Literature DB >> 21583017

Tetra-aqua-(1,10-phenanthroline-5,6-dione-κN,N')cobalt(II) dinitrate.

Wen-Juan Shi1.   

Abstract

The asymmetric unit of the title compound, [Co(C(12)H(6)N(2)O(2))(H(2)O)(4)](NO(3))(2), consists of a Co(II) complex cation with twofold rotational symmetry and two nitrate anions. The Co(II) atom has a distorted octa-hedral geometry with the basal plane occupied by two 1,10-phenanthroline-5,6-dione N atoms and two aqua O atoms, with the other two aqua ligands in axial positions. The aqua ligands are involved in extensive hydrogen bonding to nitrate and 1,10-phenanthroline-5,6-dione O atoms.

Entities:  

Year:  2009        PMID: 21583017      PMCID: PMC2969730          DOI: 10.1107/S1600536809017826

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related complexes of 1,10-phenanthroline-5,6-dione, see: Calderazzo et al. (1999 ▶); Fox et al. (1991 ▶); Onuegbu et al. (2007 ▶); Paw & Eisenberg (1997 ▶); Ruiz et al. (1999 ▶); Shavaleev et al. (2003 ▶). For the structures of the related phenanthroline and phendione derivatives of cobalt(II), see: Liu et al. (2008 ▶); Rubin-Preminger et al. (2008 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Co(C12H6N2O2)(H2O)4](NO3)2 M = 465.20 Monoclinic, a = 12.7978 (12) Å b = 10.6388 (10) Å c = 13.0989 (12) Å β = 105.248 (2)° V = 1720.7 (3) Å3 Z = 4 Mo Kα radiation μ = 1.08 mm−1 T = 295 K 0.18 × 0.14 × 0.13 mm

Data collection

Bruker SMART APEX area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.830, T max = 0.873 4509 measured reflections 1695 independent reflections 1549 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.138 S = 1.04 1695 reflections 132 parameters 12 restraints H-atom parameters constrained Δρmax = 0.68 e Å−3 Δρmin = −0.61 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809017826/at2784sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017826/at2784Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C12H6N2O2)(H2O)4](NO3)2F(000) = 948
Mr = 465.20Dx = 1.796 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2754 reflections
a = 12.7978 (12) Åθ = 2.5–26.8°
b = 10.6388 (10) ŵ = 1.08 mm1
c = 13.0989 (12) ÅT = 295 K
β = 105.248 (2)°Block, purple
V = 1720.7 (3) Å30.18 × 0.14 × 0.13 mm
Z = 4
Bruker SMART APEX area-detector diffractometer1695 independent reflections
Radiation source: fine-focus sealed tube1549 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 26.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→15
Tmin = 0.830, Tmax = 0.873k = −5→13
4509 measured reflectionsl = −16→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.071P)2 + 5.1444P] where P = (Fo2 + 2Fc2)/3
1695 reflections(Δ/σ)max < 0.001
132 parametersΔρmax = 0.68 e Å3
12 restraintsΔρmin = −0.61 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50000.25979 (6)0.25000.0379 (3)
O1W0.5719 (3)0.3981 (3)0.3584 (3)0.0621 (10)
H1W10.58580.47260.34250.075*
H1W20.60360.38290.42280.075*
O10.4265 (4)−0.3399 (4)0.1544 (5)0.1088 (17)
O2W0.3649 (3)0.2686 (3)0.3112 (3)0.0554 (9)
H2W10.30180.23700.29980.066*
H2W20.33760.34070.31490.066*
O20.2233 (3)0.0263 (4)0.2267 (3)0.0784 (12)
O30.1111 (4)0.0285 (6)0.0756 (4)0.107 (2)
O40.1792 (4)0.2017 (5)0.1484 (4)0.0996 (18)
N10.4417 (3)0.1042 (3)0.1501 (3)0.0394 (8)
N20.1708 (3)0.0851 (5)0.1490 (3)0.0649 (13)
C10.3828 (4)0.1087 (6)0.0491 (4)0.0585 (12)
H10.36460.18690.01760.070*
C20.3481 (5)0.0028 (7)−0.0099 (4)0.0761 (15)
H20.30860.0097−0.08020.091*
C30.3716 (5)−0.1113 (6)0.0347 (5)0.0735 (14)
H30.3470−0.1836−0.00400.088*
C40.4336 (4)−0.1200 (4)0.1406 (4)0.0515 (11)
C50.4673 (3)−0.0087 (4)0.1946 (3)0.0353 (8)
C60.4594 (3)−0.2412 (4)0.1964 (4)0.0679 (14)
U11U22U33U12U13U23
Co10.0443 (5)0.0219 (4)0.0489 (5)0.0000.0149 (4)0.000
O1W0.094 (3)0.0341 (16)0.065 (2)−0.0210 (17)0.0333 (19)−0.0165 (15)
O10.133 (4)0.047 (2)0.169 (4)−0.030 (2)0.080 (3)−0.043 (2)
O2W0.0501 (18)0.0530 (19)0.069 (2)0.0035 (14)0.0271 (17)0.0139 (16)
O20.075 (3)0.090 (3)0.065 (2)0.006 (2)0.010 (2)0.033 (2)
O30.092 (3)0.166 (6)0.058 (3)−0.050 (3)0.011 (2)0.001 (3)
O40.079 (3)0.089 (3)0.125 (4)−0.014 (3)0.016 (3)0.063 (3)
N10.0454 (18)0.0375 (18)0.0322 (16)−0.0019 (15)0.0046 (14)0.0049 (14)
N20.048 (2)0.092 (4)0.054 (2)−0.014 (2)0.0108 (19)0.027 (2)
C10.052 (2)0.079 (3)0.039 (2)−0.004 (2)0.0033 (18)0.010 (2)
C20.066 (3)0.117 (4)0.042 (2)−0.025 (3)0.007 (2)−0.015 (2)
C30.074 (3)0.090 (3)0.062 (3)−0.036 (3)0.028 (2)−0.041 (2)
C40.060 (3)0.047 (2)0.057 (2)−0.0194 (19)0.0323 (19)−0.0230 (18)
C50.0425 (19)0.0318 (18)0.0342 (19)−0.0051 (15)0.0143 (16)−0.0032 (14)
C60.083 (3)0.036 (2)0.104 (4)−0.012 (2)0.059 (3)−0.0202 (19)
Co1—O1W2.084 (3)O4—N21.245 (7)
Co1—O1Wi2.084 (3)N1—C51.338 (5)
Co1—O2W2.091 (3)N1—C11.340 (5)
Co1—O2Wi2.091 (3)C1—C21.372 (9)
Co1—N12.121 (3)C1—H10.9300
Co1—N1i2.121 (3)C2—C31.346 (10)
O1W—H1W10.8500C2—H20.9300
O1W—H1W20.8502C3—C41.408 (8)
O1—C61.208 (6)C3—H30.9300
O2W—H2W10.8501C4—C51.388 (6)
O2W—H2W20.8500C4—C61.476 (7)
O2—N21.232 (6)C5—C5i1.473 (8)
O3—N21.218 (6)C6—C6i1.511 (10)
O1W—Co1—O1Wi90.1 (2)C1—N1—Co1126.6 (3)
O1W—Co1—O2W88.21 (14)O3—N2—O2119.6 (6)
O1Wi—Co1—O2W88.18 (14)O3—N2—O4121.7 (5)
O1W—Co1—O2Wi88.18 (14)O2—N2—O4118.7 (5)
O1Wi—Co1—O2Wi88.21 (14)N1—C1—C2122.7 (5)
O2W—Co1—O2Wi174.89 (19)N1—C1—H1118.7
O1W—Co1—N1173.05 (14)C2—C1—H1118.7
O1Wi—Co1—N196.32 (15)C3—C2—C1119.6 (5)
O2W—Co1—N194.55 (14)C3—C2—H2120.2
O2Wi—Co1—N189.44 (13)C1—C2—H2120.2
O1W—Co1—N1i96.32 (15)C2—C3—C4119.4 (5)
O1Wi—Co1—N1i173.05 (14)C2—C3—H3120.3
O2W—Co1—N1i89.44 (13)C4—C3—H3120.3
O2Wi—Co1—N1i94.55 (14)C5—C4—C3117.7 (5)
N1—Co1—N1i77.36 (18)C5—C4—C6119.6 (4)
Co1—O1W—H1W1125.1C3—C4—C6122.7 (4)
Co1—O1W—H1W2123.5N1—C5—C4122.4 (4)
H1W1—O1W—H1W2110.1N1—C5—C5i116.1 (2)
Co1—O2W—H2W1139.2C4—C5—C5i121.5 (3)
Co1—O2W—H2W2117.1O1—C6—C4121.8 (5)
H2W1—O2W—H2W289.0O1—C6—C6i119.7 (4)
C5—N1—C1118.2 (4)C4—C6—C6i118.0 (3)
C5—N1—Co1115.2 (2)
O1Wi—Co1—N1—C5−176.8 (3)C2—C3—C4—C6177.7 (5)
O2W—Co1—N1—C5−88.2 (3)C1—N1—C5—C4−1.0 (6)
O2Wi—Co1—N1—C595.0 (3)Co1—N1—C5—C4178.8 (3)
N1i—Co1—N1—C50.2 (2)C1—N1—C5—C5i179.6 (4)
O1Wi—Co1—N1—C12.9 (4)Co1—N1—C5—C5i−0.6 (5)
O2W—Co1—N1—C191.6 (4)C3—C4—C5—N10.8 (6)
O2Wi—Co1—N1—C1−85.2 (4)C6—C4—C5—N1−176.5 (4)
N1i—Co1—N1—C1180.0 (5)C3—C4—C5—C5i−179.8 (5)
C5—N1—C1—C2−0.1 (7)C6—C4—C5—C5i2.9 (7)
Co1—N1—C1—C2−179.8 (4)C5—C4—C6—O1175.7 (3)
N1—C1—C2—C31.3 (9)C3—C4—C6—O1−1.4 (6)
C1—C2—C3—C4−1.5 (9)C5—C4—C6—C6i−12.2 (6)
C2—C3—C4—C50.5 (8)C3—C4—C6—C6i170.7 (4)
D—H···AD—HH···AD···AD—H···A
O2W—H2W1···O40.852.212.834 (6)130
O2W—H2W2···O2ii0.852.142.957 (6)161
O1W—H1W1···O1iii0.852.002.793 (5)154
O1W—H1W2···O3iv0.852.192.864 (6)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2W—H2W1⋯O40.852.212.834 (6)130
O2W—H2W2⋯O2i0.852.142.957 (6)161
O1W—H1W1⋯O1ii0.852.002.793 (5)154
O1W—H1W2⋯O3iii0.852.192.864 (6)136

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  Synthesis, Characterization, and Spectroscopy of Dipyridocatecholate Complexes of Platinum.

Authors:  Witold Paw; Richard Eisenberg
Journal:  Inorg Chem       Date:  1997-05-21       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Sensitised near-infrared emission from lanthanides using a covalently-attached Pt(II) fragment as an antenna group.

Authors:  Nail M Shavaleev; Lucy P Moorcraft; Simon J A Pope; Zöe R Bell; Stephen Faulkner; Michael D Ward
Journal:  Chem Commun (Camb)       Date:  2003-05-21       Impact factor: 6.222

4.  Hydrogen-bonding and pi-pi stacking interactions in aquachloridobis(1,10-phenanthroline)cobalt(II) chloride dichloridobis(1,10-phenanthroline)cobalt(II) hexahydrate.

Authors:  Janice M Rubin-Preminger; Leonid Kozlov; Israel Goldberg
Journal:  Acta Crystallogr C       Date:  2008-01-12       Impact factor: 1.172

  4 in total
  2 in total

1.  Tetra-aqua-(5,5'-dimethyl-2,2'-bipyridine-κN,N')zinc(II) sulfate.

Authors:  Qing-Lan Zhao; Hui-Feng Bai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-04

2.  Aqua-bis(benzoato-κO)(5,5'-dimethyl-2,2'-bipyridine-κN,N')copper(II).

Authors:  Xi-Yan Dong; Xiaojie Xu; Lei Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.