Literature DB >> 21582827

4-Chloro-N-cyclo-hexyl-benzamide.

Aamer Saeed, Rasheed Ahmad Khera, Muhammad Latif, Masood Parvez.   

Abstract

In the title compound, C(13)H(16)ClNO, the cyclo-hexyl ring adopts a chair conformation, with puckering parameters Q = 0.576 (3) Å, θ = 0.1 (3) and ϕ = 8 (15)°. In the crystal structure, inter-molecular N-H⋯O hydrogen bonds link mol-ecules into one-dimensional chains propagating in [010].

Entities:  

Year:  2009        PMID: 21582827      PMCID: PMC2969216          DOI: 10.1107/S1600536809021217

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of N-substituted benzamides, see: Beccalli et al. (2005 ▶); Calderone et al. (2006 ▶); Vega-Noverola et al. (1989 ▶); Zhichkin et al. (2007 ▶); Lindgren et al. (2001 ▶); Olsson et al. (2002 ▶). For related crystal structures, see: Jones & Kuś (2004 ▶); Saeed et al. (2008 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C13H16ClNO M = 237.72 Monoclinic, a = 14.755 (14) Å b = 5.043 (7) Å c = 16.818 (16) Å β = 96.13 (6)° V = 1244 (2) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 173 K 0.12 × 0.08 × 0.06 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1997 ▶) T min = 0.967, T max = 0.983 3651 measured reflections 2388 independent reflections 1497 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.151 S = 1.06 2388 reflections 145 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.21 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809021217/lh2834sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809021217/lh2834Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16ClNOF(000) = 504
Mr = 237.72Dx = 1.269 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3651 reflections
a = 14.755 (14) Åθ = 3.9–26.0°
b = 5.043 (7) ŵ = 0.29 mm1
c = 16.818 (16) ÅT = 173 K
β = 96.13 (6)°Needle, colorless
V = 1244 (2) Å30.12 × 0.08 × 0.06 mm
Z = 4
Bruker APEXII CCD diffractometer2388 independent reflections
Radiation source: fine-focus sealed tube1497 reflections with I > 2σ(I)
graphiteRint = 0.034
φ and ω scansθmax = 26.0°, θmin = 3.9°
Absorption correction: multi-scan (SORTAV; Blessing, 1997)h = −18→17
Tmin = 0.967, Tmax = 0.983k = −6→4
3651 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0665P)2 + 0.3764P] where P = (Fo2 + 2Fc2)/3
2388 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.77571 (5)0.29595 (19)0.35603 (5)0.0739 (3)
O10.35835 (12)0.8003 (3)0.37556 (11)0.0489 (5)
N10.32675 (14)0.3654 (4)0.38965 (14)0.0491 (6)
H10.34920.20360.39220.059*
C10.48155 (15)0.4944 (5)0.37540 (13)0.0369 (6)
C20.52269 (17)0.2853 (5)0.41805 (15)0.0462 (6)
H20.48840.18130.45120.055*
C30.61349 (18)0.2254 (6)0.41296 (16)0.0529 (7)
H30.64190.08310.44310.063*
C40.66205 (17)0.3746 (6)0.36373 (15)0.0489 (7)
C50.62262 (18)0.5866 (6)0.32108 (16)0.0539 (7)
H50.65690.68950.28760.065*
C60.53255 (18)0.6464 (5)0.32789 (15)0.0474 (6)
H60.50510.79380.29960.057*
C70.38370 (16)0.5666 (5)0.38013 (13)0.0388 (6)
C80.22970 (16)0.3992 (5)0.39603 (16)0.0484 (7)
H80.21810.59120.40580.058*
C90.20142 (17)0.2430 (7)0.46572 (16)0.0564 (8)
H9A0.23710.30250.51570.068*
H9B0.21420.05240.45820.068*
C100.0997 (2)0.2819 (9)0.4724 (2)0.0789 (11)
H10A0.08160.17310.51710.095*
H10B0.08810.47020.48450.095*
C110.04290 (19)0.2051 (7)0.3968 (2)0.0735 (10)
H11A−0.02210.24210.40220.088*
H11B0.04940.01260.38750.088*
C120.0718 (2)0.3567 (8)0.3267 (2)0.0819 (11)
H12A0.05880.54760.33330.098*
H12B0.03600.29490.27700.098*
C130.1742 (2)0.3193 (7)0.31917 (18)0.0699 (9)
H13A0.18640.13130.30720.084*
H13B0.19200.42890.27460.084*
U11U22U33U12U13U23
Cl10.0443 (4)0.0948 (7)0.0840 (6)0.0035 (4)0.0128 (4)−0.0220 (5)
O10.0535 (11)0.0273 (9)0.0662 (12)0.0040 (8)0.0080 (9)0.0016 (8)
N10.0406 (11)0.0278 (12)0.0806 (15)0.0040 (9)0.0135 (11)0.0015 (10)
C10.0413 (12)0.0304 (12)0.0393 (12)−0.0013 (10)0.0055 (10)−0.0056 (10)
C20.0445 (13)0.0408 (14)0.0535 (15)0.0020 (12)0.0069 (11)0.0053 (12)
C30.0475 (15)0.0517 (17)0.0589 (16)0.0078 (13)0.0025 (12)0.0025 (14)
C40.0410 (13)0.0589 (18)0.0472 (14)−0.0017 (13)0.0063 (11)−0.0165 (13)
C50.0550 (16)0.0583 (18)0.0510 (15)−0.0079 (14)0.0183 (13)−0.0018 (14)
C60.0527 (15)0.0415 (16)0.0486 (14)−0.0019 (12)0.0086 (12)0.0051 (12)
C70.0462 (14)0.0305 (14)0.0399 (13)0.0006 (11)0.0058 (10)−0.0009 (10)
C80.0396 (13)0.0292 (13)0.0768 (18)0.0047 (11)0.0074 (13)−0.0048 (13)
C90.0407 (14)0.078 (2)0.0518 (15)0.0046 (14)0.0100 (12)−0.0119 (14)
C100.0473 (16)0.113 (3)0.080 (2)0.0028 (18)0.0212 (15)−0.016 (2)
C110.0400 (15)0.067 (2)0.113 (3)−0.0003 (14)0.0070 (17)−0.018 (2)
C120.0597 (19)0.088 (3)0.091 (2)0.0080 (18)−0.0240 (17)−0.005 (2)
C130.0609 (18)0.088 (2)0.0589 (17)0.0027 (17)−0.0039 (14)0.0122 (17)
Cl1—C41.742 (3)C8—C131.510 (4)
O1—C71.236 (3)C8—H81.0000
N1—C71.338 (3)C9—C101.530 (4)
N1—C81.457 (3)C9—H9A0.9900
N1—H10.8800C9—H9B0.9900
C1—C21.379 (4)C10—C111.496 (5)
C1—C61.386 (3)C10—H10A0.9900
C1—C71.499 (3)C10—H10B0.9900
C2—C31.385 (4)C11—C121.505 (5)
C2—H20.9500C11—H11A0.9900
C3—C41.375 (4)C11—H11B0.9900
C3—H30.9500C12—C131.541 (4)
C4—C51.381 (4)C12—H12A0.9900
C5—C61.379 (4)C12—H12B0.9900
C5—H50.9500C13—H13A0.9900
C6—H60.9500C13—H13B0.9900
C8—C91.508 (4)
C7—N1—C8123.7 (2)C8—C9—C10110.2 (2)
C7—N1—H1118.1C8—C9—H9A109.6
C8—N1—H1118.1C10—C9—H9A109.6
C2—C1—C6119.1 (2)C8—C9—H9B109.6
C2—C1—C7122.1 (2)C10—C9—H9B109.6
C6—C1—C7118.8 (2)H9A—C9—H9B108.1
C1—C2—C3120.6 (2)C11—C10—C9111.7 (3)
C1—C2—H2119.7C11—C10—H10A109.3
C3—C2—H2119.7C9—C10—H10A109.3
C4—C3—C2119.2 (3)C11—C10—H10B109.3
C4—C3—H3120.4C9—C10—H10B109.3
C2—C3—H3120.4H10A—C10—H10B107.9
C3—C4—C5121.2 (3)C10—C11—C12110.8 (3)
C3—C4—Cl1119.2 (2)C10—C11—H11A109.5
C5—C4—Cl1119.6 (2)C12—C11—H11A109.5
C6—C5—C4118.8 (2)C10—C11—H11B109.5
C6—C5—H5120.6C12—C11—H11B109.5
C4—C5—H5120.6H11A—C11—H11B108.1
C5—C6—C1121.0 (3)C11—C12—C13111.3 (3)
C5—C6—H6119.5C11—C12—H12A109.4
C1—C6—H6119.5C13—C12—H12A109.4
O1—C7—N1122.7 (2)C11—C12—H12B109.4
O1—C7—C1121.0 (2)C13—C12—H12B109.4
N1—C7—C1116.3 (2)H12A—C12—H12B108.0
N1—C8—C9110.6 (2)C8—C13—C12110.1 (3)
N1—C8—C13110.7 (2)C8—C13—H13A109.6
C9—C8—C13110.9 (2)C12—C13—H13A109.6
N1—C8—H8108.2C8—C13—H13B109.6
C9—C8—H8108.2C12—C13—H13B109.6
C13—C8—H8108.2H13A—C13—H13B108.1
C6—C1—C2—C3−0.7 (4)C6—C1—C7—O1−32.8 (3)
C7—C1—C2—C3−179.3 (2)C2—C1—C7—N1−34.0 (3)
C1—C2—C3—C4−1.0 (4)C6—C1—C7—N1147.4 (2)
C2—C3—C4—C51.7 (4)C7—N1—C8—C9−132.2 (3)
C2—C3—C4—Cl1−178.9 (2)C7—N1—C8—C13104.5 (3)
C3—C4—C5—C6−0.6 (4)N1—C8—C9—C10179.5 (2)
Cl1—C4—C5—C6−180.0 (2)C13—C8—C9—C10−57.3 (3)
C4—C5—C6—C1−1.2 (4)C8—C9—C10—C1156.9 (4)
C2—C1—C6—C51.8 (4)C9—C10—C11—C12−56.0 (4)
C7—C1—C6—C5−179.5 (2)C10—C11—C12—C1355.5 (4)
C8—N1—C7—O1−0.3 (4)N1—C8—C13—C12−179.8 (3)
C8—N1—C7—C1179.5 (2)C9—C8—C13—C1257.0 (3)
C2—C1—C7—O1145.9 (2)C11—C12—C13—C8−56.1 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.882.062.901 (5)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.882.062.901 (5)160

Symmetry code: (i) .

  7 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Heterocyclic analogs of benzanilide derivatives as potassium channel activators. IX.

Authors:  Vincenzo Calderone; Francesca Lidia Fiamingo; Irene Giorgi; Michele Leonardi; Oreste Livi; Alma Martelli; Enrica Martinotti
Journal:  Eur J Med Chem       Date:  2006-04-19       Impact factor: 6.514

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  N-substituted benzamides inhibit nuclear factor-kappaB and nuclear factor of activated T cells activity while inducing activator protein 1 activity in T lymphocytes.

Authors:  H Lindgren; R W Pero; F Ivars; T Leanderson
Journal:  Mol Immunol       Date:  2001-08       Impact factor: 4.407

5.  2,4-Dichloro-N-cyclo-hexyl-benzamide.

Authors:  Aamer Saeed; Naeem Abbas; Shahid Hussain; Ulrich Flörke
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-02

6.  A novel highly stereoselective synthesis of 2,3-disubstituted 3H-quinazoline-4-one derivatives.

Authors:  Paul Zhichkin; Edward Kesicki; Jennifer Treiberg; Lisa Bourdon; Matthew Ronsheim; Hua Chee Ooi; Stephen White; Angela Judkins; David Fairfax
Journal:  Org Lett       Date:  2007-03-10       Impact factor: 6.005

7.  Mechanism of action for N-substituted benzamide-induced apoptosis.

Authors:  A R Olsson; H Lindgren; R W Pero; T Leanderson
Journal:  Br J Cancer       Date:  2002-03-18       Impact factor: 7.640

  7 in total

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