Literature DB >> 21202860

(±)-1-(1H-Benzimidazol-2-yl)ethanol.

Rong Xia1, Hai-Jun Xu.   

Abstract

The asymmetric unit of the title mol-ecule, C(9)H(10)N(2)O, contains two mol-ecules. The fused benzene and imidazole rings are nearly coplanar, the largest deviations from the mean plane being 0.025 (3) Å at the non-bridgehead imidazole C atom of one mol-ecule and 0.018 (3) Å at one of the bridgehead C atoms in the other mol-ecule. Intermolecular O-H⋯N and N-H⋯O hydrogen bonds result in the formation of a sheet parallel to the (010) plane.

Entities:  

Year:  2008        PMID: 21202860      PMCID: PMC2961813          DOI: 10.1107/S1600536808013871

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Allen et al. (1987 ▶); Chen & Ruan (2007 ▶); Garuti et al. (1999 ▶); Matsuno et al. (2000 ▶); Tlahuext et al. (2007 ▶).

Experimental

Crystal data

C9H10N2O M = 162.19 Orthorhombic, a = 13.734 (3) Å b = 15.376 (3) Å c = 7.9163 (16) Å V = 1671.7 (6) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.20 × 0.18 × 0.05 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.912, T max = 1.00 (expected range = 0.908–0.996) 17487 measured reflections 2199 independent reflections 1380 reflections with I > 2σ(I) R int = 0.115

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.123 S = 1.07 2199 reflections 221 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808013871/dn2341sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808013871/dn2341Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10N2OF000 = 688
Mr = 162.19Dx = 1.289 Mg m3
Orthorhombic, P21212Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2 2abCell parameters from 10749 reflections
a = 13.734 (3) Åθ = 2.4–28.0º
b = 15.376 (3) ŵ = 0.09 mm1
c = 7.9163 (16) ÅT = 293 (2) K
V = 1671.7 (6) Å3Block, red
Z = 80.20 × 0.18 × 0.05 mm
Rigaku Mercury2 diffractometer2199 independent reflections
Radiation source: fine-focus sealed tube1380 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.115
Detector resolution: 13.6612 pixels mm-1θmax = 27.5º
T = 293(2) Kθmin = 3.0º
ω scansh = −17→17
Absorption correction: multi-scan(CrystalClear; Rigaku, 2005)k = −19→19
Tmin = 0.912, Tmax = 1.00l = −10→10
17487 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.059H-atom parameters constrained
wR(F2) = 0.123  w = 1/[σ2(Fo2) + (0.0395P)2 + 0.22P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2199 reflectionsΔρmax = 0.17 e Å3
221 parametersΔρmin = −0.18 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6823 (3)0.3355 (2)1.1332 (4)0.0383 (9)
C20.7541 (3)0.3880 (2)1.1995 (5)0.0496 (10)
H2A0.81680.38851.15510.060*
C30.7292 (3)0.4388 (3)1.3323 (5)0.0605 (12)
H30.77600.47501.38010.073*
C40.6362 (4)0.4384 (3)1.3984 (6)0.0652 (13)
H4A0.62190.47401.49000.078*
C50.5647 (3)0.3868 (3)1.3328 (6)0.0622 (12)
H50.50210.38721.37740.075*
C60.5887 (3)0.3340 (2)1.1975 (5)0.0427 (9)
C70.5899 (3)0.2474 (2)0.9864 (5)0.0428 (9)
C80.5593 (3)0.1874 (3)0.8498 (5)0.0520 (11)
H80.48820.18230.85270.062*
C90.6018 (4)0.0985 (3)0.8690 (6)0.0919 (18)
H9A0.58320.06320.77430.138*
H9B0.57810.07250.97130.138*
H9C0.67150.10270.87370.138*
C100.3684 (3)0.3451 (2)0.6778 (5)0.0423 (9)
C110.4085 (3)0.3972 (3)0.8015 (5)0.0563 (11)
H110.47210.38880.83850.068*
C120.3517 (3)0.4614 (3)0.8676 (5)0.0614 (12)
H120.37680.49740.95140.074*
C130.2571 (3)0.4740 (3)0.8120 (5)0.0576 (11)
H130.22030.51860.85910.069*
C140.2166 (3)0.4234 (2)0.6914 (5)0.0511 (10)
H140.15270.43170.65610.061*
C150.2740 (3)0.3592 (2)0.6231 (4)0.0401 (9)
C160.3419 (2)0.2520 (2)0.4833 (4)0.0380 (8)
C170.3509 (3)0.1825 (2)0.3527 (4)0.0463 (10)
H170.29340.14500.36280.056*
C180.4389 (3)0.1262 (3)0.3790 (6)0.0581 (11)
H18A0.44140.08260.29240.087*
H18B0.43490.09860.48760.087*
H18C0.49650.16140.37390.087*
N10.68087 (19)0.27939 (19)0.9990 (3)0.0451 (8)
H1A0.72920.26690.93450.054*
N20.5316 (2)0.2773 (2)1.1042 (4)0.0486 (8)
N30.4093 (2)0.27755 (19)0.5867 (4)0.0443 (8)
N40.25902 (19)0.29851 (18)0.4998 (4)0.0425 (7)
H40.20630.29120.44290.051*
O10.58658 (16)0.2215 (2)0.6915 (3)0.0532 (7)
H10.53850.24150.64400.080*
O20.34919 (16)0.21938 (19)0.1892 (3)0.0546 (7)
H20.40180.24260.16970.082*
U11U22U33U12U13U23
C10.041 (2)0.046 (2)0.0280 (19)−0.0019 (17)0.0020 (17)0.0067 (17)
C20.042 (2)0.060 (3)0.047 (2)−0.0057 (19)0.000 (2)0.008 (2)
C30.065 (3)0.065 (3)0.052 (3)−0.006 (2)−0.009 (3)−0.005 (2)
C40.086 (4)0.060 (3)0.050 (3)0.001 (3)0.002 (3)−0.009 (2)
C50.059 (3)0.073 (3)0.055 (3)0.000 (2)0.018 (2)−0.008 (3)
C60.041 (2)0.051 (2)0.036 (2)−0.0025 (18)0.0054 (19)0.0037 (19)
C70.039 (2)0.052 (2)0.037 (2)−0.0042 (19)−0.0017 (19)0.0043 (18)
C80.047 (2)0.063 (3)0.046 (2)−0.0012 (19)−0.002 (2)0.000 (2)
C90.135 (5)0.062 (3)0.078 (4)0.008 (3)−0.040 (4)−0.005 (3)
C100.042 (2)0.044 (2)0.040 (2)−0.0017 (17)−0.007 (2)0.0045 (18)
C110.057 (3)0.057 (3)0.055 (3)0.005 (2)−0.015 (2)−0.003 (2)
C120.076 (3)0.057 (3)0.051 (3)−0.002 (2)−0.009 (3)−0.003 (2)
C130.064 (3)0.056 (3)0.053 (3)0.003 (2)0.006 (3)−0.006 (2)
C140.043 (2)0.054 (3)0.057 (3)0.0029 (19)0.005 (2)0.003 (2)
C150.040 (2)0.048 (2)0.0323 (19)0.0002 (18)−0.0009 (18)0.0053 (18)
C160.0317 (19)0.042 (2)0.040 (2)−0.0067 (16)−0.0017 (18)0.0069 (17)
C170.041 (2)0.055 (2)0.042 (2)−0.0082 (18)−0.0007 (19)−0.0018 (19)
C180.053 (2)0.056 (3)0.065 (3)0.009 (2)−0.005 (2)−0.005 (2)
N10.0335 (16)0.066 (2)0.0355 (16)0.0029 (15)0.0070 (15)−0.0025 (17)
N20.0388 (17)0.063 (2)0.0443 (17)−0.0022 (16)0.0071 (15)0.0033 (17)
N30.0394 (17)0.048 (2)0.0453 (17)0.0020 (16)−0.0106 (16)−0.0019 (16)
N40.0292 (15)0.0576 (19)0.0407 (16)0.0002 (15)−0.0056 (15)0.0033 (17)
O10.0353 (14)0.088 (2)0.0368 (14)0.0083 (14)−0.0012 (13)0.0011 (16)
O20.0335 (14)0.089 (2)0.0413 (14)−0.0056 (14)−0.0032 (13)−0.0031 (15)
C1—N11.368 (4)C10—C151.385 (5)
C1—C21.379 (5)C11—C121.364 (5)
C1—C61.383 (5)C11—H110.9300
C2—C31.354 (5)C12—C131.385 (5)
C2—H2A0.9300C12—H120.9300
C3—C41.381 (6)C13—C141.352 (5)
C3—H30.9300C13—H130.9300
C4—C51.364 (6)C14—C151.374 (5)
C4—H4A0.9300C14—H140.9300
C5—C61.384 (5)C15—N41.366 (4)
C5—H50.9300C16—N31.297 (4)
C6—N21.386 (5)C16—N41.350 (4)
C7—N21.312 (4)C16—C171.492 (5)
C7—N11.347 (4)C17—O21.413 (4)
C7—C81.482 (5)C17—C181.501 (5)
C8—O11.410 (4)C17—H170.9800
C8—C91.494 (6)C18—H18A0.9600
C8—H80.9800C18—H18B0.9600
C9—H9A0.9600C18—H18C0.9600
C9—H9B0.9600N1—H1A0.8600
C9—H9C0.9600N4—H40.8600
C10—C111.379 (5)O1—H10.8200
C10—N31.384 (4)O2—H20.8200
N1—C1—C2132.5 (3)C10—C11—H11121.2
N1—C1—C6105.2 (3)C11—C12—C13121.1 (4)
C2—C1—C6122.3 (3)C11—C12—H12119.5
C3—C2—C1116.9 (4)C13—C12—H12119.5
C3—C2—H2A121.5C14—C13—C12122.0 (4)
C1—C2—H2A121.5C14—C13—H13119.0
C2—C3—C4121.7 (4)C12—C13—H13119.0
C2—C3—H3119.1C13—C14—C15117.1 (4)
C4—C3—H3119.1C13—C14—H14121.5
C5—C4—C3121.6 (4)C15—C14—H14121.5
C5—C4—H4A119.2N4—C15—C14133.3 (4)
C3—C4—H4A119.2N4—C15—C10105.0 (3)
C4—C5—C6117.6 (4)C14—C15—C10121.8 (4)
C4—C5—H5121.2N3—C16—N4112.4 (3)
C6—C5—H5121.2N3—C16—C17126.5 (3)
C1—C6—C5119.8 (4)N4—C16—C17121.1 (3)
C1—C6—N2109.9 (3)O2—C17—C16110.2 (3)
C5—C6—N2130.3 (4)O2—C17—C18111.8 (3)
N2—C7—N1112.6 (3)C16—C17—C18112.6 (3)
N2—C7—C8124.3 (3)O2—C17—H17107.3
N1—C7—C8123.0 (3)C16—C17—H17107.3
O1—C8—C7110.0 (3)C18—C17—H17107.3
O1—C8—C9109.1 (4)C17—C18—H18A109.5
C7—C8—C9112.6 (3)C17—C18—H18B109.5
O1—C8—H8108.4H18A—C18—H18B109.5
C7—C8—H8108.4C17—C18—H18C109.5
C9—C8—H8108.4H18A—C18—H18C109.5
C8—C9—H9A109.5H18B—C18—H18C109.5
C8—C9—H9B109.5C7—N1—C1107.5 (3)
H9A—C9—H9B109.5C7—N1—H1A126.2
C8—C9—H9C109.5C1—N1—H1A126.2
H9A—C9—H9C109.5C7—N2—C6104.7 (3)
H9B—C9—H9C109.5C16—N3—C10105.4 (3)
C11—C10—N3130.1 (3)C16—N4—C15107.7 (3)
C11—C10—C15120.4 (4)C16—N4—H4126.2
N3—C10—C15109.5 (3)C15—N4—H4126.2
C12—C11—C10117.6 (4)C8—O1—H1109.5
C12—C11—H11121.2C17—O2—H2109.5
D—H···AD—HH···AD···AD—H···A
O1—H1···N30.821.912.713 (4)165
N4—H4···O1i0.861.972.828 (4)178
O2—H2···N2ii0.821.932.743 (4)170
N1—H1A···O2iii0.861.932.751 (4)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N30.821.912.713 (4)165
N4—H4⋯O1i0.861.972.828 (4)178
O2—H2⋯N2ii0.821.932.743 (4)170
N1—H1A⋯O2iii0.861.932.751 (4)160

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antiviral activity of some N-benzenesulphonylbenzimidazoles.

Authors:  L Garuti; M Roberti; C Cermelli
Journal:  Bioorg Med Chem Lett       Date:  1999-09-06       Impact factor: 2.823

3.  Synthesis and antitumor activity of benzimidazolyl-1,3,5-triazine and benzimidazolylpyrimidine derivatives.

Authors:  T Matsuno; M Karo; H Sasahara; T Watanabe; M Inaba; M Takahashi; S I Yaguchi; K Yoshioka; M Sakato; S Kawashima
Journal:  Chem Pharm Bull (Tokyo)       Date:  2000-11       Impact factor: 1.645

  3 in total
  3 in total

1.  (S)-2-(1-Hydroxy-ethyl)benzimid-azolium dihydrogen phosphate.

Authors:  Rong Xia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-29

2.  (S)-1-(1-Ferrocenylmethyl-1H-benz-imidazol-2-yl)ethanol monohydrate.

Authors:  Rong Xia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-27

3.  (±)-1-(1-Allyl-1H-benzimidazol-2-yl)ethanol.

Authors:  Dong-Ping Li; Min Li; Shuai Li; Hang-Na Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-03
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.