| Literature DB >> 21583027 |
Qiu-Fen He1, Dong-Sheng Li, Jun Zhao, Xi-Jun Ke, Cai Li.
Abstract
In the crystal structure of the title compound, [Ni(C(5)H(5)N(2)O(2)S)(2)(H(2)O)], the Ni(II) cation is located on a twofold rotation axis and chelated by two 2-amino-1,3-thia-zole-4-acetate (ata) anions in the basal coordination plane; a water mol-ecule located on the same twofold rotation axis completes the distorted square-pyramidal coordination geometry. Inter-molecular O-H⋯O and N-H⋯O hydrogen bonding, as well as π-π stacking between parallel thia-zole rings [centroid-centroid distance 3.531 (8) Å], helps to stabilize the crystal structure.Entities:
Year: 2009 PMID: 21583027 PMCID: PMC2969729 DOI: 10.1107/S1600536809017978
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(C5H5N2O2S)2(H2O)] | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2106 reflections |
| θ = 2.8–25.0° | |
| µ = 1.71 mm−1 | |
| β = 95.119 (1)° | Prism, green |
| 0.12 × 0.10 × 0.06 mm | |
| Bruker SMART CCD diffractometer | 1231 independent reflections |
| Radiation source: fine-focus sealed tube | 1119 reflections with |
| graphite | |
| CCD Profile fitting scans | θmax = 25.0°, θmin = 2.8° |
| Absorption correction: multi-scan ( | |
| 3487 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1231 reflections | (Δ/σ)max < 0.001 |
| 102 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Ni1 | 0.0000 | 0.69428 (4) | 0.2500 | 0.02321 (14) | |
| N1 | 0.10680 (18) | 0.7919 (2) | 0.49121 (17) | 0.0423 (6) | |
| H1A | 0.1428 | 0.7976 | 0.4363 | 0.051* | |
| H1B | 0.1341 | 0.8297 | 0.5496 | 0.051* | |
| N2 | −0.04038 (14) | 0.6630 (2) | 0.40062 (14) | 0.0264 (4) | |
| O1 | −0.16405 (12) | 0.68137 (17) | 0.20264 (12) | 0.0314 (4) | |
| O2 | −0.33123 (12) | 0.5835 (2) | 0.19153 (12) | 0.0369 (4) | |
| O3 | 0.0000 | 0.9133 (2) | 0.2500 | 0.0401 (6) | |
| H3 | 0.0570 | 0.9433 | 0.2270 | 0.060* | |
| C1 | −0.23701 (16) | 0.5998 (2) | 0.23761 (16) | 0.0254 (5) | |
| C2 | −0.20703 (19) | 0.5149 (3) | 0.33761 (18) | 0.0336 (5) | |
| H2A | −0.2751 | 0.4820 | 0.3650 | 0.040* | |
| H2B | −0.1657 | 0.4283 | 0.3204 | 0.040* | |
| C3 | 0.00918 (19) | 0.7248 (3) | 0.48595 (17) | 0.0295 (5) | |
| C4 | −0.14006 (17) | 0.5971 (2) | 0.42235 (17) | 0.0280 (5) | |
| C5 | −0.16604 (19) | 0.6117 (3) | 0.52138 (18) | 0.0364 (6) | |
| H5 | −0.2299 | 0.5739 | 0.5468 | 0.044* | |
| S1 | −0.06560 (5) | 0.71004 (8) | 0.59589 (5) | 0.03934 (19) |
| Ni1 | 0.0186 (2) | 0.0286 (2) | 0.0224 (2) | 0.000 | 0.00139 (15) | 0.000 |
| N1 | 0.0395 (12) | 0.0586 (15) | 0.0285 (11) | −0.0167 (11) | 0.0017 (9) | −0.0117 (10) |
| N2 | 0.0241 (9) | 0.0319 (10) | 0.0229 (9) | −0.0007 (8) | 0.0009 (7) | −0.0001 (8) |
| O1 | 0.0225 (8) | 0.0422 (9) | 0.0291 (9) | −0.0047 (7) | 0.0005 (6) | 0.0090 (7) |
| O2 | 0.0217 (8) | 0.0551 (11) | 0.0327 (9) | −0.0077 (7) | −0.0033 (6) | 0.0127 (8) |
| O3 | 0.0262 (12) | 0.0300 (12) | 0.0666 (17) | 0.000 | 0.0190 (12) | 0.000 |
| C1 | 0.0217 (11) | 0.0292 (11) | 0.0252 (11) | 0.0004 (9) | 0.0016 (9) | −0.0006 (9) |
| C2 | 0.0290 (11) | 0.0352 (13) | 0.0354 (13) | −0.0065 (10) | −0.0038 (10) | 0.0099 (11) |
| C3 | 0.0294 (12) | 0.0343 (13) | 0.0246 (12) | 0.0031 (10) | 0.0014 (9) | −0.0006 (10) |
| C4 | 0.0239 (10) | 0.0314 (12) | 0.0281 (12) | 0.0023 (9) | −0.0004 (9) | 0.0071 (10) |
| C5 | 0.0278 (12) | 0.0504 (15) | 0.0311 (13) | 0.0004 (11) | 0.0039 (10) | 0.0096 (12) |
| S1 | 0.0384 (4) | 0.0570 (4) | 0.0230 (3) | 0.0039 (3) | 0.0044 (3) | −0.0030 (3) |
| Ni1—O1 | 2.0243 (15) | O2—C1 | 1.243 (3) |
| Ni1—O1i | 2.0243 (15) | O3—H3 | 0.8200 |
| Ni1—O3 | 1.999 (2) | C1—C2 | 1.510 (3) |
| Ni1—N2 | 2.0465 (18) | C2—C4 | 1.494 (3) |
| Ni1—N2i | 2.0465 (18) | C2—H2A | 0.9700 |
| N1—C3 | 1.326 (3) | C2—H2B | 0.9700 |
| N1—H1A | 0.8600 | C3—S1 | 1.742 (2) |
| N1—H1B | 0.8600 | C4—C5 | 1.337 (3) |
| N2—C3 | 1.322 (3) | C5—S1 | 1.726 (3) |
| N2—C4 | 1.397 (3) | C5—H5 | 0.9300 |
| O1—C1 | 1.266 (3) | ||
| O3—Ni1—O1 | 93.34 (5) | O2—C1—C2 | 118.64 (19) |
| O3—Ni1—O1i | 93.34 (5) | O1—C1—C2 | 118.57 (18) |
| O1—Ni1—O1i | 173.33 (9) | C4—C2—C1 | 115.36 (19) |
| O3—Ni1—N2 | 98.02 (5) | C4—C2—H2A | 108.4 |
| O1—Ni1—N2 | 87.90 (7) | C1—C2—H2A | 108.4 |
| O1i—Ni1—N2 | 91.17 (7) | C4—C2—H2B | 108.4 |
| O3—Ni1—N2i | 98.02 (5) | C1—C2—H2B | 108.4 |
| O1—Ni1—N2i | 91.17 (7) | H2A—C2—H2B | 107.5 |
| O1i—Ni1—N2i | 87.90 (7) | N2—C3—N1 | 125.1 (2) |
| N2—Ni1—N2i | 163.96 (11) | N2—C3—S1 | 113.70 (17) |
| C3—N1—H1A | 120.0 | N1—C3—S1 | 121.23 (17) |
| C3—N1—H1B | 120.0 | C5—C4—N2 | 115.1 (2) |
| H1A—N1—H1B | 120.0 | C5—C4—C2 | 125.3 (2) |
| C3—N2—C4 | 110.83 (19) | N2—C4—C2 | 119.58 (19) |
| C3—N2—Ni1 | 125.93 (16) | C4—C5—S1 | 111.14 (18) |
| C4—N2—Ni1 | 121.96 (14) | C4—C5—H5 | 124.4 |
| C1—O1—Ni1 | 128.58 (14) | S1—C5—H5 | 124.4 |
| Ni1—O3—H3 | 109.5 | C5—S1—C3 | 89.19 (11) |
| O2—C1—O1 | 122.8 (2) | ||
| O3—Ni1—N2—C3 | −50.65 (19) | C4—N2—C3—N1 | 177.7 (2) |
| O1—Ni1—N2—C3 | −143.73 (19) | Ni1—N2—C3—N1 | −15.1 (3) |
| O1i—Ni1—N2—C3 | 42.88 (19) | C4—N2—C3—S1 | −1.8 (2) |
| N2i—Ni1—N2—C3 | 129.35 (19) | Ni1—N2—C3—S1 | 165.31 (11) |
| O3—Ni1—N2—C4 | 115.15 (16) | C3—N2—C4—C5 | 1.4 (3) |
| O1—Ni1—N2—C4 | 22.08 (17) | Ni1—N2—C4—C5 | −166.37 (17) |
| O1i—Ni1—N2—C4 | −151.32 (17) | C3—N2—C4—C2 | −177.3 (2) |
| N2i—Ni1—N2—C4 | −64.85 (16) | Ni1—N2—C4—C2 | 15.0 (3) |
| O3—Ni1—O1—C1 | −135.01 (18) | C1—C2—C4—C5 | 126.8 (3) |
| N2—Ni1—O1—C1 | −37.09 (19) | C1—C2—C4—N2 | −54.7 (3) |
| N2i—Ni1—O1—C1 | 126.88 (19) | N2—C4—C5—S1 | −0.3 (3) |
| Ni1—O1—C1—O2 | −167.76 (16) | C2—C4—C5—S1 | 178.27 (18) |
| Ni1—O1—C1—C2 | 10.2 (3) | C4—C5—S1—C3 | −0.6 (2) |
| O2—C1—C2—C4 | −140.5 (2) | N2—C3—S1—C5 | 1.44 (19) |
| O1—C1—C2—C4 | 41.5 (3) | N1—C3—S1—C5 | −178.2 (2) |
| H··· | ||||
| N1—H1A···O1i | 0.86 | 2.10 | 2.816 (3) | 140 |
| N1—H1B···O2ii | 0.86 | 1.99 | 2.839 (3) | 170 |
| O3—H3···O2iii | 0.82 | 1.94 | 2.7211 (19) | 158 |
Selected bond lengths (Å)
| Ni1—O1 | 2.0243 (15) |
| Ni1—O3 | 1.999 (2) |
| Ni1—N2 | 2.0465 (18) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.10 | 2.816 (3) | 140 |
| N1—H1 | 0.86 | 1.99 | 2.839 (3) | 170 |
| O3—H3⋯O2iii | 0.82 | 1.94 | 2.7211 (19) | 158 |
Symmetry codes: (i) ; (ii) ; (iii) .