Literature DB >> 21582752

(S)-1-(1-Ferrocenylmethyl-1H-benz-imidazol-2-yl)ethanol monohydrate.

Rong Xia1.   

Abstract

In the structure of the title compound, [Fe(C(5)H(5))(C(15)H(15)N(2)O)]·H(2)O, the unsubstituted cyclo-penta-diene (Cp) ring is disordered over two positions, with site-occupancy factors of 0.636 (12) and 0.364 (12). The dihedral angles between the planes of the substituted Cp ring and the major and minor components of the disordered ring are 0.8 (3) and 3.4 (6)°, respectively. The crystal packing is stabilized by inter-molecular O-H⋯O hydrogen bonds, forming zigzag chains running parallel to the a axis.

Entities:  

Year:  2009        PMID: 21582752      PMCID: PMC2969406          DOI: 10.1107/S1600536809023575

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of ferrocene compounds, see: Savage et al. (2006 ▶); Carr et al. (2001 ▶). For the biological and pharmaceutical activity of imidazole and benzimidazole derivatives, see: Matsuno et al. (2000 ▶); Garuti et al. (1999 ▶). For the synthesis and crystal structure of (±)-1-(1H-benzimidazol-2-yl)ethanol, see: Xia & Xu (2008 ▶).

Experimental

Crystal data

[Fe(C5H5)(C15H15N2O)]·H2O M = 378.25 Orthorhombic, a = 7.678 (5) Å b = 12.480 (8) Å c = 19.428 (12) Å V = 1862 (2) Å3 Z = 4 Mo Kα radiation μ = 0.83 mm−1 T = 293 K 0.40 × 0.35 × 0.30 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.724, T max = 0.785 19049 measured reflections 4236 independent reflections 3622 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.113 S = 1.05 4236 reflections 243 parameters 146 restraints H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 1811 Friedel pairs Flack parameter: 0.03 (2) Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809023575/rz2334sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809023575/rz2334Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Fe(C5H5)(C15H15N2O)]·H2OF(000) = 792
Mr = 378.25Dx = 1.349 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 4425 reflections
a = 7.678 (5) Åθ = 2.7–27.5°
b = 12.480 (8) ŵ = 0.83 mm1
c = 19.428 (12) ÅT = 293 K
V = 1862 (2) Å3Block, colourless
Z = 40.40 × 0.35 × 0.30 mm
Rigaku SCXmini diffractometer4236 independent reflections
Radiation source: fine-focus sealed tube3622 reflections with I > 2σ(I)
graphiteRint = 0.042
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 2.7°
ω scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −16→16
Tmin = 0.724, Tmax = 0.785l = −25→25
19049 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.113w = 1/[σ2(Fo2) + (0.0566P)2 + 0.1498P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
4236 reflectionsΔρmax = 0.32 e Å3
243 parametersΔρmin = −0.21 e Å3
146 restraintsAbsolute structure: Flack (1983), 1811 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.03 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Fe10.12377 (5)0.11965 (3)0.10136 (2)0.05548 (14)
C10.2965 (13)0.2388 (10)0.0874 (6)0.076 (2)0.636 (12)
H10.30400.30180.11280.092*0.636 (12)
C20.3868 (13)0.1411 (10)0.1064 (6)0.088 (2)0.636 (12)
H20.45820.13090.14450.105*0.636 (12)
C30.3440 (15)0.0626 (9)0.0545 (6)0.090 (2)0.636 (12)
H30.3799−0.00850.05190.108*0.636 (12)
C40.2340 (16)0.1193 (11)0.0081 (5)0.087 (2)0.636 (12)
H40.18880.0883−0.03160.104*0.636 (12)
C50.198 (2)0.2298 (13)0.0278 (7)0.081 (2)0.636 (12)
H50.12780.28050.00630.097*0.636 (12)
C1'0.344 (2)0.218 (2)0.0982 (13)0.076 (2)0.364 (12)
H1'0.38150.26280.13330.092*0.364 (12)
C2'0.384 (3)0.104 (2)0.0815 (11)0.088 (2)0.364 (12)
H2'0.45990.05940.10590.105*0.364 (12)
C3'0.294 (3)0.0763 (17)0.0258 (12)0.090 (2)0.364 (12)
H3'0.30240.00820.00680.108*0.364 (12)
C4'0.187 (3)0.1529 (19)−0.0023 (11)0.087 (2)0.364 (12)
H4'0.10920.1521−0.03910.104*0.364 (12)
C5'0.236 (4)0.233 (2)0.0447 (15)0.081 (2)0.364 (12)
H5'0.19040.30090.03840.097*0.364 (12)
C60.0499 (5)0.0507 (3)0.19164 (17)0.0656 (8)
H60.12260.02770.22700.079*
C7−0.0067 (6)−0.0118 (3)0.1347 (2)0.0781 (10)
H70.0243−0.08250.12600.094*
C8−0.1161 (5)0.0507 (3)0.09454 (18)0.0714 (8)
H8−0.17170.02860.05440.086*
C9−0.1290 (4)0.1537 (3)0.12467 (16)0.0617 (7)
H9−0.19430.21080.10800.074*
C10−0.0239 (3)0.1541 (2)0.18508 (14)0.0490 (6)
C11−0.0006 (4)0.2455 (2)0.23385 (14)0.0553 (7)
H11A0.09890.23170.26330.066*
H11B0.02260.31050.20810.066*
C12−0.2966 (4)0.3248 (2)0.25873 (14)0.0531 (7)
C13−0.3238 (4)0.3941 (3)0.20362 (16)0.0636 (8)
H13A−0.24370.40090.16800.076*
C14−0.4778 (5)0.4525 (3)0.2051 (2)0.0791 (11)
H14A−0.50030.50080.16980.095*
C15−0.6005 (6)0.4410 (4)0.2581 (2)0.0918 (12)
H15A−0.70200.48180.25710.110*
C16−0.5738 (5)0.3712 (4)0.3111 (2)0.0827 (10)
H16A−0.65650.36280.34570.099*
C17−0.4184 (4)0.3126 (3)0.31211 (16)0.0632 (8)
C18−0.1993 (4)0.2124 (3)0.33753 (15)0.0601 (7)
C19−0.0719 (5)0.1412 (3)0.37575 (19)0.0757 (10)
H19A−0.00510.10040.34170.091*
C20−0.1628 (7)0.0627 (4)0.4224 (3)0.1130 (17)
H20A−0.07780.01860.44510.169*
H20B−0.23930.01830.39570.169*
H20C−0.22920.10110.45630.169*
N1−0.1568 (3)0.2606 (2)0.27640 (11)0.0538 (6)
N2−0.3554 (4)0.2401 (2)0.36061 (13)0.0683 (7)
O10.0467 (4)0.2076 (3)0.41300 (18)0.0971 (9)
H1''0.14410.18080.41200.146*
OW0.4102 (5)0.1890 (3)0.47061 (15)0.1251 (12)
HWB0.44400.25350.47460.188*
HWC0.39480.16210.51040.188*
U11U22U33U12U13U23
Fe10.0499 (2)0.0611 (2)0.0554 (2)0.0041 (2)0.01120 (19)0.0056 (2)
C10.042 (5)0.101 (5)0.086 (5)−0.012 (3)0.007 (4)0.018 (4)
C20.051 (2)0.129 (7)0.084 (6)0.007 (4)0.017 (4)0.021 (4)
C30.072 (6)0.119 (4)0.079 (6)0.029 (3)0.028 (4)0.005 (4)
C40.079 (7)0.124 (7)0.058 (4)0.009 (4)0.019 (3)0.016 (4)
C50.068 (7)0.104 (3)0.071 (7)−0.004 (4)0.012 (3)0.029 (4)
C1'0.042 (5)0.101 (5)0.086 (5)−0.012 (3)0.007 (4)0.018 (4)
C2'0.051 (2)0.129 (7)0.084 (6)0.007 (4)0.017 (4)0.021 (4)
C3'0.072 (6)0.119 (4)0.079 (6)0.029 (3)0.028 (4)0.005 (4)
C4'0.079 (7)0.124 (7)0.058 (4)0.009 (4)0.019 (3)0.016 (4)
C5'0.068 (7)0.104 (3)0.071 (7)−0.004 (4)0.012 (3)0.029 (4)
C60.0729 (19)0.0610 (17)0.0627 (18)0.0124 (15)0.0137 (16)0.0162 (15)
C70.099 (3)0.0551 (18)0.081 (2)−0.0086 (19)0.025 (2)−0.0063 (17)
C80.0674 (19)0.083 (2)0.0638 (18)−0.0155 (18)−0.002 (2)−0.0108 (17)
C90.0454 (14)0.083 (2)0.0564 (15)0.0054 (15)−0.0020 (13)−0.0046 (14)
C100.0421 (13)0.0572 (15)0.0476 (13)0.0021 (11)0.0044 (11)0.0056 (12)
C110.0479 (14)0.0623 (17)0.0559 (17)0.0006 (13)−0.0042 (12)0.0015 (14)
C120.0512 (15)0.0579 (16)0.0501 (15)0.0052 (13)−0.0090 (12)−0.0099 (12)
C130.0656 (18)0.0669 (19)0.0582 (16)0.0019 (15)−0.0125 (14)−0.0036 (15)
C140.080 (2)0.075 (2)0.082 (2)0.0162 (19)−0.033 (2)−0.0011 (19)
C150.077 (3)0.099 (3)0.099 (3)0.031 (2)−0.018 (2)−0.020 (2)
C160.066 (2)0.101 (3)0.081 (2)0.021 (2)0.0003 (18)−0.021 (2)
C170.0593 (18)0.0718 (19)0.0586 (17)0.0068 (14)−0.0012 (14)−0.0115 (16)
C180.071 (2)0.0627 (18)0.0471 (14)0.0018 (15)−0.0013 (14)−0.0036 (13)
C190.084 (2)0.077 (2)0.0655 (18)0.0096 (18)−0.0145 (18)0.0093 (17)
C200.129 (4)0.099 (3)0.111 (3)−0.020 (3)−0.046 (3)0.045 (3)
N10.0567 (14)0.0597 (13)0.0449 (11)0.0061 (11)−0.0005 (11)−0.0005 (10)
N20.0730 (17)0.0795 (17)0.0523 (13)0.0063 (15)0.0105 (14)−0.0061 (12)
O10.0643 (15)0.121 (2)0.106 (2)−0.0134 (15)−0.0203 (16)0.0323 (18)
OW0.124 (3)0.177 (3)0.0739 (17)0.012 (3)0.0232 (18)0.0031 (19)
Fe1—C5'1.98 (3)C7—C81.387 (5)
Fe1—C42.000 (10)C7—H70.9300
Fe1—C12.011 (12)C8—C91.416 (5)
Fe1—C72.029 (4)C8—H80.9300
Fe1—C102.029 (3)C9—C101.424 (4)
Fe1—C62.034 (3)C9—H90.9300
Fe1—C82.037 (4)C10—C111.494 (4)
Fe1—C92.038 (3)C11—N11.469 (4)
Fe1—C3'2.036 (17)C11—H11A0.9700
Fe1—C22.040 (10)C11—H11B0.9700
Fe1—C2'2.05 (2)C12—N11.383 (4)
Fe1—C32.048 (8)C12—C131.392 (4)
C1—C51.388 (12)C12—C171.404 (4)
C1—C21.451 (13)C13—C141.390 (5)
C1—H10.9300C13—H13A0.9300
C2—C31.444 (14)C14—C151.403 (6)
C2—H20.9300C14—H14A0.9300
C3—C41.423 (10)C15—C161.365 (6)
C3—H30.9300C15—H15A0.9300
C4—C51.46 (2)C16—C171.400 (5)
C4—H40.9300C16—H16A0.9300
C5—H50.9300C17—N21.393 (4)
C1'—C5'1.34 (2)C18—N21.325 (4)
C1'—C2'1.49 (3)C18—N11.370 (4)
C1'—H1'0.9300C18—C191.516 (5)
C2'—C3'1.33 (2)C19—O11.428 (5)
C2'—H2'0.9300C19—C201.507 (6)
C3'—C4'1.37 (2)C19—H19A0.9800
C3'—H3'0.9300C20—H20A0.9600
C4'—C5'1.40 (4)C20—H20B0.9600
C4'—H4'0.9300C20—H20C0.9600
C5'—H5'0.9300O1—H1''0.8200
C6—C101.415 (4)OW—HWB0.8501
C6—C71.421 (5)OW—HWC0.8500
C6—H60.9300
C5'—Fe1—C446.8 (9)Fe1—C1'—H1'125.5
C5'—Fe1—C127.6 (8)C3'—C2'—C1'108.2 (18)
C4—Fe1—C166.5 (5)C3'—C2'—Fe170.5 (12)
C5'—Fe1—C7165.0 (8)C1'—C2'—Fe170.4 (12)
C4—Fe1—C7119.8 (4)C3'—C2'—H2'125.9
C1—Fe1—C7165.2 (3)C1'—C2'—H2'125.9
C5'—Fe1—C10122.4 (9)Fe1—C2'—H2'124.8
C4—Fe1—C10164.4 (4)C2'—C3'—C4'117 (2)
C1—Fe1—C10108.7 (4)C2'—C3'—Fe171.4 (11)
C7—Fe1—C1068.85 (13)C4'—C3'—Fe173.6 (13)
C5'—Fe1—C6154.1 (8)C2'—C3'—H3'121.4
C4—Fe1—C6153.9 (4)C4'—C3'—H3'121.4
C1—Fe1—C6127.8 (4)Fe1—C3'—H3'125.2
C7—Fe1—C640.95 (14)C3'—C4'—C5'94.2 (18)
C10—Fe1—C640.76 (12)C3'—C4'—Fe167.7 (12)
C5'—Fe1—C8131.0 (7)C5'—C4'—Fe165.2 (16)
C4—Fe1—C8108.8 (4)C3'—C4'—H4'132.9
C1—Fe1—C8154.1 (3)C5'—C4'—H4'132.9
C7—Fe1—C839.88 (15)Fe1—C4'—H4'125.9
C10—Fe1—C868.68 (13)C1'—C5'—C4'125 (2)
C6—Fe1—C868.00 (15)C1'—C5'—Fe175.1 (16)
C5'—Fe1—C9112.9 (8)C4'—C5'—Fe174.9 (17)
C4—Fe1—C9127.2 (4)C1'—C5'—H5'117.5
C1—Fe1—C9120.3 (3)C4'—C5'—H5'117.5
C7—Fe1—C968.11 (16)Fe1—C5'—H5'124.1
C10—Fe1—C941.00 (11)C10—C6—C7107.9 (3)
C6—Fe1—C968.35 (13)C10—C6—Fe169.42 (17)
C8—Fe1—C940.68 (14)C7—C6—Fe169.3 (2)
C5'—Fe1—C3'60.7 (11)C10—C6—H6126.0
C4—Fe1—C3'22.4 (5)C7—C6—H6126.0
C1—Fe1—C3'71.2 (7)Fe1—C6—H6126.8
C7—Fe1—C3'109.4 (6)C8—C7—C6108.3 (3)
C10—Fe1—C3'172.7 (8)C8—C7—Fe170.4 (2)
C6—Fe1—C3'133.4 (7)C6—C7—Fe169.73 (19)
C8—Fe1—C3'114.8 (6)C8—C7—H7125.8
C9—Fe1—C3'145.6 (7)C6—C7—H7125.8
C5'—Fe1—C260.2 (7)Fe1—C7—H7125.6
C4—Fe1—C268.0 (4)C7—C8—C9108.7 (3)
C1—Fe1—C242.0 (3)C7—C8—Fe169.7 (2)
C7—Fe1—C2125.4 (3)C9—C8—Fe169.69 (19)
C10—Fe1—C2119.1 (4)C7—C8—H8125.7
C6—Fe1—C2106.9 (3)C9—C8—H8125.7
C8—Fe1—C2162.5 (4)Fe1—C8—H8126.5
C9—Fe1—C2154.8 (4)C8—C9—C10107.7 (3)
C3'—Fe1—C255.6 (6)C8—C9—Fe169.6 (2)
C5'—Fe1—C2'62.6 (10)C10—C9—Fe169.17 (17)
C4—Fe1—C2'54.3 (6)C8—C9—H9126.1
C1—Fe1—C2'53.3 (7)C10—C9—H9126.1
C7—Fe1—C2'117.7 (7)Fe1—C9—H9126.6
C10—Fe1—C2'135.9 (7)C6—C10—C9107.3 (3)
C6—Fe1—C2'113.2 (6)C6—C10—C11126.2 (3)
C8—Fe1—C2'146.1 (8)C9—C10—C11126.4 (3)
C9—Fe1—C2'173.2 (8)C6—C10—Fe169.82 (17)
C3'—Fe1—C2'38.1 (7)C9—C10—Fe169.83 (17)
C2—Fe1—C2'18.9 (6)C11—C10—Fe1127.10 (19)
C5'—Fe1—C369.0 (9)N1—C11—C10110.9 (2)
C4—Fe1—C341.1 (3)N1—C11—H11A109.5
C1—Fe1—C369.7 (5)C10—C11—H11A109.5
C7—Fe1—C3105.6 (3)N1—C11—H11B109.5
C10—Fe1—C3153.1 (4)C10—C11—H11B109.5
C6—Fe1—C3117.8 (4)H11A—C11—H11B108.1
C8—Fe1—C3124.8 (4)N1—C12—C13131.8 (3)
C9—Fe1—C3163.2 (4)N1—C12—C17105.7 (3)
C3'—Fe1—C319.7 (5)C13—C12—C17122.4 (3)
C2—Fe1—C341.4 (4)C14—C13—C12115.9 (3)
C2'—Fe1—C322.5 (5)C14—C13—H13A122.0
C5—C1—C2113.8 (11)C12—C13—H13A122.0
C5—C1—Fe172.1 (9)C13—C14—C15122.2 (4)
C2—C1—Fe170.1 (6)C13—C14—H14A118.9
C5—C1—H1123.1C15—C14—H14A118.9
C2—C1—H1123.1C16—C15—C14121.2 (4)
Fe1—C1—H1126.5C16—C15—H15A119.4
C3—C2—C1106.5 (8)C14—C15—H15A119.4
C3—C2—Fe169.6 (5)C15—C16—C17118.2 (4)
C1—C2—Fe168.0 (6)C15—C16—H16A120.9
C3—C2—H2126.8C17—C16—H16A120.9
C1—C2—H2126.8N2—C17—C16130.1 (3)
Fe1—C2—H2127.2N2—C17—C12109.8 (3)
C4—C3—C2103.9 (8)C16—C17—C12120.1 (3)
C4—C3—Fe167.6 (5)N2—C18—N1113.2 (3)
C2—C3—Fe169.0 (5)N2—C18—C19124.8 (3)
C4—C3—H3128.0N1—C18—C19121.9 (3)
C2—C3—H3128.0O1—C19—C20111.6 (3)
Fe1—C3—H3126.9O1—C19—C18108.6 (3)
C3—C4—C5114.6 (10)C20—C19—C18112.2 (4)
C3—C4—Fe171.2 (5)O1—C19—H19A108.1
C5—C4—Fe171.3 (8)C20—C19—H19A108.1
C3—C4—H4122.7C18—C19—H19A108.1
C5—C4—H4122.7C19—C20—H20A109.5
Fe1—C4—H4126.5C19—C20—H20B109.5
C1—C5—C4101.1 (10)H20A—C20—H20B109.5
C1—C5—Fe168.1 (8)C19—C20—H20C109.5
C4—C5—Fe166.7 (8)H20A—C20—H20C109.5
C1—C5—H5129.4H20B—C20—H20C109.5
C4—C5—H5129.4C18—N1—C12106.5 (2)
Fe1—C5—H5127.2C18—N1—C11128.8 (3)
C5'—C1'—C2'95 (2)C12—N1—C11124.6 (2)
C5'—C1'—Fe166.6 (17)C18—N2—C17104.7 (3)
C2'—C1'—Fe167.4 (12)C19—O1—H1''109.5
C5'—C1'—H1'132.3HWB—OW—HWC109.5
C2'—C1'—H1'132.3
D—H···AD—HH···AD···AD—H···A
OW—HWB···O1i0.852.372.806 (5)112
O1—H1''···OW0.822.343.016 (5)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
OW—HWB⋯O1i0.852.372.806 (5)112
O1—H1′′⋯OW0.822.343.016 (5)140

Symmetry code: (i) .

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