Literature DB >> 21582795

Ethyl 2-(3-chloro-2-pyridyl)-5-oxopyrazolidine-3-carboxylate.

Hai-Jun Tan, Hai-Bing He, Ming Xia, Xiang-Ning Zhang, Hong-Jun Zhu.   

Abstract

In the mol-ecule of the title compound, C(11)H(12)ClN(3)O(3), the five membered ring adopts an envelope conformation. In the crystal structure, inter-molecular N-H⋯O hydrogen bonds link the mol-ecules into centrosymmetric dimers.

Entities:  

Year:  2009        PMID: 21582795      PMCID: PMC2969336          DOI: 10.1107/S1600536809020789

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthetic procedure, see: Lahm et al. (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C11H12ClN3O3 M = 269.69 Orthorhombic, a = 15.488 (3) Å b = 10.009 (2) Å c = 16.249 (3) Å V = 2518.9 (8) Å3 Z = 8 Mo Kα radiation μ = 0.31 mm−1 T = 298 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.913, T max = 0.970 4453 measured reflections 2273 independent reflections 1635 reflections with I > 2σ(I) R int = 0.029 3 standard reflections frequency: 120 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.110 S = 1.03 2273 reflections 164 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809020789/hk2697sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020789/hk2697Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12ClN3O3F(000) = 1120
Mr = 269.69Dx = 1.422 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 25 reflections
a = 15.488 (3) Åθ = 0.9–1.0°
b = 10.009 (2) ŵ = 0.31 mm1
c = 16.249 (3) ÅT = 298 K
V = 2518.9 (8) Å3Block, colorless
Z = 80.30 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer1635 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.029
graphiteθmax = 25.3°, θmin = 2.5°
ω/2θ scansh = 0→18
Absorption correction: ψ scan (North et al., 1968)k = 0→12
Tmin = 0.913, Tmax = 0.970l = −19→19
4453 measured reflections3 standard reflections every 120 min
2273 independent reflections intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.110w = 1/[σ2(Fo2) + (0.0473P)2 + 0.824P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2273 reflectionsΔρmax = 0.29 e Å3
164 parametersΔρmin = −0.23 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0065 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl0.45523 (4)0.14184 (7)0.43566 (5)0.0629 (3)
O10.30427 (10)0.43898 (19)0.31272 (11)0.0561 (5)
O20.34478 (11)0.4578 (2)0.44373 (11)0.0597 (5)
O30.55616 (12)0.7407 (2)0.33051 (13)0.0667 (6)
N10.54947 (12)0.55100 (18)0.40815 (12)0.0372 (5)
H1A0.57760.58140.44970.045*
N20.51613 (11)0.41865 (17)0.40548 (11)0.0328 (4)
N30.66149 (12)0.3566 (2)0.37919 (13)0.0456 (5)
C10.1756 (2)0.3232 (4)0.3592 (2)0.0876 (11)
H1B0.11630.33580.37450.131*
H1C0.20690.28630.40490.131*
H1D0.17890.26310.31330.131*
C20.21401 (15)0.4539 (3)0.3359 (2)0.0666 (9)
H2A0.18200.49150.29020.080*
H2B0.20960.51520.38200.080*
C30.36204 (14)0.4419 (2)0.37295 (15)0.0389 (6)
C40.45184 (14)0.4216 (2)0.33772 (13)0.0363 (5)
H4A0.45420.33810.30630.044*
C50.48079 (15)0.5388 (3)0.28374 (15)0.0471 (6)
H5A0.51540.50780.23780.056*
H5B0.43150.58780.26270.056*
C60.53378 (15)0.6246 (3)0.34130 (15)0.0434 (6)
C70.58184 (14)0.3194 (2)0.39697 (13)0.0332 (5)
C80.72260 (16)0.2612 (3)0.37550 (18)0.0565 (8)
H8A0.77900.28720.36390.068*
C90.70658 (18)0.1279 (3)0.38781 (17)0.0548 (7)
H9A0.75090.06550.38420.066*
C100.62367 (17)0.0884 (3)0.40552 (16)0.0490 (6)
H10A0.6104−0.00130.41340.059*
C110.56048 (14)0.1858 (2)0.41127 (15)0.0389 (6)
U11U22U33U12U13U23
Cl0.0487 (4)0.0514 (4)0.0885 (6)−0.0128 (3)0.0079 (4)0.0135 (4)
O10.0322 (9)0.0815 (14)0.0546 (11)0.0039 (9)−0.0095 (8)−0.0041 (10)
O20.0367 (10)0.0944 (16)0.0479 (11)0.0071 (10)0.0002 (8)−0.0127 (11)
O30.0629 (12)0.0508 (12)0.0864 (16)−0.0110 (10)−0.0068 (10)0.0283 (11)
N10.0399 (10)0.0307 (10)0.0411 (11)−0.0008 (8)−0.0056 (9)−0.0020 (9)
N20.0301 (9)0.0308 (10)0.0374 (10)0.0009 (8)−0.0036 (8)−0.0011 (8)
N30.0314 (10)0.0402 (12)0.0650 (14)0.0003 (9)0.0035 (10)−0.0027 (10)
C10.0537 (19)0.097 (3)0.112 (3)−0.0200 (19)0.0081 (19)−0.017 (2)
C20.0295 (13)0.087 (2)0.084 (2)0.0059 (14)−0.0081 (14)−0.0055 (18)
C30.0339 (12)0.0399 (14)0.0429 (14)0.0027 (10)−0.0047 (11)−0.0039 (11)
C40.0342 (11)0.0409 (13)0.0339 (12)0.0046 (10)−0.0039 (9)−0.0051 (10)
C50.0389 (13)0.0647 (17)0.0377 (13)0.0061 (12)−0.0017 (10)0.0091 (12)
C60.0364 (13)0.0465 (16)0.0474 (15)0.0045 (11)0.0034 (11)0.0107 (12)
C70.0318 (11)0.0340 (12)0.0337 (12)0.0022 (10)−0.0027 (10)−0.0002 (10)
C80.0323 (12)0.0542 (18)0.083 (2)0.0046 (12)0.0019 (13)−0.0045 (15)
C90.0498 (16)0.0481 (16)0.0666 (19)0.0201 (13)−0.0077 (14)−0.0037 (13)
C100.0581 (16)0.0342 (13)0.0548 (15)0.0072 (13)−0.0068 (13)0.0069 (12)
C110.0379 (13)0.0351 (13)0.0439 (14)−0.0019 (10)−0.0037 (10)0.0032 (11)
Cl—C111.735 (2)C2—H2A0.9700
O1—C21.456 (3)C2—H2B0.9700
O1—C31.326 (3)C3—C41.518 (3)
O2—C31.191 (3)C4—C51.531 (3)
O3—C61.226 (3)C4—H4A0.9800
N1—N21.422 (2)C5—C61.512 (4)
N1—C61.335 (3)C5—H5A0.9700
N1—H1A0.8600C5—H5B0.9700
N2—C41.485 (3)C7—C111.396 (3)
N2—C71.429 (3)C8—C91.372 (4)
N3—C71.321 (3)C8—H8A0.9300
N3—C81.346 (3)C9—C101.374 (4)
C1—C21.485 (4)C9—H9A0.9300
C1—H1B0.9600C10—C111.385 (3)
C1—H1C0.9600C10—H10A0.9300
C1—H1D0.9600
C3—O1—C2117.0 (2)C3—C4—H4A110.1
N2—N1—H1A122.5C5—C4—H4A110.1
C6—N1—N2115.02 (19)C6—C5—C4103.85 (18)
C6—N1—H1A122.5C6—C5—H5A111.0
N1—N2—C7113.08 (17)C4—C5—H5A111.0
N1—N2—C4104.33 (16)C6—C5—H5B111.0
C7—N2—C4114.82 (17)C4—C5—H5B111.0
C7—N3—C8117.8 (2)H5A—C5—H5B109.0
C2—C1—H1B109.5O3—C6—N1126.0 (2)
C2—C1—H1C109.5O3—C6—C5127.1 (2)
H1B—C1—H1C109.5N1—C6—C5106.8 (2)
C2—C1—H1D109.5N3—C7—C11121.9 (2)
H1B—C1—H1D109.5N3—C7—N2119.3 (2)
H1C—C1—H1D109.5C11—C7—N2118.7 (2)
O1—C2—C1111.1 (2)N3—C8—C9123.8 (2)
O1—C2—H2A109.4N3—C8—H8A118.1
C1—C2—H2A109.4C9—C8—H8A118.1
O1—C2—H2B109.4C8—C9—C10118.6 (2)
C1—C2—H2B109.4C8—C9—H9A120.7
H2A—C2—H2B108.0C10—C9—H9A120.7
O2—C3—O1124.3 (2)C9—C10—C11118.2 (2)
O2—C3—C4126.0 (2)C9—C10—H10A120.9
O1—C3—C4109.70 (19)C11—C10—H10A120.9
N2—C4—C3109.73 (17)C10—C11—C7119.7 (2)
N2—C4—C5104.11 (18)C10—C11—Cl120.06 (19)
C3—C4—C5112.46 (19)C7—C11—Cl120.25 (17)
N2—C4—H4A110.1
C6—N1—N2—C7108.8 (2)C4—C5—C6—O3−164.6 (2)
C6—N1—N2—C4−16.6 (2)C4—C5—C6—N113.3 (2)
C3—O1—C2—C1−85.7 (3)C8—N3—C7—C11−0.3 (3)
C2—O1—C3—O2−1.2 (4)C8—N3—C7—N2176.9 (2)
C2—O1—C3—C4178.6 (2)N1—N2—C7—N3−10.9 (3)
N1—N2—C4—C3−97.1 (2)C4—N2—C7—N3108.6 (2)
C7—N2—C4—C3138.54 (19)N1—N2—C7—C11166.3 (2)
N1—N2—C4—C523.4 (2)C4—N2—C7—C11−74.1 (3)
C7—N2—C4—C5−100.9 (2)C7—N3—C8—C91.1 (4)
O2—C3—C4—N22.4 (3)N3—C8—C9—C10−0.5 (4)
O1—C3—C4—N2−177.44 (18)C8—C9—C10—C11−0.9 (4)
O2—C3—C4—C5−113.0 (3)C9—C10—C11—C71.7 (4)
O1—C3—C4—C567.2 (2)C9—C10—C11—Cl−178.6 (2)
N2—C4—C5—C6−22.5 (2)N3—C7—C11—C10−1.1 (4)
C3—C4—C5—C696.2 (2)N2—C7—C11—C10−178.3 (2)
N2—N1—C6—O3179.8 (2)N3—C7—C11—Cl179.22 (18)
N2—N1—C6—C51.8 (3)N2—C7—C11—Cl2.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.862.142.910 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.862.142.910 (3)149

Symmetry code: (i) .

  2 in total

1.  Rynaxypyr: a new insecticidal anthranilic diamide that acts as a potent and selective ryanodine receptor activator.

Authors:  George P Lahm; Thomas M Stevenson; Thomas P Selby; John H Freudenberger; Daniel Cordova; Lindsey Flexner; Cheryl A Bellin; Christine M Dubas; Ben K Smith; Kenneth A Hughes; J Gary Hollingshaus; Christopher E Clark; Eric A Benner
Journal:  Bioorg Med Chem Lett       Date:  2007-09-07       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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