Literature DB >> 21583043

Diaqua-bis(tetra-zolo[1,5-a]pyridine-8-carboxyl-ato-κN,O)cobalt(II) dihydrate.

Min Xue1, Fu-Chen Liu.   

Abstract

In the title compound, [Co(C(6)H(3)N(4)O(2))(2)(H(2)O)(2)]·2H(2)O, the Co(II) atom is located on an inversion center in a slightly distorted octa-hedral environment formed by the O atoms of two water mol-ecules, and the N and O atoms of the chelating tetra-zolo[1,5-a]pyridine-8-carboxyl-ate anions. Hydrogen bonds of the O-H⋯O and O-H⋯N types result in a three-dimensional supra-molecular network.

Entities:  

Year:  2009        PMID: 21583043      PMCID: PMC2969667          DOI: 10.1107/S1600536809019187

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to coordination compounds and their synthesis by in situ reaction, see: Chen & Tong (2007 ▶); Liu et al. (2005 ▶); Li et al. (2007 ▶).

Experimental

Crystal data

[Co(C6H3N4O2)2(H2O)2]·2H2O M = 457.24 Orthorhombic, a = 19.041 (4) Å b = 11.694 (2) Å c = 7.5371 (15) Å V = 1678.3 (6) Å3 Z = 4 Mo Kα radiation μ = 1.09 mm−1 T = 293 K 0.5 × 0.5 × 0.4 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.530, T max = 0.667 13120 measured reflections 1482 independent reflections 1203 reflections with I > 2σ(I) R int = 0.081

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.090 S = 1.21 1482 reflections 148 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.54 e Å−3 Data collection: SCXmini Benchtop Crystallography System Software (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO (Rigaku, 1998 ▶); data reduction: PROCESS-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809019187/ng2582sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809019187/ng2582Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C6H3N4O2)2(H2O)2]·2H2ODx = 1.810 Mg m3
Mr = 457.24Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PnnaCell parameters from 11987 reflections
a = 19.041 (4) Åθ = 3.3–27.8°
b = 11.694 (2) ŵ = 1.09 mm1
c = 7.5371 (15) ÅT = 293 K
V = 1678.3 (6) Å3Block, red
Z = 40.5 × 0.5 × 0.4 mm
F(000) = 932
Rigaku SCXmini diffractometer1482 independent reflections
Radiation source: fine-focus sealed tube1203 reflections with I > 2σ(I)
graphiteRint = 0.081
ω scansθmax = 25.0°, θmin = 3.2°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −22→22
Tmin = 0.530, Tmax = 0.667k = −13→13
13120 measured reflectionsl = −8→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H atoms treated by a mixture of independent and constrained refinement
S = 1.21w = 1/[σ2(Fo2) + (0.0256P)2 + 2.1174P] where P = (Fo2 + 2Fc2)/3
1482 reflections(Δ/σ)max < 0.001
148 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.54 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.25000.00000.86713 (10)0.0185 (3)
O10.20211 (15)0.1011 (2)0.6721 (4)0.0258 (7)
O1W0.20777 (17)0.1069 (3)1.0644 (4)0.0282 (8)
H1WB0.187 (2)0.167 (2)1.037 (5)0.028 (14)*
H1WA0.234 (2)0.120 (4)1.151 (5)0.034 (16)*
O20.12294 (15)0.2126 (2)0.5359 (4)0.0310 (8)
N10.15291 (19)−0.0903 (3)0.8639 (4)0.0220 (8)
N20.1335 (2)−0.1860 (3)0.9493 (5)0.0307 (10)
N30.0650 (2)−0.2019 (3)0.9438 (5)0.0315 (10)
N40.03825 (19)−0.1111 (3)0.8530 (5)0.0236 (9)
C10.1390 (2)0.1307 (3)0.6326 (5)0.0220 (10)
C20.0793 (2)0.0595 (3)0.7064 (6)0.0199 (9)
C30.0093 (2)0.0832 (4)0.6782 (6)0.0251 (11)
H3A−0.00220.15000.61800.030*
C4−0.0468 (2)0.0108 (3)0.7364 (6)0.0276 (11)
H4A−0.09330.03180.71650.033*
C5−0.0318 (2)−0.0885 (4)0.8204 (6)0.0286 (11)
H5A−0.0670−0.13910.85470.034*
C60.0929 (2)−0.0430 (4)0.8022 (6)0.0209 (10)
O2W0.28936 (19)0.1261 (3)0.3682 (4)0.0363 (9)
H2WB0.259 (2)0.108 (4)0.444 (5)0.051 (19)*
H2WA0.312 (2)0.182 (3)0.408 (6)0.042 (16)*
U11U22U33U12U13U23
Co10.0154 (5)0.0195 (5)0.0206 (5)0.0011 (3)0.0000.000
O10.0205 (17)0.0295 (17)0.0274 (18)−0.0008 (13)0.0002 (13)0.0101 (14)
O1W0.029 (2)0.0236 (18)0.032 (2)0.0111 (14)−0.0028 (15)−0.0049 (14)
O20.0291 (19)0.0258 (18)0.038 (2)−0.0023 (14)−0.0044 (15)0.0131 (15)
N10.023 (2)0.0189 (18)0.024 (2)0.0013 (15)−0.0020 (15)0.0079 (15)
N20.033 (2)0.023 (2)0.036 (2)−0.0045 (17)−0.0012 (18)0.0059 (18)
N30.033 (2)0.027 (2)0.035 (2)−0.0027 (17)0.0033 (18)0.0082 (18)
N40.023 (2)0.0206 (19)0.027 (2)−0.0040 (16)−0.0012 (16)0.0039 (16)
C10.028 (3)0.019 (2)0.019 (2)0.0023 (19)−0.0032 (19)−0.0003 (18)
C20.022 (2)0.018 (2)0.020 (2)−0.0037 (18)−0.0049 (18)0.0002 (18)
C30.028 (3)0.023 (2)0.024 (3)0.0014 (19)−0.0023 (19)−0.0004 (19)
C40.019 (2)0.034 (3)0.029 (3)0.0030 (19)−0.0016 (19)−0.003 (2)
C50.022 (3)0.031 (3)0.033 (3)−0.008 (2)0.002 (2)−0.003 (2)
C60.019 (2)0.022 (2)0.021 (2)−0.0030 (18)−0.0032 (18)0.0008 (19)
O2W0.035 (2)0.042 (2)0.031 (2)−0.0088 (17)0.0054 (16)−0.0055 (16)
Co1—O12.095 (3)N3—N41.362 (5)
Co1—O1i2.095 (3)N4—C61.365 (5)
Co1—O1W2.102 (3)N4—C51.382 (6)
Co1—O1Wi2.102 (3)C1—C21.516 (6)
Co1—N12.129 (4)C2—C31.378 (6)
Co1—N1i2.129 (4)C2—C61.424 (6)
O1—C11.286 (5)C3—C41.432 (6)
O1W—H1WB0.825 (18)C3—H3A0.9300
O1W—H1WA0.842 (19)C4—C51.353 (6)
O2—C11.242 (5)C4—H4A0.9300
N1—N21.342 (5)C5—H5A0.9300
N1—C61.351 (5)O2W—H2WB0.835 (19)
N2—N31.318 (5)O2W—H2WA0.842 (19)
O1—Co1—O1i90.89 (16)N2—N3—N4106.0 (3)
O1—Co1—O1W89.66 (13)N3—N4—C6108.1 (4)
O1i—Co1—O1W176.49 (12)N3—N4—C5126.8 (4)
O1—Co1—O1Wi176.49 (12)C6—N4—C5125.1 (4)
O1i—Co1—O1Wi89.66 (13)O2—C1—O1125.0 (4)
O1W—Co1—O1Wi89.99 (18)O2—C1—C2117.0 (4)
O1—Co1—N183.91 (12)O1—C1—C2117.9 (4)
O1i—Co1—N195.17 (12)C3—C2—C6115.1 (4)
O1W—Co1—N188.33 (13)C3—C2—C1124.0 (4)
O1Wi—Co1—N192.58 (13)C6—C2—C1120.8 (4)
O1—Co1—N1i95.17 (12)C2—C3—C4123.8 (4)
O1i—Co1—N1i83.91 (12)C2—C3—H3A118.1
O1W—Co1—N1i92.58 (13)C4—C3—H3A118.1
O1Wi—Co1—N1i88.33 (13)C5—C4—C3119.6 (4)
N1—Co1—N1i178.70 (19)C5—C4—H4A120.2
C1—O1—Co1136.2 (3)C3—C4—H4A120.2
Co1—O1W—H1WB120 (3)C4—C5—N4116.8 (4)
Co1—O1W—H1WA115 (3)C4—C5—H5A121.6
H1WB—O1W—H1WA109 (2)N4—C5—H5A121.6
N2—N1—C6105.8 (3)N1—C6—N4108.0 (4)
N2—N1—Co1130.3 (3)N1—C6—C2132.4 (4)
C6—N1—Co1122.3 (3)N4—C6—C2119.6 (4)
N3—N2—N1112.1 (3)H2WB—O2W—H2WA107 (3)
O1i—Co1—O1—C1123.8 (4)O2—C1—C2—C3−2.7 (6)
O1W—Co1—O1—C1−59.7 (4)O1—C1—C2—C3178.3 (4)
O1Wi—Co1—O1—C125 (2)O2—C1—C2—C6173.1 (4)
N1—Co1—O1—C128.7 (4)O1—C1—C2—C6−5.9 (6)
N1i—Co1—O1—C1−152.2 (4)C6—C2—C3—C4−1.1 (6)
O1—Co1—N1—N2174.9 (4)C1—C2—C3—C4174.9 (4)
O1i—Co1—N1—N284.5 (4)C2—C3—C4—C5−1.7 (7)
O1W—Co1—N1—N2−95.3 (4)C3—C4—C5—N43.2 (6)
O1Wi—Co1—N1—N2−5.3 (4)N3—N4—C5—C4176.0 (4)
N1i—Co1—N1—N2129.7 (4)C6—N4—C5—C4−2.1 (7)
O1—Co1—N1—C6−21.2 (3)N2—N1—C6—N40.4 (5)
O1i—Co1—N1—C6−111.5 (3)Co1—N1—C6—N4−166.9 (3)
O1W—Co1—N1—C668.6 (3)N2—N1—C6—C2178.1 (5)
O1Wi—Co1—N1—C6158.6 (3)Co1—N1—C6—C210.8 (7)
N1i—Co1—N1—C6−66.4 (3)N3—N4—C6—N1−1.1 (5)
C6—N1—N2—N30.4 (5)C5—N4—C6—N1177.4 (4)
Co1—N1—N2—N3166.3 (3)N3—N4—C6—C2−179.1 (4)
N1—N2—N3—N4−1.1 (5)C5—N4—C6—C2−0.7 (6)
N2—N3—N4—C61.3 (4)C3—C2—C6—N1−175.3 (4)
N2—N3—N4—C5−177.1 (4)C1—C2—C6—N18.6 (7)
Co1—O1—C1—O2162.2 (3)C3—C2—C6—N42.2 (6)
Co1—O1—C1—C2−18.9 (6)C1—C2—C6—N4−173.9 (4)
D—H···AD—HH···AD···AD—H···A
O1W—H1WB···O2ii0.83 (2)1.95 (2)2.763 (4)168 (4)
O1W—H1WA···O2Wiii0.84 (2)1.94 (2)2.776 (5)170 (5)
O2W—H2WB···O10.84 (2)2.04 (3)2.845 (4)163 (4)
O2W—H2WA···N2iv0.84 (2)2.15 (2)2.981 (5)171 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WB⋯O2i0.825 (18)1.950 (19)2.763 (4)168 (4)
O1W—H1WA⋯O2Wii0.842 (19)1.943 (19)2.776 (5)170 (5)
O2W—H2WB⋯O10.835 (19)2.04 (3)2.845 (4)163 (4)
O2W—H2WA⋯N2iii0.842 (19)2.15 (2)2.981 (5)171 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A pcu-type metal-organic framework with spindle [Zn7(OH)8]6+ cluster as secondary building units.

Authors:  Jian-Rong Li; Ying Tao; Qun Yu; Xian-He Bu
Journal:  Chem Commun (Camb)       Date:  2007-02-06       Impact factor: 6.222

2.  Solvothermal in situ metal/ligand reactions: a new bridge between coordination chemistry and organic synthetic chemistry.

Authors:  Xiao-Ming Chen; Ming-Liang Tong
Journal:  Acc Chem Res       Date:  2007-02       Impact factor: 22.384

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Novel 3-D framework nickel(II) complex with azide, nicotinic acid, and nicotinate(1-) as coligands: hydrothermal synthesis, structure, and magnetic properties.

Authors:  Fu-Chen Liu; Yong-Fei Zeng; Jian-Rong Li; Xian-He Bu; Hong-Jie Zhang; Joan Ribas
Journal:  Inorg Chem       Date:  2005-10-17       Impact factor: 5.165

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  Diaqua-bis(tetra-zolo[1,5-a]pyridine-8-carboxyl-ato-κN,O)manganese(II) dihydrate.

Authors:  Jian-De Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-24
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.