Literature DB >> 21578631

Aqua-(2,2'-bipyridine-κN,N')[2-(3-thien-yl)malonato-κO,O']zinc(II) dihydrate.

Cai-Xia Meng, Xue-Gang Zheng, Feng Fu, Xiao-Ning Zhang, Peng Zhang.   

Abstract

In the crystal structure of the title compound, [Zn(C(7)H(4)O(4)S)(C(10)H(8)N(2))(H(2)O)]·2H(2)O, the Zn(II) ion assumes a trigonal-bipyramidal coordination geometry completed by two N atoms from a 2,2'-bipyridine ligand, two O atoms from a 2-(3-thien-yl)malonate anion and a water mol-ecule. The S atom of the 2-(3-thien-yl)malonate ligand is disordered over two sites with an occupancy ratio of 0.701 (5):0.299 (5). Inter-molecular O-H⋯O hydrogen bonding is present in the crystal structure.

Entities:  

Year:  2009        PMID: 21578631      PMCID: PMC2971794          DOI: 10.1107/S1600536809047448

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to organic heterocycles, see: Lin et al. (2008 ▶); Jin et al. (2001 ▶). For related thio­phene­malonate complexes, see: He et al. (2009 ▶); Murray et al. (2008 ▶); Huang et al. (2009 ▶); Lim et al. (2006 ▶). For hydrogen-bonded rings in polymeric complexes, see: Eppel & Bernstein (2009 ▶); Etter (1990 ▶); Nichol & Clegg (2009 ▶).

Experimental

Crystal data

[Zn(C7H4O4S)(C10H8N2)(H2O)]·2H2O M = 459.76 Orthorhombic, a = 15.9978 (10) Å b = 14.5647 (9) Å c = 16.5889 (10) Å V = 3865.3 (4) Å3 Z = 8 Mo Kα radiation μ = 1.42 mm−1 T = 293 K 0.15 × 0.10 × 0.06 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.843, T max = 0.918 23919 measured reflections 4752 independent reflections 3107 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.094 S = 1.01 4752 reflections 273 parameters 1 restraint H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.39 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809047448/xu2654sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809047448/xu2654Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C7H4O4S)(C10H8N2)(H2O)]·2H2OF(000) = 1888
Mr = 459.76Dx = 1.580 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 4757 reflections
a = 15.9978 (10) Åθ = 2.3–28.3°
b = 14.5647 (9) ŵ = 1.42 mm1
c = 16.5889 (10) ÅT = 293 K
V = 3865.3 (4) Å3Prism, colorless
Z = 80.15 × 0.10 × 0.06 mm
Bruker SMART CCD diffractometer4752 independent reflections
Radiation source: fine-focus sealed tube3107 reflections with I > 2σ(I)
graphiteRint = 0.045
φ and ω scansθmax = 28.3°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −20→21
Tmin = 0.843, Tmax = 0.918k = −19→19
23919 measured reflectionsl = −13→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.094w = 1/[σ2(Fo2) + (0.0445P)2 + 0.5447P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.013
4752 reflectionsΔρmax = 0.29 e Å3
273 parametersΔρmin = −0.39 e Å3
1 restraintExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0056 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Zn10.006504 (15)0.702960 (16)0.153476 (15)0.03795 (11)
S1A0.1680 (2)0.8323 (2)−0.04031 (12)0.0838 (10)0.701 (5)
C6A0.1110 (9)0.9380 (17)−0.0371 (9)0.086 (5)0.701 (5)
H6AA0.09750.9781−0.07880.103*0.701 (5)
S1B0.1113 (9)0.9171 (14)−0.0430 (7)0.104 (4)0.299 (5)
C6B0.1633 (18)0.8181 (18)−0.0295 (10)0.100 (11)0.299 (5)
H6BA0.18520.7779−0.06760.120*0.299 (5)
O10.11079 (10)0.71831 (9)0.21860 (10)0.0469 (4)
O20.21138 (11)0.80238 (11)0.27006 (12)0.0647 (5)
O3−0.03265 (9)0.82628 (10)0.19487 (10)0.0453 (4)
O4−0.00902 (9)0.96587 (11)0.23639 (12)0.0595 (5)
O5−0.06263 (9)0.61837 (11)0.21667 (11)0.0582 (5)
H18−0.11470.62950.21890.087*
H19−0.05470.56460.23510.087*
N10.06793 (11)0.61120 (12)0.07465 (11)0.0416 (4)
N2−0.05051 (12)0.73028 (13)0.04201 (13)0.0491 (5)
C10.01571 (12)0.89209 (14)0.20888 (13)0.0376 (5)
C20.14652 (14)0.79424 (14)0.23075 (14)0.0406 (5)
C30.10954 (12)0.88032 (14)0.19092 (13)0.0375 (5)
H30.13900.93400.21230.045*
C40.12234 (12)0.87804 (15)0.10066 (14)0.0426 (5)
C50.09144 (18)0.9444 (2)0.04875 (19)0.0722 (8)
H50.06951.00000.06700.087*
C70.16463 (17)0.81237 (18)0.05892 (17)0.0561 (7)
H70.19290.76080.08300.067*
C80.12881 (14)0.55364 (16)0.09565 (16)0.0515 (6)
H80.14280.54890.14990.062*
C90.17174 (16)0.50113 (19)0.04116 (19)0.0639 (7)
H90.21450.46230.05780.077*
C100.14997 (19)0.5074 (2)−0.0387 (2)0.0747 (9)
H100.17780.4723−0.07710.090*
C110.08674 (18)0.5659 (2)−0.06165 (17)0.0659 (7)
H110.07130.5706−0.11560.079*
C120.04632 (14)0.61766 (16)−0.00342 (14)0.0455 (6)
C13−0.02145 (15)0.68297 (17)−0.02135 (15)0.0478 (6)
C14−0.05387 (19)0.6973 (2)−0.09774 (17)0.0738 (9)
H14−0.03360.6638−0.14130.089*
C15−0.1155 (2)0.7605 (3)−0.1090 (2)0.0865 (10)
H15−0.13780.7699−0.16010.104*
C16−0.1442 (2)0.8096 (2)−0.0452 (2)0.0820 (10)
H16−0.18550.8539−0.05200.098*
C17−0.11076 (18)0.79227 (18)0.0303 (2)0.0716 (9)
H17−0.13100.82490.07440.086*
O60.30803 (11)0.96079 (13)0.28178 (15)0.0902 (7)
H200.27900.91200.28350.135*
H210.35740.94240.29190.135*
O70.27699 (11)0.62083 (13)0.27671 (16)0.0973 (8)
H220.24510.66750.27740.146*
H230.24330.57670.28510.146*
U11U22U33U12U13U23
Zn10.03884 (16)0.03100 (15)0.04402 (17)−0.00086 (10)−0.00143 (11)−0.00347 (11)
S1A0.0931 (16)0.102 (2)0.0563 (9)−0.0365 (14)0.0254 (9)−0.0082 (10)
C6A0.053 (5)0.109 (11)0.096 (9)0.016 (5)0.005 (5)0.048 (7)
S1B0.113 (6)0.124 (8)0.076 (4)−0.004 (4)0.021 (3)0.031 (3)
C6B0.078 (12)0.041 (8)0.18 (3)−0.002 (8)0.059 (12)0.034 (10)
O10.0499 (9)0.0316 (8)0.0592 (10)0.0009 (7)−0.0149 (8)0.0001 (7)
O20.0510 (10)0.0531 (11)0.0899 (14)−0.0023 (8)−0.0338 (10)0.0044 (9)
O30.0337 (8)0.0366 (9)0.0655 (11)−0.0017 (7)0.0039 (8)−0.0123 (8)
O40.0452 (9)0.0363 (9)0.0968 (14)0.0014 (7)0.0116 (9)−0.0224 (9)
O50.0435 (9)0.0411 (9)0.0899 (13)0.0012 (7)0.0131 (9)0.0187 (9)
N10.0401 (10)0.0402 (10)0.0446 (11)−0.0004 (8)0.0010 (8)−0.0022 (9)
N20.0494 (12)0.0404 (11)0.0574 (13)0.0018 (9)−0.0142 (10)0.0001 (10)
C10.0366 (11)0.0317 (11)0.0444 (13)0.0000 (9)0.0015 (9)−0.0017 (10)
C20.0382 (12)0.0396 (12)0.0442 (13)0.0046 (10)−0.0028 (10)−0.0005 (10)
C30.0322 (11)0.0307 (11)0.0497 (13)−0.0019 (9)−0.0042 (10)−0.0026 (10)
C40.0318 (11)0.0440 (13)0.0518 (14)−0.0058 (9)0.0033 (10)0.0081 (11)
C50.0660 (17)0.077 (2)0.073 (2)0.0156 (15)0.0104 (15)0.0262 (16)
C70.0586 (16)0.0536 (16)0.0560 (17)−0.0071 (12)0.0175 (13)−0.0004 (13)
C80.0479 (13)0.0487 (14)0.0579 (16)0.0061 (11)−0.0070 (12)−0.0047 (12)
C90.0522 (15)0.0572 (17)0.082 (2)0.0089 (12)0.0002 (15)−0.0139 (15)
C100.0691 (19)0.080 (2)0.075 (2)0.0102 (16)0.0159 (17)−0.0264 (17)
C110.0748 (18)0.078 (2)0.0450 (15)−0.0004 (16)0.0044 (13)−0.0155 (14)
C120.0455 (13)0.0467 (14)0.0441 (14)−0.0095 (11)0.0024 (11)−0.0032 (11)
C130.0495 (13)0.0500 (15)0.0439 (14)−0.0112 (11)−0.0053 (11)0.0067 (11)
C140.0690 (19)0.104 (2)0.0487 (17)−0.0068 (17)−0.0068 (15)0.0143 (16)
C150.081 (2)0.101 (3)0.077 (2)−0.011 (2)−0.0295 (19)0.034 (2)
C160.070 (2)0.063 (2)0.113 (3)0.0004 (15)−0.042 (2)0.0220 (19)
C170.0668 (18)0.0556 (17)0.092 (2)0.0114 (14)−0.0271 (17)−0.0064 (15)
O60.0429 (11)0.0615 (12)0.166 (2)0.0055 (9)−0.0057 (12)−0.0011 (13)
O70.0408 (10)0.0598 (13)0.191 (2)0.0105 (9)−0.0077 (13)0.0120 (14)
Zn1—O12.0001 (15)C3—H30.9800
Zn1—O32.0224 (15)C4—C71.361 (3)
Zn1—O51.9596 (15)C4—C51.386 (3)
Zn1—N12.1123 (18)C5—H50.9317
Zn1—N22.100 (2)C7—H70.9630
S1A—C71.672 (3)C8—C91.369 (3)
S1A—C6A1.79 (2)C8—H80.9300
C6A—C51.461 (16)C9—C101.373 (4)
C6A—H6AA0.9300C9—H90.9300
S1B—C6B1.68 (3)C10—C111.376 (4)
S1B—C51.606 (14)C10—H100.9300
C6B—C71.469 (17)C11—C121.385 (3)
C6B—H6BA0.9300C11—H110.9300
O1—C21.261 (2)C12—C131.473 (3)
O2—C21.231 (3)C13—C141.385 (3)
O3—C11.254 (2)C14—C151.361 (4)
O4—C11.233 (2)C14—H140.9300
O5—H180.8499C15—C161.358 (5)
O5—H190.8500C15—H150.9300
N1—C81.331 (3)C16—C171.385 (4)
N1—C121.344 (3)C16—H160.9300
N2—C171.335 (3)C17—H170.9300
N2—C131.340 (3)O6—H200.8499
C1—C31.540 (3)O6—H210.8501
C2—C31.536 (3)O7—H220.8500
C3—C41.512 (3)O7—H230.8501
O5—Zn1—O1104.60 (7)C4—C5—C6A119.0 (9)
O5—Zn1—O3101.65 (6)C4—C5—S1B110.2 (6)
O1—Zn1—O388.61 (6)C6A—C5—S1B10.7 (17)
O5—Zn1—N2110.18 (7)C4—C5—H5122.6
O1—Zn1—N2144.76 (7)C6A—C5—H5116.9
O3—Zn1—N289.78 (7)S1B—C5—H5126.7
O5—Zn1—N1101.30 (7)C4—C7—S1A113.3 (2)
O1—Zn1—N190.98 (7)C4—C7—C6B117.4 (11)
O3—Zn1—N1156.38 (7)S1A—C7—C6B7.3 (11)
N2—Zn1—N177.11 (7)C4—C7—H7124.8
C7—S1A—C6A95.9 (5)S1A—C7—H7121.8
C5—C6A—S1A101.1 (10)C6B—C7—H7117.7
C5—C6A—H6AA129.4N1—C8—C9123.1 (2)
S1A—C6A—H6AA129.4N1—C8—H8118.5
C6B—S1B—C5100.6 (10)C9—C8—H8118.5
S1B—C6B—C7100.9 (15)C8—C9—C10118.2 (3)
S1B—C6B—H6BA129.5C8—C9—H9120.9
C7—C6B—H6BA129.5C10—C9—H9120.9
C2—O1—Zn1124.22 (14)C9—C10—C11119.7 (3)
C1—O3—Zn1123.42 (13)C9—C10—H10120.2
Zn1—O5—H18117.2C11—C10—H10120.2
Zn1—O5—H19133.4C10—C11—C12119.1 (3)
H18—O5—H19107.9C10—C11—H11120.4
C8—N1—C12119.0 (2)C12—C11—H11120.4
C8—N1—Zn1125.22 (16)N1—C12—C11120.9 (2)
C12—N1—Zn1115.63 (15)N1—C12—C13115.4 (2)
C17—N2—C13119.0 (2)C11—C12—C13123.7 (2)
C17—N2—Zn1124.7 (2)N2—C13—C14120.7 (2)
C13—N2—Zn1116.26 (16)N2—C13—C12115.4 (2)
O4—C1—O3122.49 (19)C14—C13—C12123.9 (3)
O4—C1—C3118.79 (18)C15—C14—C13119.9 (3)
O3—C1—C3118.73 (18)C15—C14—H14120.0
O2—C2—O1123.4 (2)C13—C14—H14120.0
O2—C2—C3118.29 (19)C16—C15—C14119.6 (3)
O1—C2—C3118.20 (19)C16—C15—H15120.2
C4—C3—C2110.86 (17)C14—C15—H15120.2
C4—C3—C1109.04 (17)C15—C16—C17118.6 (3)
C2—C3—C1112.53 (17)C15—C16—H16120.7
C4—C3—H3108.1C17—C16—H16120.7
C2—C3—H3108.1N2—C17—C16122.2 (3)
C1—C3—H3108.1N2—C17—H17118.9
C7—C4—C5110.6 (2)C16—C17—H17118.9
C7—C4—C3125.9 (2)H20—O6—H21103.8
C5—C4—C3123.5 (2)H22—O7—H23102.8
C7—S1A—C6A—C5−2.2 (10)C7—C4—C5—C6A−3.1 (10)
C5—S1B—C6B—C7−1.9 (17)C3—C4—C5—C6A177.0 (9)
O5—Zn1—O1—C2−136.45 (18)C7—C4—C5—S1B3.7 (7)
O3—Zn1—O1—C2−34.78 (18)C3—C4—C5—S1B−176.2 (7)
N2—Zn1—O1—C252.9 (2)S1A—C6A—C5—C43.4 (13)
N1—Zn1—O1—C2121.60 (18)S1A—C6A—C5—S1B−33 (5)
O5—Zn1—O3—C1139.19 (18)C6B—S1B—C5—C4−0.9 (14)
O1—Zn1—O3—C134.56 (18)C6B—S1B—C5—C6A145 (6)
N2—Zn1—O3—C1−110.24 (19)C5—C4—C7—S1A1.1 (3)
N1—Zn1—O3—C1−54.7 (3)C3—C4—C7—S1A−179.0 (2)
O5—Zn1—N1—C8−72.87 (18)C5—C4—C7—C6B−5.5 (12)
O1—Zn1—N1—C832.23 (18)C3—C4—C7—C6B174.4 (12)
O3—Zn1—N1—C8121.0 (2)C6A—S1A—C7—C40.8 (7)
N2—Zn1—N1—C8178.76 (19)C6A—S1A—C7—C6B127 (10)
O5—Zn1—N1—C12111.89 (16)S1B—C6B—C7—C44.5 (18)
O1—Zn1—N1—C12−143.01 (15)S1B—C6B—C7—S1A−52 (9)
O3—Zn1—N1—C12−54.3 (2)C12—N1—C8—C91.0 (3)
N2—Zn1—N1—C123.51 (15)Zn1—N1—C8—C9−174.14 (18)
O5—Zn1—N2—C1782.5 (2)N1—C8—C9—C10−0.9 (4)
O1—Zn1—N2—C17−107.2 (2)C8—C9—C10—C110.4 (4)
O3—Zn1—N2—C17−19.9 (2)C9—C10—C11—C120.2 (4)
N1—Zn1—N2—C17179.9 (2)C8—N1—C12—C11−0.4 (3)
O5—Zn1—N2—C13−99.53 (17)Zn1—N1—C12—C11175.18 (18)
O1—Zn1—N2—C1370.9 (2)C8—N1—C12—C13−179.9 (2)
O3—Zn1—N2—C13158.13 (17)Zn1—N1—C12—C13−4.4 (2)
N1—Zn1—N2—C13−2.06 (16)C10—C11—C12—N1−0.2 (4)
Zn1—O3—C1—O4−177.78 (18)C10—C11—C12—C13179.4 (2)
Zn1—O3—C1—C32.3 (3)C17—N2—C13—C14−0.7 (4)
Zn1—O1—C2—O2−178.94 (18)Zn1—N2—C13—C14−178.78 (19)
Zn1—O1—C2—C3−2.1 (3)C17—N2—C13—C12178.6 (2)
O2—C2—C3—C4107.2 (2)Zn1—N2—C13—C120.5 (3)
O1—C2—C3—C4−69.8 (2)N1—C12—C13—N22.6 (3)
O2—C2—C3—C1−130.3 (2)C11—C12—C13—N2−176.9 (2)
O1—C2—C3—C152.6 (3)N1—C12—C13—C14−178.2 (2)
O4—C1—C3—C4−109.2 (2)C11—C12—C13—C142.3 (4)
O3—C1—C3—C470.7 (2)N2—C13—C14—C150.5 (4)
O4—C1—C3—C2127.4 (2)C12—C13—C14—C15−178.7 (3)
O3—C1—C3—C2−52.7 (3)C13—C14—C15—C160.6 (5)
C2—C3—C4—C7−3.5 (3)C14—C15—C16—C17−1.4 (5)
C1—C3—C4—C7−127.9 (2)C13—N2—C17—C16−0.2 (4)
C2—C3—C4—C5176.4 (2)Zn1—N2—C17—C16177.8 (2)
C1—C3—C4—C552.0 (3)C15—C16—C17—N21.2 (5)
D—H···AD—HH···AD···AD—H···A
O5—H18···O7i0.851.742.568 (2)165
O5—H19···O4ii0.851.832.618 (2)155
O6—H20···O20.851.942.784 (2)172
O6—H21···O4iii0.852.222.943 (2)144
O6—H21···O3iii0.852.453.238 (2)154
O7—H22···O20.852.042.847 (3)158
O7—H22···O10.852.473.165 (2)139
O7—H23···O6iv0.851.882.700 (3)162
Table 1

Selected bond lengths (Å)

Zn1—O12.0001 (15)
Zn1—O32.0224 (15)
Zn1—O51.9596 (15)
Zn1—N12.1123 (18)
Zn1—N22.100 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O5—H18⋯O7i 0.851.742.568 (2)165
O5—H19⋯O4ii 0.851.832.618 (2)155
O6—H20⋯O20.851.942.784 (2)172
O6—H21⋯O4iii 0.852.222.943 (2)144
O6—H21⋯O3iii 0.852.453.238 (2)154
O7—H22⋯O20.852.042.847 (3)158
O7—H22⋯O10.852.473.165 (2)139
O7—H23⋯O6iv 0.851.882.700 (3)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Syntheses, structures and properties of seven isomorphous 1D Ln3+complexes Ln(BTA)(HCOO)(H2O)3 (H2BTA = bis(tetrazoly)amine, Ln = Pr, Gd, Eu, Tb, Dy, Er, Yb) and two 3D Ln3+ complexes Ln(HCOO)3 (Ln = Pr, Nd).

Authors:  Jiao-Min Lin; Yang-Fan Guan; Dong-Yao Wang; Wen Dong; Xiu-Teng Wang; Song Gao
Journal:  Dalton Trans       Date:  2008-10-06       Impact factor: 4.390

3.  Aqua-bis(2-amino-1,3-thia-zole-4-acetato-κO,N)nickel(II).

Authors:  Qiu-Fen He; Dong-Sheng Li; Jun Zhao; Xi-Jun Ke; Cai Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20
  3 in total

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