Literature DB >> 21583027

Aqua-bis(2-amino-1,3-thia-zole-4-acetato-κO,N)nickel(II).

Qiu-Fen He1, Dong-Sheng Li, Jun Zhao, Xi-Jun Ke, Cai Li.   

Abstract

In the crystal structure of the title compound, [Ni(C(5)H(5)N(2)O(2)S)(2)(H(2)O)], the Ni(II) cation is located on a twofold rotation axis and chelated by two 2-amino-1,3-thia-zole-4-acetate (ata) anions in the basal coordination plane; a water mol-ecule located on the same twofold rotation axis completes the distorted square-pyramidal coordination geometry. Inter-molecular O-H⋯O and N-H⋯O hydrogen bonding, as well as π-π stacking between parallel thia-zole rings [centroid-centroid distance 3.531 (8) Å], helps to stabilize the crystal structure.

Entities:  

Year:  2009        PMID: 21583027      PMCID: PMC2969729          DOI: 10.1107/S1600536809017978

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the potential use of discrete and polymeric metal-organic complexes as functional materials in catalysis, mol­ecular recognition, separation and non-linear optics, see: Batten & Robson (1998 ▶); Fujita et al. (1994 ▶); Han et al. (2008 ▶); Wu et al. (2001 ▶).

Experimental

Crystal data

[Ni(C5H5N2O2S)2(H2O)] M = 391.07 Monoclinic, a = 12.0875 (12) Å b = 9.1278 (9) Å c = 12.7715 (12) Å β = 95.1190 (10)° V = 1403.5 (2) Å3 Z = 4 Mo Kα radiation μ = 1.71 mm−1 T = 293 K 0.12 × 0.10 × 0.06 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.821, T max = 0.904 3487 measured reflections 1231 independent reflections 1119 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.065 S = 1.01 1231 reflections 102 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809017978/xu2518sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017978/xu2518Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C5H5N2O2S)2(H2O)]F(000) = 800
Mr = 391.07Dx = 1.851 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2106 reflections
a = 12.0875 (12) Åθ = 2.8–25.0°
b = 9.1278 (9) ŵ = 1.71 mm1
c = 12.7715 (12) ÅT = 293 K
β = 95.119 (1)°Prism, green
V = 1403.5 (2) Å30.12 × 0.10 × 0.06 mm
Z = 4
Bruker SMART CCD diffractometer1231 independent reflections
Radiation source: fine-focus sealed tube1119 reflections with I > 2σ(I)
graphiteRint = 0.014
CCD Profile fitting scansθmax = 25.0°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→14
Tmin = 0.821, Tmax = 0.904k = −5→10
3487 measured reflectionsl = −15→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.065H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.034P)2 + 2.301P] where P = (Fo2 + 2Fc2)/3
1231 reflections(Δ/σ)max < 0.001
102 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.69428 (4)0.25000.02321 (14)
N10.10680 (18)0.7919 (2)0.49121 (17)0.0423 (6)
H1A0.14280.79760.43630.051*
H1B0.13410.82970.54960.051*
N2−0.04038 (14)0.6630 (2)0.40062 (14)0.0264 (4)
O1−0.16405 (12)0.68137 (17)0.20264 (12)0.0314 (4)
O2−0.33123 (12)0.5835 (2)0.19153 (12)0.0369 (4)
O30.00000.9133 (2)0.25000.0401 (6)
H30.05700.94330.22700.060*
C1−0.23701 (16)0.5998 (2)0.23761 (16)0.0254 (5)
C2−0.20703 (19)0.5149 (3)0.33761 (18)0.0336 (5)
H2A−0.27510.48200.36500.040*
H2B−0.16570.42830.32040.040*
C30.00918 (19)0.7248 (3)0.48595 (17)0.0295 (5)
C4−0.14006 (17)0.5971 (2)0.42235 (17)0.0280 (5)
C5−0.16604 (19)0.6117 (3)0.52138 (18)0.0364 (6)
H5−0.22990.57390.54680.044*
S1−0.06560 (5)0.71004 (8)0.59589 (5)0.03934 (19)
U11U22U33U12U13U23
Ni10.0186 (2)0.0286 (2)0.0224 (2)0.0000.00139 (15)0.000
N10.0395 (12)0.0586 (15)0.0285 (11)−0.0167 (11)0.0017 (9)−0.0117 (10)
N20.0241 (9)0.0319 (10)0.0229 (9)−0.0007 (8)0.0009 (7)−0.0001 (8)
O10.0225 (8)0.0422 (9)0.0291 (9)−0.0047 (7)0.0005 (6)0.0090 (7)
O20.0217 (8)0.0551 (11)0.0327 (9)−0.0077 (7)−0.0033 (6)0.0127 (8)
O30.0262 (12)0.0300 (12)0.0666 (17)0.0000.0190 (12)0.000
C10.0217 (11)0.0292 (11)0.0252 (11)0.0004 (9)0.0016 (9)−0.0006 (9)
C20.0290 (11)0.0352 (13)0.0354 (13)−0.0065 (10)−0.0038 (10)0.0099 (11)
C30.0294 (12)0.0343 (13)0.0246 (12)0.0031 (10)0.0014 (9)−0.0006 (10)
C40.0239 (10)0.0314 (12)0.0281 (12)0.0023 (9)−0.0004 (9)0.0071 (10)
C50.0278 (12)0.0504 (15)0.0311 (13)0.0004 (11)0.0039 (10)0.0096 (12)
S10.0384 (4)0.0570 (4)0.0230 (3)0.0039 (3)0.0044 (3)−0.0030 (3)
Ni1—O12.0243 (15)O2—C11.243 (3)
Ni1—O1i2.0243 (15)O3—H30.8200
Ni1—O31.999 (2)C1—C21.510 (3)
Ni1—N22.0465 (18)C2—C41.494 (3)
Ni1—N2i2.0465 (18)C2—H2A0.9700
N1—C31.326 (3)C2—H2B0.9700
N1—H1A0.8600C3—S11.742 (2)
N1—H1B0.8600C4—C51.337 (3)
N2—C31.322 (3)C5—S11.726 (3)
N2—C41.397 (3)C5—H50.9300
O1—C11.266 (3)
O3—Ni1—O193.34 (5)O2—C1—C2118.64 (19)
O3—Ni1—O1i93.34 (5)O1—C1—C2118.57 (18)
O1—Ni1—O1i173.33 (9)C4—C2—C1115.36 (19)
O3—Ni1—N298.02 (5)C4—C2—H2A108.4
O1—Ni1—N287.90 (7)C1—C2—H2A108.4
O1i—Ni1—N291.17 (7)C4—C2—H2B108.4
O3—Ni1—N2i98.02 (5)C1—C2—H2B108.4
O1—Ni1—N2i91.17 (7)H2A—C2—H2B107.5
O1i—Ni1—N2i87.90 (7)N2—C3—N1125.1 (2)
N2—Ni1—N2i163.96 (11)N2—C3—S1113.70 (17)
C3—N1—H1A120.0N1—C3—S1121.23 (17)
C3—N1—H1B120.0C5—C4—N2115.1 (2)
H1A—N1—H1B120.0C5—C4—C2125.3 (2)
C3—N2—C4110.83 (19)N2—C4—C2119.58 (19)
C3—N2—Ni1125.93 (16)C4—C5—S1111.14 (18)
C4—N2—Ni1121.96 (14)C4—C5—H5124.4
C1—O1—Ni1128.58 (14)S1—C5—H5124.4
Ni1—O3—H3109.5C5—S1—C389.19 (11)
O2—C1—O1122.8 (2)
O3—Ni1—N2—C3−50.65 (19)C4—N2—C3—N1177.7 (2)
O1—Ni1—N2—C3−143.73 (19)Ni1—N2—C3—N1−15.1 (3)
O1i—Ni1—N2—C342.88 (19)C4—N2—C3—S1−1.8 (2)
N2i—Ni1—N2—C3129.35 (19)Ni1—N2—C3—S1165.31 (11)
O3—Ni1—N2—C4115.15 (16)C3—N2—C4—C51.4 (3)
O1—Ni1—N2—C422.08 (17)Ni1—N2—C4—C5−166.37 (17)
O1i—Ni1—N2—C4−151.32 (17)C3—N2—C4—C2−177.3 (2)
N2i—Ni1—N2—C4−64.85 (16)Ni1—N2—C4—C215.0 (3)
O3—Ni1—O1—C1−135.01 (18)C1—C2—C4—C5126.8 (3)
N2—Ni1—O1—C1−37.09 (19)C1—C2—C4—N2−54.7 (3)
N2i—Ni1—O1—C1126.88 (19)N2—C4—C5—S1−0.3 (3)
Ni1—O1—C1—O2−167.76 (16)C2—C4—C5—S1178.27 (18)
Ni1—O1—C1—C210.2 (3)C4—C5—S1—C3−0.6 (2)
O2—C1—C2—C4−140.5 (2)N2—C3—S1—C51.44 (19)
O1—C1—C2—C441.5 (3)N1—C3—S1—C5−178.2 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.862.102.816 (3)140
N1—H1B···O2ii0.861.992.839 (3)170
O3—H3···O2iii0.821.942.7211 (19)158
Table 1

Selected bond lengths (Å)

Ni1—O12.0243 (15)
Ni1—O31.999 (2)
Ni1—N22.0465 (18)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.862.102.816 (3)140
N1—H1B⋯O2ii0.861.992.839 (3)170
O3—H3⋯O2iii0.821.942.7211 (19)158

Symmetry codes: (i) ; (ii) ; (iii) .

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