Literature DB >> 21582715

catena-Poly[[diaqua-nickel(II)]-μ-7-oxabicyclo-[2.2.1]heptane-2,3-di-carboxyl-ato].

Yun-Yun Wang1, Rui-Ding Hu, Wen-Zhong Zhu, Qiu-Yue Lin.   

Abstract

In the crystal structure of the title compound, [Ni(C(8)H(8)O(5))(H(2)O)(2)](n), the Ni(II) cation is in a Jahn-Teller-distorted octahedral coordination environment binding to two O atoms from water molecules, the bridging O atom of the bicycloheptane unit, two carboxylate O atoms from different carboxylate groups and one carboxylate O atom from a symmetry-related bridging ligand. The crystal structure is made up from layers propagating parallel to the bc plane.

Entities:  

Year:  2009        PMID: 21582715      PMCID: PMC2969288          DOI: 10.1107/S1600536809021771

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the Cu(II) analogue, see: Wang et al. (2009 ▶).

Experimental

Crystal data

[Ni(C8H8O5)(H2O)2] M = 278.89 Monoclinic, a = 10.9145 (2) Å b = 8.6281 (2) Å c = 10.8581 (2) Å β = 107.351 (1)° V = 975.99 (3) Å3 Z = 4 Mo Kα radiation μ = 2.01 mm−1 T = 296 K 0.27 × 0.20 × 0.10 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.618, T max = 0.817 7972 measured reflections 2213 independent reflections 1961 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.059 S = 1.02 2213 reflections 157 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809021771/at2793sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809021771/at2793Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C8H8O5)(H2O)2]F(000) = 576
Mr = 278.89Dx = 1.898 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4375 reflections
a = 10.9145 (2) Åθ = 2.0–27.5°
b = 8.6281 (2) ŵ = 2.01 mm1
c = 10.8581 (2) ÅT = 296 K
β = 107.351 (1)°Block, green
V = 975.99 (3) Å30.27 × 0.20 × 0.10 mm
Z = 4
Bruker APEXII area-detector diffractometer2213 independent reflections
Radiation source: fine-focus sealed tube1961 reflections with I > 2σ(I)
graphiteRint = 0.019
ω scansθmax = 27.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→14
Tmin = 0.618, Tmax = 0.817k = −11→6
7972 measured reflectionsl = −12→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.022Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.059H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.032P)2 + 0.4246P] where P = (Fo2 + 2Fc2)/3
2213 reflections(Δ/σ)max = 0.001
157 parametersΔρmax = 0.30 e Å3
6 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.73787 (15)−0.1019 (2)0.71021 (15)0.0214 (3)
H1A0.7710−0.20530.70050.026*
C20.75289 (16)0.0067 (2)0.60404 (16)0.0234 (3)
H2A0.68160.00080.52400.028*
C30.88388 (17)−0.0131 (2)0.58426 (19)0.0329 (4)
H3A0.88880.04020.50720.039*
H3B0.9048−0.12160.57890.039*
C40.97214 (18)0.0632 (3)0.7078 (2)0.0375 (5)
H4A1.0324−0.01100.75990.045*
H4B1.01920.14980.68720.045*
C50.87589 (15)0.1175 (2)0.77610 (17)0.0265 (4)
H5A0.90730.20340.83630.032*
C60.82547 (16)−0.0207 (2)0.83620 (16)0.0234 (3)
H6A0.8966−0.08910.88050.028*
C70.59962 (14)−0.1119 (2)0.71114 (15)0.0202 (3)
C80.75095 (16)0.0292 (2)0.92900 (15)0.0242 (4)
O1W0.69190 (12)0.44064 (15)0.74994 (13)0.0289 (3)
H1WA0.711 (2)0.473 (3)0.6846 (18)0.043*
H1WB0.643 (2)0.505 (2)0.765 (2)0.043*
O10.56501 (12)−0.23749 (14)0.74852 (12)0.0244 (3)
O2W0.51314 (14)0.29376 (19)0.53124 (13)0.0383 (3)
H2WA0.557 (2)0.322 (3)0.486 (2)0.057*
H2WB0.4472 (17)0.342 (3)0.512 (2)0.057*
O20.75780 (15)−0.05131 (17)1.02529 (12)0.0389 (3)
O30.52811 (11)0.00446 (14)0.67765 (13)0.0272 (3)
O40.68270 (12)0.15134 (16)0.89954 (11)0.0302 (3)
O50.76514 (11)0.15762 (14)0.66735 (11)0.0236 (3)
Ni10.601796 (19)0.22532 (2)0.714683 (19)0.01937 (8)
U11U22U33U12U13U23
C10.0213 (8)0.0212 (8)0.0245 (8)0.0010 (6)0.0109 (6)−0.0017 (6)
C20.0216 (8)0.0296 (9)0.0221 (8)−0.0007 (7)0.0111 (6)−0.0032 (7)
C30.0287 (9)0.0413 (11)0.0364 (10)0.0019 (8)0.0217 (8)−0.0008 (8)
C40.0218 (9)0.0503 (13)0.0452 (11)−0.0038 (8)0.0172 (8)0.0003 (10)
C50.0196 (8)0.0318 (10)0.0285 (9)−0.0051 (7)0.0080 (7)−0.0037 (7)
C60.0194 (7)0.0285 (9)0.0225 (8)0.0031 (7)0.0066 (6)0.0014 (7)
C70.0218 (8)0.0217 (8)0.0194 (8)−0.0035 (6)0.0098 (6)−0.0058 (6)
C80.0240 (8)0.0299 (9)0.0181 (8)−0.0004 (7)0.0053 (6)−0.0013 (7)
O1W0.0290 (7)0.0249 (7)0.0357 (7)0.0008 (5)0.0145 (6)−0.0014 (5)
O10.0236 (6)0.0228 (6)0.0306 (6)−0.0026 (5)0.0138 (5)0.0003 (5)
O2W0.0377 (8)0.0566 (10)0.0238 (7)0.0112 (7)0.0144 (6)0.0103 (6)
O20.0555 (9)0.0399 (8)0.0258 (7)0.0123 (7)0.0187 (6)0.0097 (6)
O30.0220 (6)0.0209 (6)0.0421 (7)−0.0007 (5)0.0145 (5)−0.0011 (5)
O40.0364 (7)0.0357 (8)0.0218 (6)0.0119 (6)0.0137 (5)0.0046 (5)
O50.0234 (6)0.0249 (6)0.0254 (6)0.0001 (5)0.0118 (5)0.0019 (5)
Ni10.02056 (12)0.02009 (13)0.01992 (12)0.00083 (8)0.00979 (9)0.00170 (8)
C1—C71.514 (2)C6—H6A0.9800
C1—C21.532 (2)C7—O11.254 (2)
C1—C61.580 (2)C7—O31.257 (2)
C1—H1A0.9800C8—O21.239 (2)
C2—O51.460 (2)C8—O41.275 (2)
C2—C31.517 (2)O1W—Ni12.0834 (13)
C2—H2A0.9800O1W—H1WA0.841 (15)
C3—C41.546 (3)O1W—H1WB0.822 (15)
C3—H3A0.9700O1—Ni1i2.0027 (12)
C3—H3B0.9700O2W—Ni12.0255 (13)
C4—C51.529 (2)O2W—H2WA0.824 (16)
C4—H4A0.9700O2W—H2WB0.802 (16)
C4—H4B0.9700O3—Ni12.0608 (12)
C5—O51.457 (2)O4—Ni12.0393 (12)
C5—C61.538 (2)O5—Ni12.0809 (11)
C5—H5A0.9800Ni1—O1ii2.0027 (12)
C6—C81.533 (2)
C7—C1—C2111.72 (13)C1—C6—H6A110.1
C7—C1—C6111.48 (13)O1—C7—O3124.24 (14)
C2—C1—C6101.96 (13)O1—C7—C1116.61 (15)
C7—C1—H1A110.5O3—C7—C1119.13 (15)
C2—C1—H1A110.5O2—C8—O4123.98 (16)
C6—C1—H1A110.5O2—C8—C6119.16 (16)
O5—C2—C3102.07 (14)O4—C8—C6116.85 (14)
O5—C2—C1101.93 (12)Ni1—O1W—H1WA110.9 (17)
C3—C2—C1110.77 (14)Ni1—O1W—H1WB109.8 (17)
O5—C2—H2A113.6H1WA—O1W—H1WB106.5 (19)
C3—C2—H2A113.6C7—O1—Ni1i125.62 (11)
C1—C2—H2A113.6Ni1—O2W—H2WA119.0 (17)
C2—C3—C4101.47 (14)Ni1—O2W—H2WB122.3 (17)
C2—C3—H3A111.5H2WA—O2W—H2WB109 (2)
C4—C3—H3A111.5C7—O3—Ni1120.63 (11)
C2—C3—H3B111.5C8—O4—Ni1123.69 (11)
C4—C3—H3B111.5C5—O5—C296.15 (13)
H3A—C3—H3B109.3C5—O5—Ni1115.54 (9)
C5—C4—C3102.17 (14)C2—O5—Ni1113.69 (9)
C5—C4—H4A111.3O1ii—Ni1—O2W87.33 (6)
C3—C4—H4A111.3O1ii—Ni1—O490.36 (5)
C5—C4—H4B111.3O2W—Ni1—O4177.14 (6)
C3—C4—H4B111.3O1ii—Ni1—O382.07 (5)
H4A—C4—H4B109.2O2W—Ni1—O391.92 (6)
O5—C5—C4101.75 (14)O4—Ni1—O386.09 (5)
O5—C5—C6102.27 (13)O1ii—Ni1—O5172.30 (5)
C4—C5—C6110.67 (16)O2W—Ni1—O591.84 (5)
O5—C5—H5A113.7O4—Ni1—O590.22 (5)
C4—C5—H5A113.7O3—Ni1—O590.31 (5)
C6—C5—H5A113.7O1ii—Ni1—O1W103.17 (5)
C8—C6—C5112.87 (15)O2W—Ni1—O1W88.95 (6)
C8—C6—C1113.00 (13)O4—Ni1—O1W93.22 (5)
C5—C6—C1100.21 (13)O3—Ni1—O1W174.73 (5)
C8—C6—H6A110.1O5—Ni1—O1W84.46 (5)
C5—C6—H6A110.1
C7—C1—C2—O585.11 (15)C6—C8—O4—Ni128.8 (2)
C6—C1—C2—O5−34.06 (14)C4—C5—O5—C256.04 (15)
C7—C1—C2—C3−166.92 (14)C6—C5—O5—C2−58.43 (14)
C6—C1—C2—C373.92 (16)C4—C5—O5—Ni1176.00 (11)
O5—C2—C3—C435.96 (17)C6—C5—O5—Ni161.53 (14)
C1—C2—C3—C4−71.93 (18)C3—C2—O5—C5−57.44 (14)
C2—C3—C4—C5−1.3 (2)C1—C2—O5—C557.12 (13)
C3—C4—C5—O5−33.65 (19)C3—C2—O5—Ni1−178.84 (10)
C3—C4—C5—C674.44 (18)C1—C2—O5—Ni1−64.27 (13)
O5—C5—C6—C8−84.19 (16)C8—O4—Ni1—O1ii133.87 (14)
C4—C5—C6—C8168.06 (15)C8—O4—Ni1—O2W97.8 (11)
O5—C5—C6—C136.27 (15)C8—O4—Ni1—O351.85 (14)
C4—C5—C6—C1−71.48 (16)C8—O4—Ni1—O5−38.45 (14)
C7—C1—C6—C8−0.2 (2)C8—O4—Ni1—O1W−122.91 (14)
C2—C1—C6—C8119.17 (15)C7—O3—Ni1—O1ii−141.13 (13)
C7—C1—C6—C5−120.54 (14)C7—O3—Ni1—O2W131.83 (12)
C2—C1—C6—C5−1.20 (15)C7—O3—Ni1—O4−50.22 (12)
C2—C1—C7—O1149.60 (15)C7—O3—Ni1—O539.98 (12)
C6—C1—C7—O1−97.04 (17)C7—O3—Ni1—O1W32.4 (6)
C2—C1—C7—O3−31.8 (2)C5—O5—Ni1—O1ii−105.7 (4)
C6—C1—C7—O381.59 (18)C2—O5—Ni1—O1ii4.1 (4)
C5—C6—C8—O2−145.66 (17)C5—O5—Ni1—O2W170.59 (12)
C1—C6—C8—O2101.50 (19)C2—O5—Ni1—O2W−79.56 (11)
C5—C6—C8—O435.8 (2)C5—O5—Ni1—O4−11.38 (12)
C1—C6—C8—O4−77.0 (2)C2—O5—Ni1—O498.46 (11)
O3—C7—O1—Ni1i−8.3 (2)C5—O5—Ni1—O3−97.47 (11)
C1—C7—O1—Ni1i170.29 (10)C2—O5—Ni1—O312.37 (10)
O1—C7—O3—Ni1145.58 (13)C5—O5—Ni1—O1W81.83 (12)
C1—C7—O3—Ni1−32.95 (18)C2—O5—Ni1—O1W−168.33 (11)
O2—C8—O4—Ni1−149.69 (15)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O2iii0.84 (2)2.06 (2)2.9027 (19)180 (3)
O1W—H1WB···O3ii0.82 (2)2.13 (2)2.7953 (17)137 (2)
O1W—H1WB···O1iv0.82 (2)2.37 (2)3.1013 (17)149 (2)
O2W—H2WA···O4iii0.82 (2)1.89 (2)2.6967 (19)167 (3)
O2W—H2WB···O2ii0.80 (2)2.34 (2)3.135 (2)170 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯O2i0.841 (15)2.062 (15)2.9027 (19)180 (3)
O1W—H1WB⋯O3ii0.822 (15)2.135 (18)2.7953 (17)137 (2)
O1W—H1WB⋯O1iii0.822 (15)2.366 (19)3.1013 (17)149 (2)
O2W—H2WA⋯O4i0.824 (16)1.888 (16)2.6967 (19)167 (3)
O2W—H2WB⋯O2ii0.802 (16)2.341 (16)3.135 (2)170 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[diaqua-copper(II)]-μ-7-oxa-bicyclo-[2.2.1]heptane-2,3-dicarboxyl-ato].

Authors:  Yun-Yun Wang; Rui-Ding Hu; Yan-Jun Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-10
  2 in total
  1 in total

1.  catena-Poly[[diaqua-cobalt(II)]-μ(2)-7-oxa-bicyclo-[2.2.1]heptane-2,3-dicarboxyl-ato-κO,O,O:O].

Authors:  Fan Zhang; Qiu-Yue Lin; Yong-Chang Wang; Ji-Du He
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-14
  1 in total

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