Literature DB >> 21583005

trans-Bis(5-carb-oxy-2-methyl-1H-imidazole-4-carboxyl-ato-κN,O)copper(II).

Xin Guo1, Yi Liang Li, Ju Xian Wang, Yu Cheng Wang.   

Abstract

In the title compound, [Cu(C(6)H(5)N(2)O(4))(2)], the copper(II) atom lies on an inversion centre and is in an N(2)O(2) four-coordinate environment with a nearly regular square-planar geometry. An extended network of intra-molecular O-H⋯O and inter-molecular N-H⋯O and C-H⋯O hydrogen bonds stabil-izes the crystal structure.

Entities:  

Year:  2009        PMID: 21583005      PMCID: PMC2969817          DOI: 10.1107/S1600536809016791

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and crystal structure of metal complexes with N-heterocyclic carboxylic acids, see: Nie et al. (2007 ▶); Liang et al. (2002 ▶); Net et al. (1989 ▶); Zeng et al. (2008 ▶).

Experimental

Crystal data

[Cu(C6H5N2O4)2] M = 401.78 Monoclinic, a = 7.3780 (17) Å b = 7.575 (2) Å c = 12.863 (3) Å β = 101.287 (13)° V = 705.0 (3) Å3 Z = 2 Mo Kα radiation μ = 1.61 mm−1 T = 292 K 0.30 × 0.25 × 0.20 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.638, T max = 0.727 5198 measured reflections 1609 independent reflections 1472 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.084 S = 1.07 1609 reflections 116 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.66 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL/PC. Crystal structure: contains datablocks I, New_Global_Publ_Block. DOI: 10.1107/S1600536809016791/rz2318sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809016791/rz2318Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C6H5N2O4)2]F(000) = 406
Mr = 401.78Dx = 1.893 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2111 reflections
a = 7.3780 (17) Åθ = 3.1–27.5°
b = 7.575 (2) ŵ = 1.61 mm1
c = 12.863 (3) ÅT = 292 K
β = 101.287 (13)°Prism, blue
V = 705.0 (3) Å30.30 × 0.25 × 0.20 mm
Z = 2
Rigaku SCXmini diffractometer1609 independent reflections
Radiation source: fine-focus sealed tube1472 reflections with I > 2σ(I)
graphiteRint = 0.019
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −9→8
Tmin = 0.638, Tmax = 0.727l = −16→16
5198 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0506P)2 + 0.3299P] where P = (Fo2 + 2Fc2)/3
1609 reflections(Δ/σ)max < 0.001
116 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.66 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.00000.50000.00000.02591 (14)
C10.3363 (3)0.5580 (3)0.26068 (15)0.0322 (4)
H1A0.42010.65620.27250.048*
H1B0.35750.48280.32190.048*
H1C0.21140.60050.24820.048*
C20.3672 (2)0.4571 (3)0.16737 (14)0.0222 (4)
C30.3316 (2)0.3269 (2)0.01393 (13)0.0211 (3)
C40.5089 (2)0.2949 (2)0.06414 (13)0.0221 (4)
C50.6677 (3)0.2144 (3)0.02784 (15)0.0267 (4)
C60.2221 (2)0.2795 (3)−0.09127 (14)0.0241 (4)
N10.24525 (19)0.4288 (2)0.07763 (11)0.0216 (3)
N20.5278 (2)0.3781 (2)0.16036 (11)0.0226 (3)
H2A0.62660.37960.20860.027*
O10.06229 (18)0.3460 (2)−0.11265 (10)0.0328 (3)
O20.29058 (19)0.1816 (2)−0.15194 (10)0.0325 (3)
O30.6306 (2)0.1289 (2)−0.06309 (11)0.0362 (4)
H3A0.51020.1358−0.09720.054*
O40.8232 (2)0.2331 (2)0.07777 (12)0.0396 (4)
U11U22U33U12U13U23
Cu10.01512 (18)0.0374 (2)0.02196 (19)0.00490 (12)−0.00433 (12)−0.00595 (12)
C10.0263 (10)0.0449 (12)0.0231 (9)0.0015 (9)−0.0008 (7)−0.0072 (8)
C20.0190 (8)0.0268 (9)0.0190 (8)−0.0015 (7)−0.0004 (6)0.0029 (7)
C30.0172 (8)0.0242 (9)0.0205 (8)−0.0010 (6)0.0000 (6)0.0001 (6)
C40.0189 (8)0.0240 (9)0.0217 (8)0.0008 (7)−0.0001 (6)0.0029 (7)
C50.0210 (8)0.0291 (10)0.0294 (9)0.0036 (7)0.0034 (7)0.0054 (7)
C60.0201 (8)0.0304 (10)0.0196 (8)−0.0010 (7)−0.0013 (6)−0.0023 (7)
N10.0165 (7)0.0275 (8)0.0190 (7)0.0003 (6)−0.0013 (5)−0.0017 (6)
N20.0172 (7)0.0294 (8)0.0184 (7)0.0003 (6)−0.0038 (5)0.0025 (6)
O10.0206 (7)0.0470 (9)0.0263 (7)0.0062 (6)−0.0065 (5)−0.0103 (6)
O20.0252 (7)0.0441 (8)0.0256 (7)0.0036 (6)−0.0010 (5)−0.0113 (6)
O30.0273 (7)0.0465 (9)0.0342 (8)0.0079 (6)0.0047 (6)−0.0077 (6)
O40.0196 (7)0.0569 (10)0.0390 (8)0.0073 (7)−0.0025 (6)0.0007 (7)
Cu1—N11.9633 (15)C3—N11.370 (2)
Cu1—N1i1.9633 (15)C3—C61.478 (2)
Cu1—O11.9830 (14)C4—N21.372 (2)
Cu1—O1i1.9830 (14)C4—C51.475 (3)
C1—C21.478 (3)C5—O41.208 (2)
C1—H1A0.9600C5—O31.318 (2)
C1—H1B0.9600C6—O21.252 (2)
C1—H1C0.9600C6—O11.262 (2)
C2—N11.335 (2)N2—H2A0.8600
C2—N21.346 (2)O3—H3A0.9117
C3—C41.363 (2)
N1—Cu1—N1i180.0C3—C4—N2105.31 (15)
N1—Cu1—O183.56 (6)C3—C4—C5132.21 (17)
N1i—Cu1—O196.44 (6)N2—C4—C5121.95 (16)
N1—Cu1—O1i96.44 (6)O4—C5—O3122.69 (18)
N1i—Cu1—O1i83.56 (6)O4—C5—C4120.88 (18)
O1—Cu1—O1i180.00 (5)O3—C5—C4116.37 (16)
C2—C1—H1A109.5O2—C6—O1125.06 (16)
C2—C1—H1B109.5O2—C6—C3119.96 (16)
H1A—C1—H1B109.5O1—C6—C3114.98 (16)
C2—C1—H1C109.5C2—N1—C3107.11 (14)
H1A—C1—H1C109.5C2—N1—Cu1142.56 (13)
H1B—C1—H1C109.5C3—N1—Cu1109.91 (11)
N1—C2—N2108.89 (16)C2—N2—C4109.26 (14)
N1—C2—C1126.93 (17)C2—N2—H2A125.4
N2—C2—C1124.18 (16)C4—N2—H2A125.4
C4—C3—N1109.42 (15)C6—O1—Cu1114.58 (11)
C4—C3—C6133.84 (17)C5—O3—H3A114.3
N1—C3—C6116.72 (15)
N1—C3—C4—N20.6 (2)C4—C3—N1—C2−1.1 (2)
C6—C3—C4—N2178.80 (19)C6—C3—N1—C2−179.58 (16)
N1—C3—C4—C5−170.85 (19)C4—C3—N1—Cu1173.21 (12)
C6—C3—C4—C57.3 (4)C6—C3—N1—Cu1−5.3 (2)
C3—C4—C5—O4163.5 (2)O1—Cu1—N1—C2175.3 (2)
N2—C4—C5—O4−6.8 (3)O1i—Cu1—N1—C2−4.7 (2)
C3—C4—C5—O3−13.6 (3)O1—Cu1—N1—C34.36 (12)
N2—C4—C5—O3176.04 (17)O1i—Cu1—N1—C3−175.64 (12)
C4—C3—C6—O24.4 (3)N1—C2—N2—C4−0.7 (2)
N1—C3—C6—O2−177.58 (17)C1—C2—N2—C4179.41 (18)
C4—C3—C6—O1−174.8 (2)C3—C4—N2—C20.0 (2)
N1—C3—C6—O13.2 (3)C5—C4—N2—C2172.59 (17)
N2—C2—N1—C31.1 (2)O2—C6—O1—Cu1−178.45 (16)
C1—C2—N1—C3−179.04 (19)C3—C6—O1—Cu10.7 (2)
N2—C2—N1—Cu1−170.06 (15)N1—Cu1—O1—C6−2.89 (14)
C1—C2—N1—Cu19.8 (4)N1i—Cu1—O1—C6177.11 (14)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O2ii0.862.012.822 (2)157
C1—H1A···O4iii0.962.493.217 (2)132
C1—H1B···O3iv0.962.583.285 (3)130
C1—H1C···O1i0.962.433.258 (3)144
O3—H3A···O20.911.672.576 (2)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O2i0.862.012.822 (2)157
C1—H1A⋯O4ii0.962.493.217 (2)132
C1—H1B⋯O3iii0.962.583.285 (3)130
C1—H1C⋯O1iv0.962.433.258 (3)144
O3—H3A⋯O20.911.672.576 (2)171

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diaqua-bis(5-carb-oxy-2-methyl-1H-imidazole-4-carboxyl-ato-κN,O)manganese(II).

Authors:  Jian-Zhong Zeng; Xiu-Guang Yi; Jun-Yue Lin; Shao-Ming Ying; Gan-Sheng Huang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-15
  2 in total

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