| Literature DB >> 21582705 |
Zhao-Yang Li1, Jing-Wei Dai, Shan-Tang Yue.
Abstract
The three-dimensional polymeric title compound, {[Zn(C(9)H(4)N(2)O(4))]·H(2)O}(n), contains one crystallographically independent Zn(II) atom, one fully deprotonated 1H-benzimid-azole-5,6-dicarboxyl-ate (bdc) ligand and one uncoordinated water mol-ecule. The Zn(II) atom is four-coordinated by three O atoms and one N atom from the bdc ligands, giving a distorted tetra-hedral coordination geometry. The uncoordinated water mol-ecule is bound to the main structure through a strong bdc-water N-H⋯O hydrogen bond, and two much weaker water-bdc O-H⋯O inter-actions.Entities:
Year: 2009 PMID: 21582705 PMCID: PMC2969483 DOI: 10.1107/S1600536809022107
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(C9H4N2O4)]·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2639 reflections |
| θ = 2.3–27.6° | |
| µ = 2.61 mm−1 | |
| β = 104.397 (2)° | Block, colorless |
| 0.35 × 0.26 × 0.18 mm | |
| Bruker APEXII area-detector diffractometer | 1665 independent reflections |
| Radiation source: fine-focus sealed tube | 1513 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 4613 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1665 reflections | (Δ/σ)max = 0.001 |
| 154 parameters | Δρmax = 0.54 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.6805 (4) | 0.7618 (3) | 1.14674 (15) | 0.0244 (6) | |
| H1 | 0.7562 | 0.7565 | 1.1967 | 0.029* | |
| C2 | 0.4362 (4) | 0.8133 (3) | 1.04587 (14) | 0.0210 (6) | |
| C3 | 0.5993 (4) | 0.7274 (3) | 1.02485 (14) | 0.0209 (6) | |
| C4 | 0.5896 (4) | 0.6922 (3) | 0.95017 (14) | 0.0232 (6) | |
| H4 | 0.6986 | 0.6358 | 0.9364 | 0.028* | |
| C5 | 0.2433 (4) | 0.8286 (3) | 0.91858 (14) | 0.0210 (6) | |
| C6 | 0.2567 (4) | 0.8630 (3) | 0.99290 (14) | 0.0225 (6) | |
| H6 | 0.1474 | 0.9184 | 1.0070 | 0.027* | |
| C7 | 0.4108 (4) | 0.7447 (3) | 0.89738 (14) | 0.0198 (5) | |
| C8 | 0.0478 (4) | 0.8790 (3) | 0.85989 (15) | 0.0244 (6) | |
| C9 | 0.4056 (4) | 0.7163 (3) | 0.81632 (14) | 0.0200 (6) | |
| N1 | 0.4937 (3) | 0.8337 (3) | 1.12397 (12) | 0.0223 (5) | |
| N2 | 0.7500 (3) | 0.6973 (3) | 1.09061 (12) | 0.0255 (5) | |
| H2 | 0.8682 | 0.6459 | 1.0948 | 0.031* | |
| O1 | 0.0221 (4) | 0.8307 (4) | 0.79625 (13) | 0.0700 (10) | |
| O2 | −0.0815 (3) | 0.9719 (3) | 0.88154 (11) | 0.0371 (5) | |
| O3 | 0.3461 (3) | 0.5800 (3) | 0.78853 (10) | 0.0317 (5) | |
| O4 | 0.4720 (4) | 0.8254 (3) | 0.78041 (11) | 0.0360 (5) | |
| Zn1 | −0.35253 (5) | 1.02462 (4) | 0.814219 (16) | 0.02108 (13) | |
| O1W | 1.1216 (4) | 0.5187 (3) | 1.15400 (15) | 0.0533 (7) | |
| H1W | 1.0604 | 0.4556 | 1.1853 | 0.080* | |
| H2W | 1.1968 | 0.6024 | 1.1810 | 0.080* |
| C1 | 0.0238 (14) | 0.0330 (16) | 0.0141 (13) | 0.0009 (12) | 0.0004 (11) | 0.0029 (11) |
| C2 | 0.0226 (13) | 0.0263 (14) | 0.0138 (13) | 0.0008 (11) | 0.0037 (11) | −0.0001 (10) |
| C3 | 0.0189 (13) | 0.0270 (15) | 0.0153 (13) | 0.0023 (11) | 0.0013 (11) | 0.0010 (11) |
| C4 | 0.0215 (13) | 0.0306 (15) | 0.0177 (14) | 0.0056 (11) | 0.0053 (11) | −0.0025 (11) |
| C5 | 0.0212 (13) | 0.0264 (15) | 0.0146 (13) | 0.0006 (11) | 0.0029 (11) | −0.0019 (10) |
| C6 | 0.0206 (13) | 0.0310 (15) | 0.0159 (13) | 0.0052 (11) | 0.0046 (11) | −0.0016 (11) |
| C7 | 0.0222 (13) | 0.0220 (14) | 0.0151 (13) | −0.0006 (11) | 0.0043 (10) | −0.0015 (10) |
| C8 | 0.0230 (14) | 0.0329 (16) | 0.0160 (14) | 0.0016 (12) | 0.0025 (11) | −0.0013 (11) |
| C9 | 0.0174 (12) | 0.0266 (15) | 0.0152 (12) | 0.0018 (10) | 0.0025 (10) | −0.0009 (11) |
| N1 | 0.0239 (12) | 0.0313 (13) | 0.0107 (11) | 0.0047 (10) | 0.0026 (9) | 0.0001 (9) |
| N2 | 0.0208 (12) | 0.0352 (14) | 0.0189 (12) | 0.0083 (10) | 0.0017 (9) | 0.0002 (10) |
| O1 | 0.0496 (15) | 0.125 (3) | 0.0230 (13) | 0.0460 (16) | −0.0143 (11) | −0.0294 (14) |
| O2 | 0.0285 (11) | 0.0578 (15) | 0.0209 (11) | 0.0200 (10) | −0.0012 (9) | −0.0072 (9) |
| O3 | 0.0511 (13) | 0.0269 (11) | 0.0190 (10) | −0.0077 (10) | 0.0125 (9) | −0.0057 (8) |
| O4 | 0.0532 (14) | 0.0376 (13) | 0.0185 (10) | −0.0200 (10) | 0.0117 (10) | −0.0050 (9) |
| Zn1 | 0.0221 (2) | 0.0270 (2) | 0.01325 (19) | 0.00140 (12) | 0.00268 (13) | −0.00017 (12) |
| O1W | 0.0410 (14) | 0.0652 (18) | 0.0468 (16) | 0.0148 (12) | −0.0022 (12) | −0.0085 (12) |
| C1—N1 | 1.316 (3) | C6—H6 | 0.9300 |
| C1—N2 | 1.336 (3) | C7—C9 | 1.505 (4) |
| C1—H1 | 0.9300 | C8—O1 | 1.210 (3) |
| C2—C6 | 1.380 (4) | C8—O2 | 1.266 (3) |
| C2—C3 | 1.401 (4) | C9—O3 | 1.247 (3) |
| C2—N1 | 1.405 (3) | C9—O4 | 1.250 (3) |
| C3—N2 | 1.376 (3) | N2—H2 | 0.8600 |
| C3—C4 | 1.393 (4) | Zn1—O2 | 1.929 (2) |
| C4—C7 | 1.383 (4) | Zn1—N1i | 1.999 (2) |
| C4—H4 | 0.9300 | Zn1—O3ii | 1.9587 (19) |
| C5—C6 | 1.381 (4) | Zn1—O4iii | 1.996 (2) |
| C5—C7 | 1.418 (4) | O1W—H1W | 0.9333 |
| C5—C8 | 1.504 (4) | O1W—H2W | 0.9127 |
| N1—C1—N2 | 112.9 (2) | O1—C8—C5 | 119.8 (3) |
| N1—C1—H1 | 123.6 | O2—C8—C5 | 116.2 (2) |
| N2—C1—H1 | 123.6 | O3—C9—O4 | 122.2 (2) |
| C6—C2—C3 | 120.8 (2) | O3—C9—C7 | 118.3 (2) |
| C6—C2—N1 | 130.8 (2) | O4—C9—C7 | 119.3 (2) |
| C3—C2—N1 | 108.5 (2) | C1—N1—C2 | 105.2 (2) |
| N2—C3—C4 | 133.0 (2) | C1—N1—Zn1i | 126.26 (18) |
| N2—C3—C2 | 105.3 (2) | C2—N1—Zn1i | 127.64 (17) |
| C4—C3—C2 | 121.7 (2) | C1—N2—C3 | 108.1 (2) |
| C7—C4—C3 | 117.1 (2) | C1—N2—H2 | 125.9 |
| C7—C4—H4 | 121.4 | C3—N2—H2 | 125.9 |
| C3—C4—H4 | 121.4 | C8—O2—Zn1 | 119.85 (18) |
| C6—C5—C7 | 120.6 (2) | C9—O3—Zn1iv | 121.73 (18) |
| C6—C5—C8 | 119.5 (2) | C9—O4—Zn1v | 131.46 (18) |
| C7—C5—C8 | 119.9 (2) | O2—Zn1—O3ii | 116.08 (9) |
| C2—C6—C5 | 118.5 (2) | O2—Zn1—O4iii | 111.99 (10) |
| C2—C6—H6 | 120.8 | O3ii—Zn1—O4iii | 91.96 (9) |
| C5—C6—H6 | 120.8 | O2—Zn1—N1i | 103.56 (9) |
| C4—C7—C5 | 121.3 (2) | O3ii—Zn1—N1i | 122.67 (9) |
| C4—C7—C9 | 117.4 (2) | O4iii—Zn1—N1i | 110.27 (9) |
| C5—C7—C9 | 121.3 (2) | H1W—O1W—H2W | 109.2 |
| O1—C8—O2 | 124.0 (3) | ||
| C6—C2—C3—N2 | −179.7 (3) | C5—C7—C9—O3 | −99.2 (3) |
| N1—C2—C3—N2 | 0.4 (3) | C4—C7—C9—O4 | −92.4 (3) |
| C6—C2—C3—C4 | 1.5 (4) | C5—C7—C9—O4 | 84.8 (3) |
| N1—C2—C3—C4 | −178.4 (3) | N2—C1—N1—C2 | 0.3 (3) |
| N2—C3—C4—C7 | −178.8 (3) | N2—C1—N1—Zn1i | −169.63 (19) |
| C2—C3—C4—C7 | −0.5 (4) | C6—C2—N1—C1 | 179.7 (3) |
| C3—C2—C6—C5 | −1.1 (4) | C3—C2—N1—C1 | −0.4 (3) |
| N1—C2—C6—C5 | 178.8 (3) | C6—C2—N1—Zn1i | −10.6 (4) |
| C7—C5—C6—C2 | −0.2 (4) | C3—C2—N1—Zn1i | 169.32 (18) |
| C8—C5—C6—C2 | 179.0 (3) | N1—C1—N2—C3 | 0.0 (3) |
| C3—C4—C7—C5 | −0.9 (4) | C4—C3—N2—C1 | 178.4 (3) |
| C3—C4—C7—C9 | 176.3 (2) | C2—C3—N2—C1 | −0.2 (3) |
| C6—C5—C7—C4 | 1.3 (4) | O1—C8—O2—Zn1 | 7.0 (5) |
| C8—C5—C7—C4 | −178.0 (3) | C5—C8—O2—Zn1 | −173.02 (19) |
| C6—C5—C7—C9 | −175.8 (3) | O4—C9—O3—Zn1iv | 0.2 (4) |
| C8—C5—C7—C9 | 4.9 (4) | C7—C9—O3—Zn1iv | −175.59 (17) |
| C6—C5—C8—O1 | −170.2 (3) | O3—C9—O4—Zn1v | −160.8 (2) |
| C7—C5—C8—O1 | 9.1 (5) | C7—C9—O4—Zn1v | 14.9 (4) |
| C6—C5—C8—O2 | 9.8 (4) | C8—O2—Zn1—O3ii | −44.1 (3) |
| C7—C5—C8—O2 | −170.9 (3) | C8—O2—Zn1—O4iii | 59.7 (2) |
| C4—C7—C9—O3 | 83.6 (3) | C8—O2—Zn1—N1i | 178.5 (2) |
| H··· | ||||
| N2—H2···O1W | 0.86 | 2.02 | 2.809 (3) | 152 |
| O1W—H1W···O1vi | 0.93 | 2.45 | 3.211 (5) | 139 |
| O1W—H2W···O4vii | 0.91 | 2.29 | 3.095 (3) | 146 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯O1 | 0.86 | 2.02 | 2.809 (3) | 152 |
| O1 | 0.93 | 2.45 | 3.211 (5) | 139 |
| O1 | 0.91 | 2.29 | 3.095 (3) | 146 |
Symmetry codes: (i) ; (ii) .