Literature DB >> 21582705

Poly[[(μ-1H-benzimidazole-5,6-dicarboxyl-ato)zinc(II)] monohydrate].

Zhao-Yang Li1, Jing-Wei Dai, Shan-Tang Yue.   

Abstract

The three-dimensional polymeric title compound, {[Zn(C(9)H(4)N(2)O(4))]·H(2)O}(n), contains one crystallographically independent Zn(II) atom, one fully deprotonated 1H-benzimid-azole-5,6-dicarboxyl-ate (bdc) ligand and one uncoordinated water mol-ecule. The Zn(II) atom is four-coordinated by three O atoms and one N atom from the bdc ligands, giving a distorted tetra-hedral coordination geometry. The uncoordinated water mol-ecule is bound to the main structure through a strong bdc-water N-H⋯O hydrogen bond, and two much weaker water-bdc O-H⋯O inter-actions.

Entities:  

Year:  2009        PMID: 21582705      PMCID: PMC2969483          DOI: 10.1107/S1600536809022107

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures of other bdc complexes, see: Gao et al. (2008 ▶); Lo et al. (2007 ▶); Wei et al. (2008 ▶); Yao et al. (2008 ▶).

Experimental

Crystal data

[Zn(C9H4N2O4)]·H2O M = 287.55 Monoclinic, a = 6.4735 (5) Å b = 8.1836 (6) Å c = 18.4407 (12) Å β = 104.397 (2)° V = 946.25 (12) Å3 Z = 4 Mo Kα radiation μ = 2.61 mm−1 T = 298 K 0.35 × 0.26 × 0.18 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.444, T max = 0.625 4613 measured reflections 1665 independent reflections 1513 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.072 S = 1.06 1665 reflections 154 parameters H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809022107/bg2261sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022107/bg2261Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C9H4N2O4)]·H2OF(000) = 576
Mr = 287.55Dx = 2.018 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2639 reflections
a = 6.4735 (5) Åθ = 2.3–27.6°
b = 8.1836 (6) ŵ = 2.61 mm1
c = 18.4407 (12) ÅT = 298 K
β = 104.397 (2)°Block, colorless
V = 946.25 (12) Å30.35 × 0.26 × 0.18 mm
Z = 4
Bruker APEXII area-detector diffractometer1665 independent reflections
Radiation source: fine-focus sealed tube1513 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −7→7
Tmin = 0.444, Tmax = 0.625k = −9→8
4613 measured reflectionsl = −21→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.072H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0407P)2 + 0.8076P] where P = (Fo2 + 2Fc2)/3
1665 reflections(Δ/σ)max = 0.001
154 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6805 (4)0.7618 (3)1.14674 (15)0.0244 (6)
H10.75620.75651.19670.029*
C20.4362 (4)0.8133 (3)1.04587 (14)0.0210 (6)
C30.5993 (4)0.7274 (3)1.02485 (14)0.0209 (6)
C40.5896 (4)0.6922 (3)0.95017 (14)0.0232 (6)
H40.69860.63580.93640.028*
C50.2433 (4)0.8286 (3)0.91858 (14)0.0210 (6)
C60.2567 (4)0.8630 (3)0.99290 (14)0.0225 (6)
H60.14740.91841.00700.027*
C70.4108 (4)0.7447 (3)0.89738 (14)0.0198 (5)
C80.0478 (4)0.8790 (3)0.85989 (15)0.0244 (6)
C90.4056 (4)0.7163 (3)0.81632 (14)0.0200 (6)
N10.4937 (3)0.8337 (3)1.12397 (12)0.0223 (5)
N20.7500 (3)0.6973 (3)1.09061 (12)0.0255 (5)
H20.86820.64591.09480.031*
O10.0221 (4)0.8307 (4)0.79625 (13)0.0700 (10)
O2−0.0815 (3)0.9719 (3)0.88154 (11)0.0371 (5)
O30.3461 (3)0.5800 (3)0.78853 (10)0.0317 (5)
O40.4720 (4)0.8254 (3)0.78041 (11)0.0360 (5)
Zn1−0.35253 (5)1.02462 (4)0.814219 (16)0.02108 (13)
O1W1.1216 (4)0.5187 (3)1.15400 (15)0.0533 (7)
H1W1.06040.45561.18530.080*
H2W1.19680.60241.18100.080*
U11U22U33U12U13U23
C10.0238 (14)0.0330 (16)0.0141 (13)0.0009 (12)0.0004 (11)0.0029 (11)
C20.0226 (13)0.0263 (14)0.0138 (13)0.0008 (11)0.0037 (11)−0.0001 (10)
C30.0189 (13)0.0270 (15)0.0153 (13)0.0023 (11)0.0013 (11)0.0010 (11)
C40.0215 (13)0.0306 (15)0.0177 (14)0.0056 (11)0.0053 (11)−0.0025 (11)
C50.0212 (13)0.0264 (15)0.0146 (13)0.0006 (11)0.0029 (11)−0.0019 (10)
C60.0206 (13)0.0310 (15)0.0159 (13)0.0052 (11)0.0046 (11)−0.0016 (11)
C70.0222 (13)0.0220 (14)0.0151 (13)−0.0006 (11)0.0043 (10)−0.0015 (10)
C80.0230 (14)0.0329 (16)0.0160 (14)0.0016 (12)0.0025 (11)−0.0013 (11)
C90.0174 (12)0.0266 (15)0.0152 (12)0.0018 (10)0.0025 (10)−0.0009 (11)
N10.0239 (12)0.0313 (13)0.0107 (11)0.0047 (10)0.0026 (9)0.0001 (9)
N20.0208 (12)0.0352 (14)0.0189 (12)0.0083 (10)0.0017 (9)0.0002 (10)
O10.0496 (15)0.125 (3)0.0230 (13)0.0460 (16)−0.0143 (11)−0.0294 (14)
O20.0285 (11)0.0578 (15)0.0209 (11)0.0200 (10)−0.0012 (9)−0.0072 (9)
O30.0511 (13)0.0269 (11)0.0190 (10)−0.0077 (10)0.0125 (9)−0.0057 (8)
O40.0532 (14)0.0376 (13)0.0185 (10)−0.0200 (10)0.0117 (10)−0.0050 (9)
Zn10.0221 (2)0.0270 (2)0.01325 (19)0.00140 (12)0.00268 (13)−0.00017 (12)
O1W0.0410 (14)0.0652 (18)0.0468 (16)0.0148 (12)−0.0022 (12)−0.0085 (12)
C1—N11.316 (3)C6—H60.9300
C1—N21.336 (3)C7—C91.505 (4)
C1—H10.9300C8—O11.210 (3)
C2—C61.380 (4)C8—O21.266 (3)
C2—C31.401 (4)C9—O31.247 (3)
C2—N11.405 (3)C9—O41.250 (3)
C3—N21.376 (3)N2—H20.8600
C3—C41.393 (4)Zn1—O21.929 (2)
C4—C71.383 (4)Zn1—N1i1.999 (2)
C4—H40.9300Zn1—O3ii1.9587 (19)
C5—C61.381 (4)Zn1—O4iii1.996 (2)
C5—C71.418 (4)O1W—H1W0.9333
C5—C81.504 (4)O1W—H2W0.9127
N1—C1—N2112.9 (2)O1—C8—C5119.8 (3)
N1—C1—H1123.6O2—C8—C5116.2 (2)
N2—C1—H1123.6O3—C9—O4122.2 (2)
C6—C2—C3120.8 (2)O3—C9—C7118.3 (2)
C6—C2—N1130.8 (2)O4—C9—C7119.3 (2)
C3—C2—N1108.5 (2)C1—N1—C2105.2 (2)
N2—C3—C4133.0 (2)C1—N1—Zn1i126.26 (18)
N2—C3—C2105.3 (2)C2—N1—Zn1i127.64 (17)
C4—C3—C2121.7 (2)C1—N2—C3108.1 (2)
C7—C4—C3117.1 (2)C1—N2—H2125.9
C7—C4—H4121.4C3—N2—H2125.9
C3—C4—H4121.4C8—O2—Zn1119.85 (18)
C6—C5—C7120.6 (2)C9—O3—Zn1iv121.73 (18)
C6—C5—C8119.5 (2)C9—O4—Zn1v131.46 (18)
C7—C5—C8119.9 (2)O2—Zn1—O3ii116.08 (9)
C2—C6—C5118.5 (2)O2—Zn1—O4iii111.99 (10)
C2—C6—H6120.8O3ii—Zn1—O4iii91.96 (9)
C5—C6—H6120.8O2—Zn1—N1i103.56 (9)
C4—C7—C5121.3 (2)O3ii—Zn1—N1i122.67 (9)
C4—C7—C9117.4 (2)O4iii—Zn1—N1i110.27 (9)
C5—C7—C9121.3 (2)H1W—O1W—H2W109.2
O1—C8—O2124.0 (3)
C6—C2—C3—N2−179.7 (3)C5—C7—C9—O3−99.2 (3)
N1—C2—C3—N20.4 (3)C4—C7—C9—O4−92.4 (3)
C6—C2—C3—C41.5 (4)C5—C7—C9—O484.8 (3)
N1—C2—C3—C4−178.4 (3)N2—C1—N1—C20.3 (3)
N2—C3—C4—C7−178.8 (3)N2—C1—N1—Zn1i−169.63 (19)
C2—C3—C4—C7−0.5 (4)C6—C2—N1—C1179.7 (3)
C3—C2—C6—C5−1.1 (4)C3—C2—N1—C1−0.4 (3)
N1—C2—C6—C5178.8 (3)C6—C2—N1—Zn1i−10.6 (4)
C7—C5—C6—C2−0.2 (4)C3—C2—N1—Zn1i169.32 (18)
C8—C5—C6—C2179.0 (3)N1—C1—N2—C30.0 (3)
C3—C4—C7—C5−0.9 (4)C4—C3—N2—C1178.4 (3)
C3—C4—C7—C9176.3 (2)C2—C3—N2—C1−0.2 (3)
C6—C5—C7—C41.3 (4)O1—C8—O2—Zn17.0 (5)
C8—C5—C7—C4−178.0 (3)C5—C8—O2—Zn1−173.02 (19)
C6—C5—C7—C9−175.8 (3)O4—C9—O3—Zn1iv0.2 (4)
C8—C5—C7—C94.9 (4)C7—C9—O3—Zn1iv−175.59 (17)
C6—C5—C8—O1−170.2 (3)O3—C9—O4—Zn1v−160.8 (2)
C7—C5—C8—O19.1 (5)C7—C9—O4—Zn1v14.9 (4)
C6—C5—C8—O29.8 (4)C8—O2—Zn1—O3ii−44.1 (3)
C7—C5—C8—O2−170.9 (3)C8—O2—Zn1—O4iii59.7 (2)
C4—C7—C9—O383.6 (3)C8—O2—Zn1—N1i178.5 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1W0.862.022.809 (3)152
O1W—H1W···O1vi0.932.453.211 (5)139
O1W—H2W···O4vii0.912.293.095 (3)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1W0.862.022.809 (3)152
O1W—H1W⋯O1i0.932.453.211 (5)139
O1W—H2W⋯O4ii0.912.293.095 (3)146

Symmetry codes: (i) ; (ii) .

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