Literature DB >> 21583034

trans-Dichloridobis(4-methoxy-aniline-κN)palladium(II).

Volodimir Bon1, Svitlana Orysyk, Vasyl Pekhnyo.   

Abstract

In the title compound, [pan class="Chemical">PdCl(2)(C(7)H(9)NO)(2)], the Pd atom is situated on a crystallographic centre of inversion. The coordination environment of the Pd atom shows a slightly distorted square-planar geometry. The crystal structure exhibits weak inter-molecular Pd⋯Cl inter-actions, with Pd⋯Cl distances of 3.6912 (6) Å. A chain-like arrangement of mol-ecules realized by inter-molecular N-H⋯Cl pan class="Chemical">hydrogen bonds is observed along [010].

Entities:  

Year:  2009        PMID: 21583034      PMCID: PMC2969670          DOI: 10.1107/S1600536809018509

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For catalytic activity of Pd complex compounds, see: Ojwach et al. (2007 ▶). For anti­tumoral properties of Pd compounds, see: Casas et al. (2008 ▶). For related structures, see: Bon et al. (2009 ▶); Pan et al. (2006 ▶).

Experimental

Crystal data

[pan class="Gene">PdCl2(pan class="CellLine">C7H9NO)2] M = 423.60 Monoclinic, a = 4.7333 (1) Å b = 6.0071 (1) Å c = 27.6918 (5) Å β = 94.806 (1)° V = 784.60 (3) Å3 Z = 2 Mo Kα radiation μ = 1.53 mm−1 T = 173 K 0.25 × 0.08 × 0.04 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: numerical (SADABS; Bruker, 2005 ▶) T min = 0.701, T max = 0.941 4837 measured reflections 1577 independent reflections 1326 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.049 S = 1.04 1577 reflections 106 parameters pan class="Disease">H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.39 e Å−3 Data collection: pan class="Gene">APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809018509/im2115sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018509/im2115Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdCl2(C7H9NO)2]F(000) = 424
Mr = 423.60Dx = 1.793 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2257 reflections
a = 4.7333 (1) Åθ = 3.0–26.4°
b = 6.0071 (1) ŵ = 1.53 mm1
c = 27.6918 (5) ÅT = 173 K
β = 94.806 (1)°Plate, yellow
V = 784.60 (3) Å30.25 × 0.08 × 0.04 mm
Z = 2
Bruker APEXII CCD diffractometer1577 independent reflections
Radiation source: fine-focus sealed tube1326 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 8.26 pixels mm-1θmax = 26.4°, θmin = 1.5°
φ and ω scansh = −2→5
Absorption correction: numerical (SADABS; Bruker, 2005)k = −7→7
Tmin = 0.701, Tmax = 0.941l = −34→34
4837 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.049H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0205P)2 + 0.3835P] where P = (Fo2 + 2Fc2)/3
1577 reflections(Δ/σ)max < 0.001
106 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.00000.00000.00000.01570 (9)
Cl1−0.30064 (12)−0.26378 (11)0.02745 (2)0.02254 (15)
N1−0.1173 (4)0.2075 (4)0.05318 (8)0.0188 (5)
H1A−0.162 (5)0.332 (5)0.0398 (9)0.019 (7)*
H1B−0.282 (6)0.151 (5)0.0615 (10)0.029 (8)*
O10.6985 (4)0.2939 (4)0.21008 (7)0.0347 (5)
C10.0967 (5)0.2336 (4)0.09336 (9)0.0191 (5)
C20.2570 (5)0.4248 (4)0.09767 (9)0.0202 (6)
H20.22590.54020.07440.024*
C30.4636 (5)0.4498 (4)0.13583 (9)0.0231 (6)
H30.57420.58180.13870.028*
C40.5079 (5)0.2813 (5)0.16982 (9)0.0251 (6)
C50.3517 (6)0.0864 (5)0.16452 (10)0.0290 (6)
H50.3861−0.03100.18720.035*
C60.1466 (6)0.0617 (4)0.12644 (10)0.0256 (6)
H60.0401−0.07220.12290.031*
C70.8612 (6)0.4926 (6)0.21595 (11)0.0395 (7)
H7A0.97140.51300.18790.059*
H7B0.99030.48170.24540.059*
H7C0.73400.61990.21860.059*
U11U22U33U12U13U23
Pd10.01623 (13)0.01298 (15)0.01751 (14)−0.00122 (12)−0.00092 (9)−0.00012 (13)
Cl10.0220 (3)0.0164 (3)0.0292 (3)−0.0035 (3)0.0023 (2)0.0032 (3)
N10.0196 (11)0.0148 (12)0.0217 (12)0.0004 (10)−0.0008 (9)0.0007 (10)
O10.0334 (10)0.0448 (14)0.0237 (10)0.0059 (10)−0.0100 (8)−0.0007 (10)
C10.0191 (12)0.0210 (14)0.0173 (12)0.0030 (11)0.0029 (10)−0.0047 (12)
C20.0245 (13)0.0187 (14)0.0177 (13)0.0003 (11)0.0040 (10)0.0011 (11)
C30.0221 (12)0.0239 (16)0.0230 (14)−0.0030 (11)0.0009 (10)−0.0037 (12)
C40.0222 (13)0.0359 (18)0.0171 (13)0.0067 (13)0.0000 (10)−0.0053 (13)
C50.0380 (16)0.0260 (15)0.0226 (15)0.0066 (13)−0.0005 (12)0.0049 (13)
C60.0329 (14)0.0191 (15)0.0245 (14)0.0004 (12)0.0013 (11)−0.0004 (12)
C70.0320 (15)0.055 (2)0.0303 (15)−0.0001 (17)−0.0054 (12)−0.0113 (17)
Pd1—N12.042 (2)C2—C31.387 (3)
Pd1—N1i2.042 (2)C2—H20.9500
Pd1—Cl12.3010 (6)C3—C41.387 (4)
Pd1—Cl1i2.3010 (6)C3—H30.9500
N1—C11.449 (3)C4—C51.386 (4)
N1—H1A0.85 (3)C5—C61.380 (4)
N1—H1B0.90 (3)C5—H50.9500
O1—C41.376 (3)C6—H60.9500
O1—C71.422 (4)C7—H7A0.9800
C1—C21.376 (4)C7—H7B0.9800
C1—C61.387 (4)C7—H7C0.9800
N1—Pd1—N1i180.00 (8)C2—C3—C4119.7 (2)
N1—Pd1—Cl188.23 (7)C2—C3—H3120.2
N1i—Pd1—Cl191.77 (7)C4—C3—H3120.2
N1—Pd1—Cl1i91.77 (7)O1—C4—C5116.1 (3)
N1i—Pd1—Cl1i88.23 (7)O1—C4—C3124.1 (3)
Cl1—Pd1—Cl1i180.0C5—C4—C3119.7 (2)
C1—N1—Pd1113.89 (15)C6—C5—C4120.4 (3)
C1—N1—H1A111.6 (18)C6—C5—H5119.8
Pd1—N1—H1A107.2 (17)C4—C5—H5119.8
C1—N1—H1B114.1 (17)C5—C6—C1119.6 (3)
Pd1—N1—H1B104.4 (18)C5—C6—H6120.2
H1A—N1—H1B105 (2)C1—C6—H6120.2
C4—O1—C7116.8 (2)O1—C7—H7A109.5
C2—C1—C6120.1 (2)O1—C7—H7B109.5
C2—C1—N1120.1 (2)H7A—C7—H7B109.5
C6—C1—N1119.7 (2)O1—C7—H7C109.5
C1—C2—C3120.3 (2)H7A—C7—H7C109.5
C1—C2—H2119.8H7B—C7—H7C109.5
C3—C2—H2119.8
Cl1—Pd1—N1—C1105.56 (18)C7—O1—C4—C3−1.1 (4)
Cl1i—Pd1—N1—C1−74.44 (18)C2—C3—C4—O1−177.0 (2)
Pd1—N1—C1—C2103.7 (2)C2—C3—C4—C52.0 (4)
Pd1—N1—C1—C6−73.9 (2)O1—C4—C5—C6177.2 (2)
C6—C1—C2—C3−1.9 (4)C3—C4—C5—C6−1.9 (4)
N1—C1—C2—C3−179.5 (2)C4—C5—C6—C1−0.1 (4)
C1—C2—C3—C4−0.2 (4)C2—C1—C6—C52.0 (4)
C7—O1—C4—C5179.8 (2)N1—C1—C6—C5179.6 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl1ii0.85 (3)2.53 (3)3.353 (2)162 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Cl1i0.85 (3)2.53 (3)3.353 (2)162 (2)

Symmetry code: (i) .

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