Literature DB >> 21582343

trans-Dichloridobis(2-methyl-aniline-κN)palladium(II).

V Bon1, A Dudko, S Orysyk, V Pekhnyo.   

Abstract

In the title compound, [PdCl(2)(C(7)H(9)N)(2)], the Pd atom is situated on an inversion centre and displays a distorted square-planar coordination environment. The crystal structure displays weak inter-molecular N-H⋯Cl hydrogen bonding.

Entities:  

Year:  2009        PMID: 21582343      PMCID: PMC2968883          DOI: 10.1107/S1600536809008472

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the cytostatic and anti­tumoral activity of Pd complexes with N-containing organic ligands, see: Casas et al. (2008 ▶); Curic et al. (1996 ▶). For related structures, see: Baldovino-Pantaleon et al. (2007 ▶); Navarro–Ranninger et al. (1987 ▶); Vogels et al. (1999 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[PdCl2(C7H9N)2] M = 391.60 Monoclinic, a = 12.1841 (3) Å b = 8.0653 (2) Å c = 7.5407 (2) Å β = 97.346 (2)° V = 734.93 (3) Å3 Z = 2 Mo Kα radiation μ = 1.61 mm−1 T = 173 K 0.17 × 0.16 × 0.04 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.777, T max = 0.932 8179 measured reflections 1502 independent reflections 1118 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.060 S = 1.03 1502 reflections 97 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.66 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809008472/rk2132sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809008472/rk2132Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdCl2(C7H9N)2]F(000) = 392
Mr = 391.60Dx = 1.770 Mg m3
Monoclinic, P21/cMelting point: 560 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 12.1841 (3) ÅCell parameters from 1337 reflections
b = 8.0653 (2) Åθ = 3.0–22.5°
c = 7.5407 (2) ŵ = 1.61 mm1
β = 97.346 (2)°T = 173 K
V = 734.93 (3) Å3Plate, yellow
Z = 20.17 × 0.16 × 0.04 mm
Bruker APEXII CCD diffractometer1502 independent reflections
Radiation source: Fine–focus sealed tube1118 reflections with I > 2σ(I)
GraphiteRint = 0.074
Detector resolution: 8.26 pixels mm-1θmax = 26.4°, θmin = 1.7°
φ and ω scansh = −15→15
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −10→10
Tmin = 0.777, Tmax = 0.932l = −9→9
8179 measured reflections
Refinement on F2Primary atom site location: Direct
Least-squares matrix: FullSecondary atom site location: Difmap
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: Geom
wR(F2) = 0.060H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0118P)2 + 0.6868P] where P = (Fo2 + 2Fc2)/3
1502 reflections(Δ/σ)max < 0.001
97 parametersΔρmax = 0.48 e Å3
2 restraintsΔρmin = −0.66 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.00000.50000.00000.01692 (12)
Cl10.06040 (8)0.77044 (11)0.02411 (13)0.0222 (2)
N10.1118 (3)0.4372 (4)0.2186 (5)0.0192 (8)
H1N0.130 (3)0.526 (4)0.276 (5)0.024 (12)*
H2N0.071 (3)0.386 (4)0.294 (5)0.025 (12)*
C10.2062 (3)0.3358 (5)0.1906 (5)0.0216 (9)
C20.3051 (4)0.4060 (6)0.1573 (6)0.0300 (11)
C30.3912 (3)0.2990 (6)0.1258 (6)0.0330 (11)
H30.45960.34460.10150.040*
C40.3790 (4)0.1308 (6)0.1291 (6)0.0390 (12)
H40.43870.06120.10730.047*
C50.2808 (4)0.0614 (6)0.1639 (6)0.0352 (12)
H50.2722−0.05560.16530.042*
C60.1949 (3)0.1643 (5)0.1967 (5)0.0271 (10)
H60.12750.11740.22380.032*
C70.3210 (4)0.5894 (6)0.1537 (7)0.0432 (14)
H7A0.27010.63730.05600.065*
H7B0.39740.61420.13500.065*
H7C0.30600.63700.26770.065*
U11U22U33U12U13U23
Pd10.0189 (2)0.0155 (2)0.0169 (2)0.0004 (2)0.00446 (15)−0.0002 (2)
Cl10.0272 (5)0.0174 (5)0.0222 (5)−0.0014 (4)0.0033 (4)0.0008 (4)
N10.0228 (18)0.0170 (17)0.019 (2)−0.0008 (14)0.0066 (16)−0.0040 (16)
C10.022 (2)0.025 (2)0.017 (2)0.0002 (17)0.0021 (18)0.0009 (17)
C20.029 (3)0.039 (3)0.022 (3)0.000 (2)0.004 (2)0.000 (2)
C30.022 (2)0.044 (3)0.033 (3)0.007 (2)0.004 (2)−0.004 (2)
C40.034 (3)0.047 (3)0.036 (3)0.014 (2)0.003 (2)−0.012 (2)
C50.041 (3)0.030 (2)0.033 (3)0.006 (2)0.000 (2)−0.005 (2)
C60.025 (2)0.034 (3)0.022 (3)0.0000 (19)0.0007 (19)0.0015 (19)
C70.031 (3)0.035 (3)0.063 (4)0.001 (2)0.002 (3)0.005 (3)
Pd1—N12.063 (3)C3—C41.365 (6)
Pd1—N1i2.063 (3)C3—H30.9500
Pd1—Cl1i2.3017 (9)C4—C51.376 (6)
Pd1—Cl12.3017 (9)C4—H40.9500
N1—C11.449 (5)C5—C61.382 (5)
N1—H1N0.85 (2)C5—H50.9500
N1—H2N0.90 (2)C6—H60.9500
C1—C21.383 (5)C7—H7A0.9800
C1—C61.392 (5)C7—H7B0.9800
C2—C31.402 (6)C7—H7C0.9800
C2—C71.492 (5)
N1—Pd1—N1i180.0C4—C3—C2121.5 (4)
N1—Pd1—Cl1i90.13 (10)C4—C3—H3119.2
N1i—Pd1—Cl1i89.87 (10)C2—C3—H3119.2
N1—Pd1—Cl189.88 (10)C3—C4—C5120.5 (4)
N1i—Pd1—Cl190.13 (10)C3—C4—H4119.8
Cl1i—Pd1—Cl1180.0C5—C4—H4119.8
C1—N1—Pd1118.6 (3)C4—C5—C6119.1 (4)
C1—N1—H1N113 (3)C4—C5—H5120.4
Pd1—N1—H1N108 (3)C6—C5—H5120.4
C1—N1—H2N110 (2)C5—C6—C1120.7 (4)
Pd1—N1—H2N105 (3)C5—C6—H6119.7
H1N—N1—H2N101 (4)C1—C6—H6119.7
C2—C1—C6120.3 (4)C2—C7—H7A109.5
C2—C1—N1121.5 (4)C2—C7—H7B109.5
C6—C1—N1118.2 (4)H7A—C7—H7B109.5
C1—C2—C3117.8 (4)C2—C7—H7C109.5
C1—C2—C7121.8 (4)H7A—C7—H7C109.5
C3—C2—C7120.4 (4)H7B—C7—H7C109.5
Cl1i—Pd1—N1—C170.4 (3)C1—C2—C3—C4−0.5 (7)
Cl1—Pd1—N1—C1−109.6 (3)C7—C2—C3—C4179.7 (5)
Pd1—N1—C1—C290.5 (4)C2—C3—C4—C50.0 (7)
Pd1—N1—C1—C6−89.0 (4)C3—C4—C5—C6−0.5 (7)
C6—C1—C2—C31.6 (6)C4—C5—C6—C11.5 (7)
N1—C1—C2—C3−177.9 (4)C2—C1—C6—C5−2.1 (7)
C6—C1—C2—C7−178.7 (4)N1—C1—C6—C5177.4 (4)
N1—C1—C2—C71.9 (7)
D—H···AD—HH···AD···AD—H···A
N1—H1N···Cl1ii0.85 (2)2.71 (3)3.410 (4)141 (3)
N1—H2N···Cl1iii0.90 (2)2.43 (3)3.319 (4)172 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯Cl1i0.85 (2)2.71 (3)3.410 (4)141 (3)
N1—H2N⋯Cl1ii0.90 (2)2.43 (3)3.319 (4)172 (3)

Symmetry codes: (i) ; (ii) .

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Journal:  J Inorg Biochem       Date:  1996-08-01       Impact factor: 4.155

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Authors:  José S Casas; Eduardo E Castellano; Javier Ellena; María S García-Tasende; M Luz Pérez-Parallé; Agustín Sánchez; Angeles Sánchez-González; José Sordo; Angeles Touceda
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  3 in total
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1.  trans-Dichloridobis(4-methoxy-aniline-κN)palladium(II).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-23
  1 in total

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