Literature DB >> 21582749

Diaqua-bis{2-[5-(2-pyrid-yl)-2H-tetra-zol-2-yl]acetato-κN,N}zinc(II).

Bo Wang1.   

Abstract

The title compound, [Zn(C(8)H(6)N(5)O(2))(2)(H(2)O)(2)], was synthesized by hydro-thermal reaction of ZnBr(2) with 2-[5-(2-pyrid-yl)-2H-tetra-zol-2-yl]acetic acid. The Zn(II) atom lies on an inversion center in a distorted octa-hedral environment with two planar trans-related N,N'-chelating 2-[5-(2-pyrid-yl)-2H-tetra-zol-2-yl]acetic acid ligands in the equatorial plane and two water mol-ecules in the axial positions. In the crystal, O-H⋯O hydrogen bonds generate an infinite three-dimensional network.

Entities:  

Year:  2009        PMID: 21582749      PMCID: PMC2969273          DOI: 10.1107/S1600536809023940

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemisty of tetra­zoles, see: Fu et al. (2008 ▶); Dai & Fu (2008 ▶); Wang et al. (2005 ▶); Wen (2008 ▶); Wittenberger & Donner (1993 ▶).

Experimental

Crystal data

[Zn(C8H6N5O2)2(H2O)2] M = 509.76 Monoclinic, a = 7.6407 (15) Å b = 8.2583 (17) Å c = 15.155 (3) Å β = 97.17 (3)° V = 948.8 (3) Å3 Z = 2 Mo Kα radiation μ = 1.36 mm−1 T = 298 K 0.35 × 0.25 × 0.20 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.762, T max = 0.841 (expected range = 0.690–0.762) 9600 measured reflections 2177 independent reflections 1984 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.075 S = 1.11 2177 reflections 151 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.41 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809023940/dn2467sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809023940/dn2467Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C8H6N5O2)2(H2O)2]F(000) = 520
Mr = 509.76Dx = 1.784 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1984 reflections
a = 7.6407 (15) Åθ = 3.6–27.5°
b = 8.2583 (17) ŵ = 1.36 mm1
c = 15.155 (3) ÅT = 298 K
β = 97.17 (3)°Block, colorless
V = 948.8 (3) Å30.35 × 0.25 × 0.20 mm
Z = 2
Rigaku Mercury2 diffractometer2177 independent reflections
Radiation source: fine-focus sealed tube1984 reflections with I > 2σ(I)
graphiteRint = 0.031
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.6°
CCD profile fitting scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −10→10
Tmin = 0.762, Tmax = 0.841l = −19→19
9600 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0393P)2 + 0.3221P] where P = (Fo2 + 2Fc2)/3
2177 reflections(Δ/σ)max < 0.001
151 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.41 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.50000.50000.50000.02160 (10)
N10.32018 (18)0.61053 (17)0.39557 (9)0.0230 (3)
O1W0.72023 (15)0.59206 (14)0.44676 (8)0.0267 (3)
H1WA0.75640.51990.41350.040*
H1WB0.80130.62330.48650.040*
N50.45085 (17)0.73160 (16)0.55431 (9)0.0212 (3)
O1−0.0465 (2)0.79027 (18)0.07872 (9)0.0417 (3)
N20.22867 (19)0.57379 (18)0.31894 (9)0.0253 (3)
O20.16960 (18)0.89846 (16)0.17318 (8)0.0353 (3)
N30.11283 (18)0.68988 (17)0.30393 (9)0.0238 (3)
C50.3275 (2)0.82286 (19)0.50739 (10)0.0211 (3)
C60.2532 (2)0.74873 (19)0.42345 (10)0.0213 (3)
N40.12076 (19)0.80232 (17)0.36653 (9)0.0260 (3)
C10.5300 (2)0.7902 (2)0.63096 (11)0.0275 (4)
H10.61490.72710.66430.033*
C40.2795 (2)0.9734 (2)0.53507 (12)0.0281 (4)
H40.19251.03360.50130.034*
C20.4912 (3)0.9404 (2)0.66288 (12)0.0320 (4)
H20.55010.97870.71620.038*
C30.3640 (3)1.0324 (2)0.61438 (13)0.0330 (4)
H30.33491.13390.63480.040*
C7−0.0122 (2)0.6946 (2)0.22339 (11)0.0303 (4)
H7A−0.12550.73070.23840.036*
H7B−0.02730.58580.19960.036*
C80.0445 (2)0.8059 (2)0.15154 (11)0.0258 (3)
U11U22U33U12U13U23
Zn10.02190 (16)0.02041 (15)0.02109 (15)0.00495 (9)−0.00280 (10)−0.00076 (9)
N10.0233 (7)0.0239 (7)0.0206 (6)0.0030 (5)−0.0022 (5)0.0012 (5)
O1W0.0250 (6)0.0283 (6)0.0263 (6)0.0004 (5)0.0008 (5)−0.0052 (5)
N50.0203 (6)0.0205 (6)0.0221 (7)0.0006 (5)−0.0002 (5)0.0001 (5)
O10.0499 (8)0.0481 (9)0.0238 (6)0.0109 (7)−0.0081 (6)0.0047 (6)
N20.0269 (7)0.0258 (7)0.0213 (7)0.0009 (6)−0.0041 (5)0.0027 (5)
O20.0390 (7)0.0371 (7)0.0304 (7)−0.0054 (6)0.0071 (5)0.0062 (6)
N30.0234 (7)0.0250 (7)0.0211 (7)−0.0008 (5)−0.0043 (5)0.0048 (5)
C50.0198 (7)0.0216 (7)0.0217 (8)−0.0003 (6)0.0018 (6)0.0029 (6)
C60.0211 (7)0.0211 (7)0.0214 (8)0.0005 (6)0.0012 (6)0.0044 (6)
N40.0254 (7)0.0257 (7)0.0253 (7)0.0031 (6)−0.0031 (5)0.0032 (6)
C10.0249 (8)0.0301 (9)0.0258 (8)−0.0007 (7)−0.0034 (7)−0.0010 (7)
C40.0293 (9)0.0231 (8)0.0317 (9)0.0049 (7)0.0035 (7)0.0030 (7)
C20.0362 (10)0.0319 (9)0.0270 (9)−0.0047 (8)0.0002 (7)−0.0069 (7)
C30.0430 (11)0.0229 (8)0.0342 (10)0.0004 (7)0.0089 (8)−0.0060 (7)
C70.0284 (9)0.0334 (9)0.0254 (8)−0.0047 (7)−0.0109 (7)0.0067 (7)
C80.0292 (8)0.0260 (8)0.0217 (8)0.0103 (7)0.0012 (6)0.0034 (6)
Zn1—O1W2.0974 (13)N3—N41.324 (2)
Zn1—O1Wi2.0974 (13)N3—C71.453 (2)
Zn1—N52.1340 (14)C5—C41.377 (2)
Zn1—N5i2.1340 (14)C5—C61.461 (2)
Zn1—N1i2.1640 (14)C6—N41.321 (2)
Zn1—N12.1640 (14)C1—C21.377 (3)
N1—N21.3142 (19)C1—H10.9300
N1—C61.341 (2)C4—C31.380 (3)
O1W—H1WA0.8486C4—H40.9300
O1W—H1WB0.8480C2—C31.373 (3)
N5—C11.332 (2)C2—H20.9300
N5—C51.339 (2)C3—H30.9300
O1—C81.235 (2)C7—C81.529 (2)
N2—N31.305 (2)C7—H7A0.9700
O2—C81.236 (2)C7—H7B0.9700
O1W—Zn1—O1Wi180.0N5—C5—C4122.90 (15)
O1W—Zn1—N590.67 (5)N5—C5—C6113.44 (14)
O1Wi—Zn1—N589.33 (5)C4—C5—C6123.65 (15)
O1W—Zn1—N5i89.33 (5)N4—C6—N1111.77 (14)
O1Wi—Zn1—N5i90.67 (5)N4—C6—C5127.65 (15)
N5—Zn1—N5i180.000 (1)N1—C6—C5120.58 (14)
O1W—Zn1—N1i88.14 (5)C6—N4—N3101.29 (13)
O1Wi—Zn1—N1i91.86 (5)N5—C1—C2122.66 (16)
N5—Zn1—N1i102.84 (5)N5—C1—H1118.7
N5i—Zn1—N1i77.16 (5)C2—C1—H1118.7
O1W—Zn1—N191.86 (5)C5—C4—C3118.07 (17)
O1Wi—Zn1—N188.14 (5)C5—C4—H4121.0
N5—Zn1—N177.16 (5)C3—C4—H4121.0
N5i—Zn1—N1102.84 (5)C3—C2—C1118.66 (17)
N1i—Zn1—N1180.0C3—C2—H2120.7
N2—N1—C6107.04 (13)C1—C2—H2120.7
N2—N1—Zn1140.18 (11)C2—C3—C4119.59 (17)
C6—N1—Zn1111.18 (10)C2—C3—H3120.2
Zn1—O1W—H1WA108.1C4—C3—H3120.2
Zn1—O1W—H1WB112.8N3—C7—C8113.54 (14)
H1WA—O1W—H1WB111.8N3—C7—H7A108.9
C1—N5—C5118.12 (14)C8—C7—H7A108.9
C1—N5—Zn1125.41 (11)N3—C7—H7B108.9
C5—N5—Zn1116.46 (11)C8—C7—H7B108.9
N3—N2—N1105.00 (13)H7A—C7—H7B107.7
N2—N3—N4114.90 (13)O1—C8—O2129.21 (17)
N2—N3—C7121.74 (15)O1—C8—C7113.30 (16)
N4—N3—C7123.35 (14)O2—C8—C7117.48 (15)
D—H···AD—HH···AD···AD—H···A
O1W—H1WB···O1ii0.851.852.6891 (19)172
O1W—H1WA···O2iii0.851.802.6365 (17)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WB⋯O1i0.851.852.6891 (19)172
O1W—H1WA⋯O2ii0.851.802.6365 (17)169

Symmetry codes: (i) ; (ii) .

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