Literature DB >> 21583060

6-(1H-Indol-3-yl)-4-phenyl-2,2'-bi-pyridine-5-carbonitrile.

Weijun Zhu, Yan Xiang, Songlei Zhu.   

Abstract

In the mol-ecule of the title compound, C(25)H(16)N(4), the pyridine rings are oriented at a dihedral angle of 0.92 (3)°, while the dihedral angle between the benzene ring and the adjacent pyridine ring is 56.51 (3)°. In the crystal structure, inter-molecular N-H⋯N hydrogen bonds link the mol-ecules into centrosymmetric dimers, forming R(2) (2)(16) ring motifs. π-π contacts between the pyridine ring and the indole ring system and between the pyridine rings [centroid-centroid distances = 3.923 (2) and 3.724 (2) Å] may further stabilize the structure. Two weak C-H⋯π inter-actions are also present.

Entities:  

Year:  2009        PMID: 21583060      PMCID: PMC2969709          DOI: 10.1107/S1600536809016195

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: da Silva et al. (2001 ▶); Joshi & Chand (1982 ▶); Namba et al. (2005 ▶). For a related structure, see: Zhu et al., (2008 ▶). For bond-length data, see: Allen et al. (1987 ▶). For ring-motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C25H16N4 M = 372.42 Triclinic, a = 9.7744 (16) Å b = 9.7927 (11) Å c = 11.233 (2) Å α = 73.121 (13)° β = 86.008 (16)° γ = 63.853 (10)° V = 921.5 (3) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 291 K 0.55 × 0.35 × 0.30 mm

Data collection

Rigaku Mercury diffractometer Absorption correction: multi-scan (ABSCOR; Jacobson, 1998 ▶) T min = 0.966, T max = 0.976 8987 measured reflections 3349 independent reflections 2614 reflections with I > 2/s(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.126 S = 1.12 3349 reflections 263 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2001 ▶); cell refinement: CrystalClear; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809016195/hk2679sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809016195/hk2679Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H16N4Z = 2
Mr = 372.42F(000) = 388
Triclinic, P1Dx = 1.342 Mg m3
Hall symbol: -P 1Melting point = 567–568 K
a = 9.7744 (16) ÅMo Kα radiation, λ = 0.71070 Å
b = 9.7927 (11) ÅCell parameters from 3008 reflections
c = 11.233 (2) Åθ = 3.1–25.3°
α = 73.121 (13)°µ = 0.08 mm1
β = 86.008 (16)°T = 291 K
γ = 63.853 (10)°Block, yellow
V = 921.5 (3) Å30.55 × 0.35 × 0.30 mm
Rigaku Mercury diffractometer3349 independent reflections
Radiation source: fine-focus sealed tube2614 reflections with I > 2/s(I)
graphiteRint = 0.027
Detector resolution: 7.31 pixels mm-1θmax = 25.3°, θmin = 3.1°
ω scansh = −11→11
Absorption correction: multi-scan (ABSCOR; Jacobson, 1998)k = −10→11
Tmin = 0.966, Tmax = 0.976l = −13→13
8987 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.0538P)2 + 0.1499P] where P = (Fo2 + 2Fc2)/3
3349 reflections(Δ/σ)max < 0.001
263 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.94201 (16)0.20772 (17)0.54741 (13)0.0355 (4)
N21.20413 (18)0.3774 (2)0.44026 (14)0.0455 (4)
N30.5855 (2)0.1895 (2)0.28547 (16)0.0606 (5)
N40.64100 (17)−0.04598 (18)0.69177 (14)0.0422 (4)
H40.5936−0.10430.70250.051*
C11.01436 (19)0.2799 (2)0.46717 (16)0.0347 (4)
C20.98275 (19)0.3310 (2)0.33960 (16)0.0371 (4)
H21.03820.37760.28730.045*
C30.86846 (19)0.3126 (2)0.28960 (16)0.0353 (4)
C40.79281 (19)0.2362 (2)0.37308 (16)0.0348 (4)
C50.83308 (19)0.1829 (2)0.50305 (16)0.0334 (4)
C61.13427 (19)0.3032 (2)0.52184 (16)0.0354 (4)
C71.1727 (2)0.2494 (2)0.64913 (18)0.0449 (5)
H71.12260.19810.70390.054*
C81.2862 (2)0.2731 (3)0.6929 (2)0.0519 (5)
H81.31350.23830.77790.062*
C91.3586 (2)0.3482 (2)0.6104 (2)0.0494 (5)
H91.43610.36480.63780.059*
C101.3136 (2)0.3981 (3)0.4861 (2)0.0521 (5)
H101.36250.44970.43020.063*
C110.8284 (2)0.3777 (2)0.15322 (16)0.0379 (4)
C120.9407 (2)0.3356 (2)0.07066 (17)0.0445 (5)
H121.04000.26170.10100.053*
C130.9065 (3)0.4026 (3)−0.05660 (18)0.0529 (6)
H130.98230.3725−0.11140.063*
C140.7602 (3)0.5140 (3)−0.10229 (19)0.0555 (6)
H140.73760.5599−0.18780.067*
C150.6484 (3)0.5570 (3)−0.02151 (19)0.0532 (6)
H150.54980.6323−0.05250.064*
C160.6809 (2)0.4891 (2)0.10587 (18)0.0460 (5)
H160.60390.51810.16000.055*
C170.6772 (2)0.2108 (2)0.32443 (17)0.0423 (5)
C180.7603 (2)0.1025 (2)0.59690 (16)0.0352 (4)
C190.6856 (2)0.0176 (2)0.58127 (17)0.0385 (4)
H190.66820.00560.50540.046*
C200.6833 (2)−0.0028 (2)0.78422 (17)0.0380 (4)
C210.6582 (2)−0.0376 (2)0.90989 (18)0.0476 (5)
H210.6081−0.10010.94440.057*
C220.7105 (3)0.0240 (3)0.98141 (19)0.0568 (6)
H220.69570.00291.06630.068*
C230.7851 (3)0.1175 (3)0.92946 (19)0.0601 (6)
H230.81880.15810.98030.072*
C240.8104 (2)0.1515 (3)0.80452 (18)0.0507 (5)
H240.86050.21430.77110.061*
C250.7595 (2)0.0901 (2)0.72879 (16)0.0366 (4)
U11U22U33U12U13U23
N10.0353 (8)0.0367 (9)0.0374 (8)−0.0191 (7)0.0027 (7)−0.0097 (7)
N20.0430 (9)0.0583 (11)0.0475 (9)−0.0321 (8)0.0058 (8)−0.0173 (8)
N30.0675 (12)0.0748 (13)0.0507 (10)−0.0502 (11)−0.0130 (9)0.0006 (9)
N40.0439 (9)0.0449 (9)0.0476 (9)−0.0298 (8)0.0052 (7)−0.0109 (7)
C10.0320 (9)0.0349 (10)0.0378 (10)−0.0153 (8)0.0024 (8)−0.0102 (8)
C20.0336 (9)0.0415 (11)0.0369 (10)−0.0206 (8)0.0024 (8)−0.0058 (8)
C30.0354 (10)0.0346 (10)0.0355 (10)−0.0159 (8)0.0005 (8)−0.0081 (8)
C40.0346 (9)0.0346 (10)0.0362 (10)−0.0172 (8)0.0001 (8)−0.0082 (8)
C50.0329 (9)0.0314 (9)0.0385 (10)−0.0157 (8)0.0034 (8)−0.0114 (8)
C60.0319 (9)0.0355 (10)0.0407 (10)−0.0152 (8)0.0036 (8)−0.0134 (8)
C70.0452 (11)0.0490 (12)0.0415 (11)−0.0237 (10)−0.0025 (9)−0.0083 (9)
C80.0514 (12)0.0575 (13)0.0492 (12)−0.0256 (11)−0.0101 (10)−0.0131 (10)
C90.0334 (10)0.0567 (13)0.0663 (14)−0.0199 (10)−0.0016 (10)−0.0281 (11)
C100.0458 (12)0.0661 (14)0.0611 (13)−0.0364 (11)0.0121 (10)−0.0249 (11)
C110.0418 (10)0.0419 (11)0.0360 (10)−0.0255 (9)0.0003 (8)−0.0080 (8)
C120.0459 (11)0.0509 (12)0.0399 (11)−0.0266 (10)0.0016 (9)−0.0089 (9)
C130.0668 (14)0.0664 (15)0.0398 (11)−0.0420 (13)0.0114 (10)−0.0171 (10)
C140.0770 (16)0.0650 (15)0.0357 (11)−0.0472 (13)−0.0048 (11)−0.0026 (10)
C150.0566 (13)0.0545 (13)0.0463 (12)−0.0306 (11)−0.0118 (11)0.0018 (10)
C160.0448 (11)0.0539 (12)0.0410 (10)−0.0260 (10)−0.0005 (9)−0.0085 (9)
C170.0457 (11)0.0469 (12)0.0382 (10)−0.0283 (10)0.0001 (9)−0.0042 (9)
C180.0334 (9)0.0345 (10)0.0388 (10)−0.0164 (8)0.0030 (8)−0.0098 (8)
C190.0408 (10)0.0398 (11)0.0387 (10)−0.0215 (9)0.0030 (8)−0.0109 (8)
C200.0339 (10)0.0373 (10)0.0436 (11)−0.0174 (8)0.0041 (8)−0.0105 (8)
C210.0476 (12)0.0545 (13)0.0449 (11)−0.0305 (10)0.0111 (9)−0.0091 (10)
C220.0709 (15)0.0729 (15)0.0377 (11)−0.0436 (13)0.0129 (10)−0.0146 (11)
C230.0815 (16)0.0805 (16)0.0432 (12)−0.0570 (14)0.0122 (11)−0.0205 (11)
C240.0656 (14)0.0626 (13)0.0424 (11)−0.0457 (12)0.0096 (10)−0.0145 (10)
C250.0356 (10)0.0374 (10)0.0394 (10)−0.0199 (8)0.0033 (8)−0.0091 (8)
N1—C11.339 (2)C11—C121.385 (3)
N1—C51.347 (2)C11—C161.391 (3)
N2—C101.334 (2)C12—C131.384 (3)
N2—C61.341 (2)C12—H120.9300
N3—C171.144 (2)C13—C141.378 (3)
N4—C191.354 (2)C13—H130.9300
N4—C201.377 (2)C14—C151.369 (3)
N4—H40.8600C14—H140.9300
C1—C21.381 (2)C15—C161.384 (3)
C1—C61.490 (2)C15—H150.9300
C2—C31.385 (2)C16—H160.9300
C2—H20.9300C18—C191.375 (2)
C3—C41.404 (2)C18—C251.451 (2)
C3—C111.484 (2)C19—H190.9300
C4—C51.420 (2)C20—C211.384 (3)
C4—C171.432 (2)C20—C251.405 (2)
C5—C181.465 (2)C21—C221.372 (3)
C6—C71.388 (2)C21—H210.9300
C7—C81.377 (3)C22—C231.389 (3)
C7—H70.9300C22—H220.9300
C8—C91.368 (3)C23—C241.376 (3)
C8—H80.9300C23—H230.9300
C9—C101.371 (3)C24—C251.398 (3)
C9—H90.9300C24—H240.9300
C10—H100.9300
C1—N1—C5119.18 (15)C13—C12—H12119.7
C10—N2—C6117.30 (17)C11—C12—H12119.7
C19—N4—C20109.41 (15)C14—C13—C12120.1 (2)
C19—N4—H4125.3C14—C13—H13119.9
C20—N4—H4125.3C12—C13—H13119.9
N1—C1—C2123.09 (15)C15—C14—C13119.85 (19)
N1—C1—C6116.67 (15)C15—C14—H14120.1
C2—C1—C6120.24 (16)C13—C14—H14120.1
C1—C2—C3119.94 (16)C14—C15—C16120.5 (2)
C1—C2—H2120.0C14—C15—H15119.8
C3—C2—H2120.0C16—C15—H15119.8
C2—C3—C4117.25 (16)C15—C16—C11120.2 (2)
C2—C3—C11119.47 (16)C15—C16—H16119.9
C4—C3—C11123.25 (15)C11—C16—H16119.9
C3—C4—C5120.12 (15)N3—C17—C4179.5 (2)
C3—C4—C17118.82 (15)C19—C18—C25105.64 (15)
C5—C4—C17121.05 (16)C19—C18—C5128.12 (16)
N1—C5—C4120.37 (15)C25—C18—C5126.18 (15)
N1—C5—C18115.71 (15)N4—C19—C18110.50 (16)
C4—C5—C18123.91 (15)N4—C19—H19124.7
N2—C6—C7122.15 (16)C18—C19—H19124.7
N2—C6—C1115.83 (15)N4—C20—C21129.29 (17)
C7—C6—C1122.01 (16)N4—C20—C25107.56 (15)
C8—C7—C6118.82 (18)C21—C20—C25123.15 (17)
C8—C7—H7120.6C22—C21—C20117.15 (18)
C6—C7—H7120.6C22—C21—H21121.4
C9—C8—C7119.50 (19)C20—C21—H21121.4
C9—C8—H8120.2C21—C22—C23121.23 (19)
C7—C8—H8120.2C21—C22—H22119.4
C8—C9—C10118.03 (18)C23—C22—H22119.4
C8—C9—H9121.0C24—C23—C22121.5 (2)
C10—C9—H9121.0C24—C23—H23119.2
N2—C10—C9124.20 (19)C22—C23—H23119.2
N2—C10—H10117.9C23—C24—C25118.88 (18)
C9—C10—H10117.9C23—C24—H24120.6
C12—C11—C16118.78 (17)C25—C24—H24120.6
C12—C11—C3119.99 (16)C24—C25—C20118.06 (17)
C16—C11—C3121.11 (17)C24—C25—C18135.01 (17)
C13—C12—C11120.51 (19)C20—C25—C18106.88 (15)
C5—N1—C1—C20.0 (3)C16—C11—C12—C13−0.3 (3)
C5—N1—C1—C6−179.68 (15)C3—C11—C12—C13−176.21 (17)
N1—C1—C2—C32.0 (3)C11—C12—C13—C141.0 (3)
C6—C1—C2—C3−178.34 (16)C12—C13—C14—C15−0.7 (3)
C1—C2—C3—C4−2.2 (3)C13—C14—C15—C16−0.1 (3)
C1—C2—C3—C11175.87 (17)C14—C15—C16—C110.8 (3)
C2—C3—C4—C50.7 (3)C12—C11—C16—C15−0.5 (3)
C11—C3—C4—C5−177.30 (16)C3—C11—C16—C15175.28 (17)
C2—C3—C4—C17−178.14 (16)N1—C5—C18—C19−157.15 (17)
C11—C3—C4—C173.8 (3)C4—C5—C18—C1924.1 (3)
C1—N1—C5—C4−1.6 (2)N1—C5—C18—C2519.5 (3)
C1—N1—C5—C18179.67 (15)C4—C5—C18—C25−159.21 (17)
C3—C4—C5—N11.2 (3)C20—N4—C19—C180.8 (2)
C17—C4—C5—N1−179.95 (17)C25—C18—C19—N4−0.5 (2)
C3—C4—C5—C18179.84 (16)C5—C18—C19—N4176.68 (17)
C17—C4—C5—C18−1.3 (3)C19—N4—C20—C21178.41 (19)
C10—N2—C6—C70.0 (3)C19—N4—C20—C25−0.8 (2)
C10—N2—C6—C1−179.08 (16)N4—C20—C21—C22−178.64 (19)
N1—C1—C6—N2−179.21 (15)C25—C20—C21—C220.5 (3)
C2—C1—C6—N21.1 (3)C20—C21—C22—C230.1 (3)
N1—C1—C6—C71.7 (3)C21—C22—C23—C24−0.3 (4)
C2—C1—C6—C7−178.01 (17)C22—C23—C24—C250.0 (4)
N2—C6—C7—C80.0 (3)C23—C24—C25—C200.6 (3)
C1—C6—C7—C8179.07 (17)C23—C24—C25—C18177.8 (2)
C6—C7—C8—C9−0.3 (3)N4—C20—C25—C24178.46 (16)
C7—C8—C9—C100.4 (3)C21—C20—C25—C24−0.8 (3)
C6—N2—C10—C90.2 (3)N4—C20—C25—C180.5 (2)
C8—C9—C10—N2−0.4 (3)C21—C20—C25—C18−178.79 (17)
C2—C3—C11—C1254.4 (2)C19—C18—C25—C24−177.5 (2)
C4—C3—C11—C12−127.63 (19)C5—C18—C25—C245.3 (3)
C2—C3—C11—C16−121.39 (19)C19—C18—C25—C200.0 (2)
C4—C3—C11—C1656.6 (3)C5—C18—C25—C20−177.27 (16)
D—H···AD—HH···AD···AD—H···A
N4—H4···N3i0.862.233.066 (2)164
C12—H12···Cg5ii0.932.843.649 (3)146
C23—H23···Cg4iii0.932.913.711 (3)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯N3i0.862.233.066 (2)164
C12—H12⋯Cg5ii0.932.843.649 (3)146
C23—H23⋯Cg4iii0.932.913.711 (3)145

Symmetry codes: (i) ; (ii) ; (iii) . Cg4 and Cg5 are the centroids of the C11–C16 and C20–C25 rings, respectively.

  4 in total

1.  A new method for translating the asymmetric Ni/Cr-mediated coupling reactions from stoichiometric to catalytic.

Authors:  Kosuke Namba; Sheng Cui; Jiashi Wang; Yoshito Kishi
Journal:  Org Lett       Date:  2005-11-24       Impact factor: 6.005

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Biologically active indole derivatives.

Authors:  K C Joshi; P Chand
Journal:  Pharmazie       Date:  1982-01       Impact factor: 1.267

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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