 0.6772 (2) | 0.2108 (2) | 0.32443 (17) | 0.0423 (5) | |
| C18 | 0.7603 (2) | 0.1025 (2) | 0.59690 (16) | 0.0352 (4) | |
| C19 | 0.6856 (2) | 0.0176 (2) | 0.58127 (17) | 0.0385 (4) | |
| H19 | 0.6682 | 0.0056 | 0.5054 | 0.046* | |
| C20 | 0.6833 (2) | −0.0028 (2) | 0.78422 (17) | 0.0380 (4) | |
| C21 | 0.6582 (2) | −0.0376 (2) | 0.90989 (18) | 0.0476 (5) | |
| H21 | 0.6081 | −0.1001 | 0.9444 | 0.057* | |
| C22 | 0.7105 (3) | 0.0240 (3) | 0.98141 (19) | 0.0568 (6) | |
| H22 | 0.6957 | 0.0029 | 1.0663 | 0.068* | |
| C23 | 0.7851 (3) | 0.1175 (3) | 0.92946 (19) | 0.0601 (6) | |
| H23 | 0.8188 | 0.1581 | 0.9803 | 0.072* | |
| C24 | 0.8104 (2) | 0.1515 (3) | 0.80452 (18) | 0.0507 (5) | |
| H24 | 0.8605 | 0.2143 | 0.7711 | 0.061* | |
| C25 | 0.7595 (2) | 0.0901 (2) | 0.72879 (16) | 0.0366 (4) |
| N1 | 0.0353 (8) | 0.0367 (9) | 0.0374 (8) | −0.0191 (7) | 0.0027 (7) | −0.0097 (7) |
| N2 | 0.0430 (9) | 0.0583 (11) | 0.0475 (9) | −0.0321 (8) | 0.0058 (8) | −0.0173 (8) |
| N3 | 0.0675 (12) | 0.0748 (13) | 0.0507 (10) | −0.0502 (11) | −0.0130 (9) | 0.0006 (9) |
| N4 | 0.0439 (9) | 0.0449 (9) | 0.0476 (9) | −0.0298 (8) | 0.0052 (7) | −0.0109 (7) |
| C1 | 0.0320 (9) | 0.0349 (10) | 0.0378 (10) | −0.0153 (8) | 0.0024 (8) | −0.0102 (8) |
| C2 | 0.0336 (9) | 0.0415 (11) | 0.0369 (10) | −0.0206 (8) | 0.0024 (8) | −0.0058 (8) |
| C3 | 0.0354 (10) | 0.0346 (10) | 0.0355 (10) | −0.0159 (8) | 0.0005 (8) | −0.0081 (8) |
| C4 | 0.0346 (9) | 0.0346 (10) | 0.0362 (10) | −0.0172 (8) | 0.0001 (8) | −0.0082 (8) |
| C5 | 0.0329 (9) | 0.0314 (9) | 0.0385 (10) | −0.0157 (8) | 0.0034 (8) | −0.0114 (8) |
| C6 | 0.0319 (9) | 0.0355 (10) | 0.0407 (10) | −0.0152 (8) | 0.0036 (8) | −0.0134 (8) |
| C7 | 0.0452 (11) | 0.0490 (12) | 0.0415 (11) | −0.0237 (10) | −0.0025 (9) | −0.0083 (9) |
| C8 | 0.0514 (12) | 0.0575 (13) | 0.0492 (12) | −0.0256 (11) | −0.0101 (10) | −0.0131 (10) |
| C9 | 0.0334 (10) | 0.0567 (13) | 0.0663 (14) | −0.0199 (10) | −0.0016 (10) | −0.0281 (11) |
| C10 | 0.0458 (12) | 0.0661 (14) | 0.0611 (13) | −0.0364 (11) | 0.0121 (10) | −0.0249 (11) |
| C11 | 0.0418 (10) | 0.0419 (11) | 0.0360 (10) | −0.0255 (9) | 0.0003 (8) | −0.0080 (8) |
| C12 | 0.0459 (11) | 0.0509 (12) | 0.0399 (11) | −0.0266 (10) | 0.0016 (9) | −0.0089 (9) |
| C13 | 0.0668 (14) | 0.0664 (15) | 0.0398 (11) | −0.0420 (13) | 0.0114 (10) | −0.0171 (10) |
| C14 | 0.0770 (16) | 0.0650 (15) | 0.0357 (11) | −0.0472 (13) | −0.0048 (11) | −0.0026 (10) |
| C15 | 0.0566 (13) | 0.0545 (13) | 0.0463 (12) | −0.0306 (11) | −0.0118 (11) | 0.0018 (10) |
| C16 | 0.0448 (11) | 0.0539 (12) | 0.0410 (10) | −0.0260 (10) | −0.0005 (9) | −0.0085 (9) |
| C17 | 0.0457 (11) | 0.0469 (12) | 0.0382 (10) | −0.0283 (10) | 0.0001 (9) | −0.0042 (9) |
| C18 | 0.0334 (9) | 0.0345 (10) | 0.0388 (10) | −0.0164 (8) | 0.0030 (8) | −0.0098 (8) |
| C19 | 0.0408 (10) | 0.0398 (11) | 0.0387 (10) | −0.0215 (9) | 0.0030 (8) | −0.0109 (8) |
| C20 | 0.0339 (10) | 0.0373 (10) | 0.0436 (11) | −0.0174 (8) | 0.0041 (8) | −0.0105 (8) |
| C21 | 0.0476 (12) | 0.0545 (13) | 0.0449 (11) | −0.0305 (10) | 0.0111 (9) | −0.0091 (10) |
| C22 | 0.0709 (15) | 0.0729 (15) | 0.0377 (11) | −0.0436 (13) | 0.0129 (10) | −0.0146 (11) |
| C23 | 0.0815 (16) | 0.0805 (16) | 0.0432 (12) | −0.0570 (14) | 0.0122 (11) | −0.0205 (11) |
| C24 | 0.0656 (14) | 0.0626 (13) | 0.0424 (11) | −0.0457 (12) | 0.0096 (10) | −0.0145 (10) |
| C25 | 0.0356 (10) | 0.0374 (10) | 0.0394 (10) | −0.0199 (8) | 0.0033 (8) | −0.0091 (8) |
| N1—C1 | 1.339 (2) | C11—C12 | 1.385 (3) |
| N1—C5 | 1.347 (2) | C11—C16 | 1.391 (3) |
| N2—C10 | 1.334 (2) | C12—C13 | 1.384 (3) |
| N2—C6 | 1.341 (2) | C12—H12 | 0.9300 |
| N3—C17 | 1.144 (2) | C13—C14 | 1.378 (3) |
| N4—C19 | 1.354 (2) | C13—H13 | 0.9300 |
| N4—C20 | 1.377 (2) | C14—C15 | 1.369 (3) |
| N4—H4 | 0.8600 | C14—H14 | 0.9300 |
| C1—C2 | 1.381 (2) | C15—C16 | 1.384 (3) |
| C1—C6 | 1.490 (2) | C15—H15 | 0.9300 |
| C2—C3 | 1.385 (2) | C16—H16 | 0.9300 |
| C2—H2 | 0.9300 | C18—C19 | 1.375 (2) |
| C3—C4 | 1.404 (2) | C18—C25 | 1.451 (2) |
| C3—C11 | 1.484 (2) | C19—H19 | 0.9300 |
| C4—C5 | 1.420 (2) | C20—C21 | 1.384 (3) |
| C4—C17 | 1.432 (2) | C20—C25 | 1.405 (2) |
| C5—C18 | 1.465 (2) | C21—C22 | 1.372 (3) |
| C6—C7 | 1.388 (2) | C21—H21 | 0.9300 |
| C7—C8 | 1.377 (3) | C22—C23 | 1.389 (3) |
| C7—H7 | 0.9300 | C22—H22 | 0.9300 |
| C8—C9 | 1.368 (3) | C23—C24 | 1.376 (3) |
| C8—H8 | 0.9300 | C23—H23 | 0.9300 |
| C9—C10 | 1.371 (3) | C24—C25 | 1.398 (3) |
| C9—H9 | 0.9300 | C24—H24 | 0.9300 |
| C10—H10 | 0.9300 | ||
| C1—N1—C5 | 119.18 (15) | C13—C12—H12 | 119.7 |
| C10—N2—C6 | 117.30 (17) | C11—C12—H12 | 119.7 |
| C19—N4—C20 | 109.41 (15) | C14—C13—C12 | 120.1 (2) |
| C19—N4—H4 | 125.3 | C14—C13—H13 | 119.9 |
| C20—N4—H4 | 125.3 | C12—C13—H13 | 119.9 |
| N1—C1—C2 | 123.09 (15) | C15—C14—C13 | 119.85 (19) |
| N1—C1—C6 | 116.67 (15) | C15—C14—H14 | 120.1 |
| C2—C1—C6 | 120.24 (16) | C13—C14—H14 | 120.1 |
| C1—C2—C3 | 119.94 (16) | C14—C15—C16 | 120.5 (2) |
| C1—C2—H2 | 120.0 | C14—C15—H15 | 119.8 |
| C3—C2—H2 | 120.0 | C16—C15—H15 | 119.8 |
| C2—C3—C4 | 117.25 (16) | C15—C16—C11 | 120.2 (2) |
| C2—C3—C11 | 119.47 (16) | C15—C16—H16 | 119.9 |
| C4—C3—C11 | 123.25 (15) | C11—C16—H16 | 119.9 |
| C3—C4—C5 | 120.12 (15) | N3—C17—C4 | 179.5 (2) |
| C3—C4—C17 | 118.82 (15) | C19—C18—C25 | 105.64 (15) |
| C5—C4—C17 | 121.05 (16) | C19—C18—C5 | 128.12 (16) |
| N1—C5—C4 | 120.37 (15) | C25—C18—C5 | 126.18 (15) |
| N1—C5—C18 | 115.71 (15) | N4—C19—C18 | 110.50 (16) |
| C4—C5—C18 | 123.91 (15) | N4—C19—H19 | 124.7 |
| N2—C6—C7 | 122.15 (16) | C18—C19—H19 | 124.7 |
| N2—C6—C1 | 115.83 (15) | N4—C20—C21 | 129.29 (17) |
| C7—C6—C1 | 122.01 (16) | N4—C20—C25 | 107.56 (15) |
| C8—C7—C6 | 118.82 (18) | C21—C20—C25 | 123.15 (17) |
| C8—C7—H7 | 120.6 | C22—C21—C20 | 117.15 (18) |
| C6—C7—H7 | 120.6 | C22—C21—H21 | 121.4 |
| C9—C8—C7 | 119.50 (19) | C20—C21—H21 | 121.4 |
| C9—C8—H8 | 120.2 | C21—C22—C23 | 121.23 (19) |
| C7—C8—H8 | 120.2 | C21—C22—H22 | 119.4 |
| C8—C9—C10 | 118.03 (18) | C23—C22—H22 | 119.4 |
| C8—C9—H9 | 121.0 | C24—C23—C22 | 121.5 (2) |
| C10—C9—H9 | 121.0 | C24—C23—H23 | 119.2 |
| N2—C10—C9 | 124.20 (19) | C22—C23—H23 | 119.2 |
| N2—C10—H10 | 117.9 | C23—C24—C25 | 118.88 (18) |
| C9—C10—H10 | 117.9 | C23—C24—H24 | 120.6 |
| C12—C11—C16 | 118.78 (17) | C25—C24—H24 | 120.6 |
| C12—C11—C3 | 119.99 (16) | C24—C25—C20 | 118.06 (17) |
| C16—C11—C3 | 121.11 (17) | C24—C25—C18 | 135.01 (17) |
| C13—C12—C11 | 120.51 (19) | C20—C25—C18 | 106.88 (15) |
| C5—N1—C1—C2 | 0.0 (3) | C16—C11—C12—C13 | −0.3 (3) |
| C5—N1—C1—C6 | −179.68 (15) | C3—C11—C12—C13 | −176.21 (17) |
| N1—C1—C2—C3 | 2.0 (3) | C11—C12—C13—C14 | 1.0 (3) |
| C6—C1—C2—C3 | −178.34 (16) | C12—C13—C14—C15 | −0.7 (3) |
| C1—C2—C3—C4 | −2.2 (3) | C13—C14—C15—C16 | −0.1 (3) |
| C1—C2—C3—C11 | 175.87 (17) | C14—C15—C16—C11 | 0.8 (3) |
| C2—C3—C4—C5 | 0.7 (3) | C12—C11—C16—C15 | −0.5 (3) |
| C11—C3—C4—C5 | −177.30 (16) | C3—C11—C16—C15 | 175.28 (17) |
| C2—C3—C4—C17 | −178.14 (16) | N1—C5—C18—C19 | −157.15 (17) |
| C11—C3—C4—C17 | 3.8 (3) | C4—C5—C18—C19 | 24.1 (3) |
| C1—N1—C5—C4 | −1.6 (2) | N1—C5—C18—C25 | 19.5 (3) |
| C1—N1—C5—C18 | 179.67 (15) | C4—C5—C18—C25 | −159.21 (17) |
| C3—C4—C5—N1 | 1.2 (3) | C20—N4—C19—C18 | 0.8 (2) |
| C17—C4—C5—N1 | −179.95 (17) | C25—C18—C19—N4 | −0.5 (2) |
| C3—C4—C5—C18 | 179.84 (16) | C5—C18—C19—N4 | 176.68 (17) |
| C17—C4—C5—C18 | −1.3 (3) | C19—N4—C20—C21 | 178.41 (19) |
| C10—N2—C6—C7 | 0.0 (3) | C19—N4—C20—C25 | −0.8 (2) |
| C10—N2—C6—C1 | −179.08 (16) | N4—C20—C21—C22 | −178.64 (19) |
| N1—C1—C6—N2 | −179.21 (15) | C25—C20—C21—C22 | 0.5 (3) |
| C2—C1—C6—N2 | 1.1 (3) | C20—C21—C22—C23 | 0.1 (3) |
| N1—C1—C6—C7 | 1.7 (3) | C21—C22—C23—C24 | −0.3 (4) |
| C2—C1—C6—C7 | −178.01 (17) | C22—C23—C24—C25 | 0.0 (4) |
| N2—C6—C7—C8 | 0.0 (3) | C23—C24—C25—C20 | 0.6 (3) |
| C1—C6—C7—C8 | 179.07 (17) | C23—C24—C25—C18 | 177.8 (2) |
| C6—C7—C8—C9 | −0.3 (3) | N4—C20—C25—C24 | 178.46 (16) |
| C7—C8—C9—C10 | 0.4 (3) | C21—C20—C25—C24 | −0.8 (3) |
| C6—N2—C10—C9 | 0.2 (3) | N4—C20—C25—C18 | 0.5 (2) |
| C8—C9—C10—N2 | −0.4 (3) | C21—C20—C25—C18 | −178.79 (17) |
| C2—C3—C11—C12 | 54.4 (2) | C19—C18—C25—C24 | −177.5 (2) |
| C4—C3—C11—C12 | −127.63 (19) | C5—C18—C25—C24 | 5.3 (3) |
| C2—C3—C11—C16 | −121.39 (19) | C19—C18—C25—C20 | 0.0 (2) |
| C4—C3—C11—C16 | 56.6 (3) | C5—C18—C25—C20 | −177.27 (16) |
| H··· | ||||
| N4—H4···N3i | 0.86 | 2.23 | 3.066 (2) | 164 |
| C12—H12···Cg5ii | 0.93 | 2.84 | 3.649 (3) | 146 |
| C23—H23···Cg4iii | 0.93 | 2.91 | 3.711 (3) | 145 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H4⋯N3i | 0.86 | 2.23 | 3.066 (2) | 164 |
| C12—H12⋯ | 0.93 | 2.84 | 3.649 (3) | 146 |
| C23—H23⋯ | 0.93 | 2.91 | 3.711 (3) | 145 |
Symmetry codes: (i) ; (ii) ; (iii) . Cg4 and Cg5 are the centroids of the C11–C16 and C20–C25 rings, respectively.